Clone IP12444 Report

Search the DGRC for IP12444

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:124
Well:44
Vector:pOT2
Associated Gene/TranscriptCG5361-RB
Protein status:IP12444.pep: gold
Preliminary Size:1353
Sequenced Size:1503

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5361 2005-01-01 Successful iPCR screen
CG5361 2008-04-29 Release 5.5 accounting
CG5361 2008-04-29 Picked prior to 5.5
CG5361 2008-08-15 Release 5.9 accounting
CG5361 2008-12-18 5.12 accounting

Clone Sequence Records

IP12444.complete Sequence

1503 bp (1503 high quality bases) assembled on 2005-03-28

GenBank Submission: BT022225

> IP12444.complete
CTTTGCAATGGTAACCACACAGCAGACCAAGGAGATTTGCGAAATTATTC
GGCTGAAATCAACCCAGGTGTTCCTGGTGGCTGGAACATGTTTGATAACG
GTAATGGTTACTTTGCTCTGCATTGGCTTTATGACCAGGTACGAGGTGGA
GAACGATGTGGCCAACGTGGCGGATGTGGATTATTGGAAGGATAAGGTGG
CGACCTCCCAGAAAATCTGGTACGATAAGGGCATTGATGAGCTGAACGAG
GCACTAAGGCCACAAGATTTGACTTATCCAAAAAACGTGAGGATATTTGT
GATACAGGGAATCGATGGACGAGACTGGGCTGCTTTTCGATTTCCAACCA
GCGATGCTAGTCGCGGCAATACCAACTTTATTTGGGATCGGTTTCCCCAC
TTGGCTCGCTTGAAAAACAGTTGCAGTCAGCAGTTTCCCTGTCAAGTGGC
CAGTGTTTCCCGAGCTCTTTGGTTGGGAATTCCTTTGGATAAAGTCCCAG
ACAATCAGCAGGATTGCGGAAGGTTATTTAATGCAACGCAAGGCCCGATA
AGCATTCTTCGACAGGCACAATTGGCTGGCCTGCGAACTGGTTTTGTGAC
CACTCAAAGGATTACTGGACCCACAGGAGCTGCTTTGGGAAACGCCAATG
GCAACTTTGAATGCGATGAAAGCATGCCGCTGAACTCCATAAAATCCGGT
TGCCAGGATATAGCCCAACAGTTGATCTCTGATGAAACTGGTAAATTTCT
AAATGTACTCATCGGTGGAGGCAGGCAGATGCTGAGCAGTCTGGTGCCCA
ACACCAAATATGATCCAGTGGATGAGATGCTCTGCGAGTCCAACGATGGA
CGCAACCTGCTAAAGGATTGGAGAAACCAAAAACTTAAGGAGAGCAAAAT
TAATCGAATAATATTCGATTTGATTCAGCGAAGGGATGAGCTGGAGTCCC
TAAATTCTAGTAGTTTTGATTATTTAATGGGTGTGATGGCCAATGGAGAT
TTGAGTGGTAATTCAAAGGCCCCAAGTCTAAAATTGATGGTCGATAAGTC
TTTGAATGTTCTTACTAAATATAAACAAGGATATCTACTCATAGTGGAGC
AATTTATACCATCGGGTATTGACAAAAGAGAGCAGTTGCAGCTTTTGAAT
GATACTTTGGTTAATCTTCACAAAGATCAGGATACTTTAACTCTTGTTTT
AATGACCAATGCCATTTATCCAAAACCAAGCCTGGATGTCAGCGAAGAAA
CCGAGACAATCAGCCTTCTTCCGGAGATATTTAATGAGGCGGAATCTGAG
ATCCAAAAACGACTGCACCAAATGCCATCTGAAAGCTTACTTTTTGCACA
GGGCCCCAAGTCCTCAATTTTTCAAGGTGTTCGAAAAGAAACCTTTCTGG
CACATGCAATATCCCATGTCCTTAGCAGAAGTAGAGTTCGACCTTAGAAT
ACTATTCACATGTATATGTAATAAAAATGTTTAGGTAAAAAAAAAAAAAA
AAA

IP12444.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:39:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG5361.a 1593 CG5361.a 64..1553 1..1490 7450 100 Plus
CG5361-RA 1353 CG5361-RA 1..1346 8..1353 6730 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:04:08
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 5899791..5901143 1353..1 6765 100 Minus
chr3R 27901430 chr3R 5899591..5899725 1486..1352 675 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:15:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:04:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10074021..10075373 1353..1 6765 100 Minus
3R 32079331 3R 10073817..10073955 1490..1352 695 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:29:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 9814852..9816204 1353..1 6765 100 Minus
3R 31820162 3R 9814648..9814786 1490..1352 695 100 Minus
Blast to na_te.dros performed on 2019-03-16 16:04:06 has no hits.

IP12444.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:05:05 Download gff for IP12444.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 5899591..5899724 1353..1486 100 <- Minus
chr3R 5899792..5901143 1..1352 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:52:35 Download gff for IP12444.complete
Subject Subject Range Query Range Percent Splice Strand
CG5361-RA 1..1346 8..1353 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:06:16 Download gff for IP12444.complete
Subject Subject Range Query Range Percent Splice Strand
CG5361-RA 1..1346 8..1353 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:10:00 Download gff for IP12444.complete
Subject Subject Range Query Range Percent Splice Strand
CG5361-RB 1..1440 8..1447 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:51:17 Download gff for IP12444.complete
Subject Subject Range Query Range Percent Splice Strand
CG5361-RA 1..1346 8..1353 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:56:10 Download gff for IP12444.complete
Subject Subject Range Query Range Percent Splice Strand
CG5361-RB 1..1440 8..1447 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:55:05 Download gff for IP12444.complete
Subject Subject Range Query Range Percent Splice Strand
CG5361-RA 1..1346 8..1353 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:06:16 Download gff for IP12444.complete
Subject Subject Range Query Range Percent Splice Strand
CG5361-RA 1..1346 8..1353 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:10:00 Download gff for IP12444.complete
Subject Subject Range Query Range Percent Splice Strand
CG5361-RB 1..1486 1..1486 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:51:17 Download gff for IP12444.complete
Subject Subject Range Query Range Percent Splice Strand
CG5361-RA 1..1346 8..1353 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:56:10 Download gff for IP12444.complete
Subject Subject Range Query Range Percent Splice Strand
CG5361-RB 1..1486 1..1486 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:05:05 Download gff for IP12444.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10073821..10073954 1353..1486 100 <- Minus
3R 10074022..10075373 1..1352 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:05:05 Download gff for IP12444.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10073821..10073954 1353..1486 100 <- Minus
3R 10074022..10075373 1..1352 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:05:05 Download gff for IP12444.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10073821..10073954 1353..1486 100 <- Minus
3R 10074022..10075373 1..1352 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:10:00 Download gff for IP12444.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5899543..5899676 1353..1486 100 <- Minus
arm_3R 5899744..5901095 1..1352 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:26:04 Download gff for IP12444.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9814853..9816204 1..1352 100   Minus
3R 9814652..9814785 1353..1486 100 <- Minus

IP12444.hyp Sequence

Translation from 0 to 1446

> IP12444.hyp
FAMVTTQQTKEICEIIRLKSTQVFLVAGTCLITVMVTLLCIGFMTRYEVE
NDVANVADVDYWKDKVATSQKIWYDKGIDELNEALRPQDLTYPKNVRIFV
IQGIDGRDWAAFRFPTSDASRGNTNFIWDRFPHLARLKNSCSQQFPCQVA
SVSRALWLGIPLDKVPDNQQDCGRLFNATQGPISILRQAQLAGLRTGFVT
TQRITGPTGAALGNANGNFECDESMPLNSIKSGCQDIAQQLISDETGKFL
NVLIGGGRQMLSSLVPNTKYDPVDEMLCESNDGRNLLKDWRNQKLKESKI
NRIIFDLIQRRDELESLNSSSFDYLMGVMANGDLSGNSKAPSLKLMVDKS
LNVLTKYKQGYLLIVEQFIPSGIDKREQLQLLNDTLVNLHKDQDTLTLVL
MTNAIYPKPSLDVSEETETISLLPEIFNEAESEIQKRLHQMPSESLLFAQ
GPKSSIFQGVRKETFLAHAISHVLSRSRVRP*

IP12444.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:47:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG5361-PB 479 CG5361-PB 1..479 3..481 2467 100 Plus
CG16771-PE 596 CG16771-PE 61..582 21..480 515 30.3 Plus
CG16771-PD 596 CG16771-PD 61..582 21..480 515 30.3 Plus
CG16771-PC 596 CG16771-PC 61..582 21..480 515 30.3 Plus
CG16771-PB 596 CG16771-PB 61..582 21..480 515 30.3 Plus

IP12444.pep Sequence

Translation from 1 to 1446

> IP12444.pep
FAMVTTQQTKEICEIIRLKSTQVFLVAGTCLITVMVTLLCIGFMTRYEVE
NDVANVADVDYWKDKVATSQKIWYDKGIDELNEALRPQDLTYPKNVRIFV
IQGIDGRDWAAFRFPTSDASRGNTNFIWDRFPHLARLKNSCSQQFPCQVA
SVSRALWLGIPLDKVPDNQQDCGRLFNATQGPISILRQAQLAGLRTGFVT
TQRITGPTGAALGNANGNFECDESMPLNSIKSGCQDIAQQLISDETGKFL
NVLIGGGRQMLSSLVPNTKYDPVDEMLCESNDGRNLLKDWRNQKLKESKI
NRIIFDLIQRRDELESLNSSSFDYLMGVMANGDLSGNSKAPSLKLMVDKS
LNVLTKYKQGYLLIVEQFIPSGIDKREQLQLLNDTLVNLHKDQDTLTLVL
MTNAIYPKPSLDVSEETETISLLPEIFNEAESEIQKRLHQMPSESLLFAQ
GPKSSIFQGVRKETFLAHAISHVLSRSRVRP*

IP12444.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 15:33:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17135-PA 479 GF17135-PA 1..477 3..478 1762 69.9 Plus
Dana\GF14719-PA 599 GF14719-PA 68..585 23..480 537 30.3 Plus
Dana\GF12326-PA 544 GF12326-PA 67..529 69..473 272 27.5 Plus
Dana\GF22935-PA 592 GF22935-PA 50..540 63..473 237 24.5 Plus
Dana\GF12475-PA 516 GF12475-PA 49..438 61..452 235 25.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 15:33:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17304-PA 449 GG17304-PA 1..448 3..451 2052 84.4 Plus
Dere\GG21178-PA 596 GG21178-PA 61..582 21..480 535 30.4 Plus
Dere\GG11789-PA 596 GG11789-PA 44..369 60..366 246 27.5 Plus
Dere\GG20711-PA 541 GG20711-PA 67..374 69..366 216 30.5 Plus
Dere\GG14123-PA 524 GG14123-PA 51..353 61..366 213 28.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 15:33:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14069-PA 476 GH14069-PA 1..465 3..474 1231 52.1 Plus
Dgri\GH12658-PA 596 GH12658-PA 61..582 21..480 566 30.8 Plus
Dgri\GH13970-PA 593 GH13970-PA 51..541 63..473 277 25.5 Plus
Dgri\GH16243-PA 525 GH16243-PA 47..441 52..452 242 25.6 Plus
Dgri\GH15376-PA 523 GH15376-PA 37..339 69..366 223 28.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:42:02
Subject Length Description Subject Range Query Range Score Percent Strand
Alp13-PB 479 CG5361-PB 1..479 3..481 2467 100 Plus
Alp12-PE 596 CG16771-PE 61..582 21..480 515 30.3 Plus
Alp12-PD 596 CG16771-PD 61..582 21..480 515 30.3 Plus
Alp12-PC 596 CG16771-PC 61..582 21..480 515 30.3 Plus
Alp12-PB 596 CG16771-PB 61..582 21..480 515 30.3 Plus
Alp12-PA 596 CG16771-PA 61..582 21..480 515 30.3 Plus
Alp7-PA 543 CG3292-PA 69..374 71..366 243 30.4 Plus
Alp4-PA 596 CG1462-PA 44..369 60..366 228 27.1 Plus
Alp4-PB 502 CG1462-PB 78..275 177..366 212 32 Plus
Alp6-PA 515 CG1809-PA 6..352 32..366 212 25.3 Plus
Alp8-PB 533 CG3264-PB 65..520 73..472 205 24.4 Plus
Alp8-PA 533 CG3264-PA 65..520 73..472 205 24.4 Plus
Alp2-PA 538 CG3290-PA 64..366 71..366 183 26.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 15:33:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24445-PA 480 GI24445-PA 1..471 3..474 1200 51.1 Plus
Dmoj\GI21523-PA 595 GI21523-PA 60..581 21..480 564 30.4 Plus
Dmoj\GI22314-PA 586 GI22314-PA 47..537 63..473 276 24.5 Plus
Dmoj\GI19888-PA 524 GI19888-PA 50..356 61..366 247 30.3 Plus
Dmoj\GI19038-PA 492 GI19038-PA 20..480 71..477 229 25.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 15:33:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16939-PA 542 GL16939-PA 68..528 71..473 256 26.5 Plus
Dper\GL13536-PA 600 GL13536-PA 63..377 71..366 246 28.2 Plus
Dper\GL12007-PA 538 GL12007-PA 62..454 61..454 225 27.1 Plus
Dper\GL13610-PA 392 GL13610-PA 91..364 94..366 211 28.6 Plus
Dper\GL16938-PA 533 GL16938-PA 32..519 47..473 208 23.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 15:33:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17199-PA 542 GA17199-PA 68..528 71..473 256 26.5 Plus
Dpse\GA13119-PA 600 GA13119-PA 63..377 71..366 246 28.2 Plus
Dpse\GA13119-PB 498 GA13119-PB 29..275 128..366 236 30.4 Plus
Dpse\GA10422-PA 537 GA10422-PA 62..454 61..454 225 27.1 Plus
Dpse\GA24639-PA 521 GA24639-PA 37..340 69..366 215 29.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 15:33:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26188-PA 479 GM26188-PA 1..479 3..481 2362 92.5 Plus
Dsec\GM17344-PA 583 GM17344-PA 61..582 21..480 543 30.4 Plus
Dsec\GM12919-PA 596 GM12919-PA 44..369 60..366 239 27.5 Plus
Dsec\GM13909-PA 524 GM13909-PA 48..353 58..366 223 28.8 Plus
Dsec\GM15655-PA 544 GM15655-PA 69..530 71..473 206 25.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 15:33:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20736-PA 294 GD20736-PA 1..282 3..284 1419 92.6 Plus
Dsim\GD24203-PA 596 GD24203-PA 61..582 21..480 547 30.4 Plus
Dsim\GD21558-PA 596 GD21558-PA 44..369 60..366 239 27.5 Plus
Dsim\GD13186-PA 524 GD13186-PA 48..353 58..366 221 28.8 Plus
Dsim\GD25139-PA 543 GD25139-PA 69..374 71..366 209 29.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 15:33:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10721-PA 798 GJ10721-PA 1..442 3..450 1175 53.1 Plus
Dvir\GJ15998-PA 604 GJ15998-PA 69..590 21..480 578 31.4 Plus
Dvir\GJ10501-PA 623 GJ10501-PA 84..574 63..473 300 25.9 Plus
Dvir\GJ15058-PA 524 GJ15058-PA 75..356 94..366 236 30.3 Plus
Dvir\GJ11955-PA 528 GJ11955-PA 57..445 71..452 231 26.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 15:33:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12203-PA 449 GK12203-PA 11..447 10..474 1113 49.3 Plus
Dwil\GK25119-PA 602 GK25119-PA 67..588 21..480 580 31.5 Plus
Dwil\GK22608-PA 594 GK22608-PA 61..548 66..473 311 26.3 Plus
Dwil\GK16879-PA 530 GK16879-PA 56..360 61..366 275 29.2 Plus
Dwil\GK20837-PA 543 GK20837-PA 69..376 71..366 229 28.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 15:33:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24706-PA 450 GE24706-PA 1..449 3..451 2136 88 Plus
Dyak\GE13250-PA 597 GE13250-PA 62..583 21..480 538 30.6 Plus
Dyak\GE10917-PA 596 GE10917-PA 55..537 71..473 231 24.4 Plus
Dyak\GE11694-PA 543 GE11694-PA 69..529 71..473 228 26.4 Plus
Dyak\GE20547-PA 524 GE20547-PA 4..353 29..366 220 27 Plus