Clone IP12456 Report

Search the DGRC for IP12456

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:124
Well:56
Vector:pOT2
Associated Gene/TranscriptCG6574-RA
Protein status:IP12456.pep: gold
Preliminary Size:1335
Sequenced Size:1993

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6574 2005-01-01 Successful iPCR screen
CG6574 2008-04-29 Release 5.5 accounting
CG6574 2008-08-15 Release 5.9 accounting
CG6574 2008-12-18 5.12 accounting

Clone Sequence Records

IP12456.complete Sequence

1993 bp (1993 high quality bases) assembled on 2006-01-24

GenBank Submission: BT024295

> IP12456.complete
GTGACTGGAGAACTTTTAAACTGGACCACCCACCTGTGCGTTCCACATGC
GATTGTTTGCTTGTGACTTTCAAACCGCATTGTAAATTCGCAATTATCTA
ACAGCGATTTCAGTGTAAATACAATTCGGGCACGTCGAAGTGATAATTTC
GGATTCGCGTCGCGAAGAGATTAGATTTGAGCACCCGGCGACGACGACCA
TGGCCTGATACACCAGATTGCCCGTGAATCTAGGCAATATATTGAGCTTC
ACCTGTCCAGATGCAGAAAGGCCCAGCTAACGGCATCCCACTTCAGTGTT
TCACGTAAGAGCTTGCGCCGCTGAATCTCGTTGCGTAGCGCACGTTACGT
CAGTGACCGTTACGAAATTTCGAAAATGAAGGAGTGGCTGAAGATCTCCT
GCCTCCTCTGTGTCTTTGGCTGCATCCGCGAGATCCGTCCGTCGGAGCCC
TACGTCACGGAGTACCTGCTGGGTCCCTGGCGGAATATCACGGAGCAGCA
GCTAACGCACGATGTTTACCCAGTGGGAACCTATTCCTACCTGGTGCAGT
TGGTCTTTGTATTTCTCATAACAGATTTTCTCAGATACAAGCCGCTGATC
ATCACAATTGGAGCTGCGGGTGTGATAATATGGAGCATGCTCATCTGGAC
CACCAGCTTGCTGTCGCTTCAGATCCTGGAGTTCTTCTTCGGCACTTACA
TGGCCGCAGAGGTGGCCTACTATACGTACATCTATGCCAAAGTGGACAAG
AAATACTATGCCAGAGTGACCTCCCACACCCGAGCAGCCATGTTTGCAGG
CAAACTGGTTTCCGGCATCACTTCCCAACTTATGCTCAATCTGGAGCTGA
TGAACTACAAGGAGCTTAACTATATAACGCTGGGCACTCAGATTATAGCC
ATGCTTTGGGCCTTTGGCCTGCCCCGCGTGGATAGGAGTCTTTACTTTCA
TCGGGAGCAGTTGTCCATTACGGAGCCGCAGACTCAGCTACCCGGGGTGG
GAAACCTGGCTGAGATGGATCAGCAGCAGGAGAATACTCAGAAGCAGCCA
GGAGCACTGAGCCTTCTTTGGCTACATTTTCGGAATGCATACACCAATCC
GCGAGTCGTTCAGTGGAGTCTGTGGTACGCCATTGGACTGGCTGGTTACC
TGCAGGTCACTTACTACGTTCAGGTTCTGTGGAAAGTGATCGAACCGGAG
CCTGTTATTGCGTGGAACGGCGCCGTTGATGCTGTCCTGACAGCTCTGGC
TGCTCTAAGTGCTTTGGCCGCTGGTTATCTGCACACCGGAAGGCTCAGAC
CGCGAGCATCTCTTCTGATCCTGGGCATTCTGTCCGCCGTGGAGGGCGGA
TGTGTGCTGATCTGTTGCTGGACACAGGACATCTACTGGTCGTATGCGGG
CTTTGTGCTCTTCGGCGCCCTCTACGGCTTTACCATCACGGTGGCGAGTG
CTGAAGTGGCCAGAAATCTGGAGGAGGAAAGCTTCGGCCTTGTCTTTGGT
GTGAACACCTTTGTGGCCCTCATTTTCCAGTCACTGTTAACCATAATCTT
TGTCACGGACACTGGTTTTGAGCTCGATCCCGTTGGCCAGTACACGGCGT
ATGCATTCTATTTTATTGGCGTCGGCGTCTTGTATCTGATATCCGTGCTG
ATTGAGTACTTAATGTGCCGCAACAACGACGTCGAAAAGCTGGAAAATTC
ACTGGATTGAGTTCCGAGGCATTTAGATAGTACTTAAGGTGAAAACACAA
CACGTTACTTAAAGAAAGACTGGTTCCTGTGCGTGAACTACCATAATATG
GTATTCGTGCGATGGTCGATTGTATTCCCAGAATATTTAGGTCATCTTTT
TATTACCAATCTGTTGGCGATTCTTAGTATTTAGTAGAAATTTCCATTTA
TAGAGCGCGTGTAATCAGTCTCAAGTGTGCAGGAATAAAGATACCGAGTT
TTAGTATAGAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

IP12456.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:49:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG6574.a 2276 CG6574.a 240..2203 1..1964 9820 100 Plus
CG6574-RA 2343 CG6574-RA 307..2270 1..1964 9820 100 Plus
CG14694-RA 1832 CG14694-RA 519..620 709..810 255 83.3 Plus
CG14694-RA 1832 CG14694-RA 324..413 514..603 150 77.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:29:48
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 6686643..6687204 1448..887 2810 100 Minus
chr3R 27901430 chr3R 6686069..6686584 1962..1447 2565 99.8 Minus
chr3R 27901430 chr3R 6688026..6688526 501..1 2505 100 Minus
chr3R 27901430 chr3R 6687263..6687568 886..581 1530 100 Minus
chr3R 27901430 chr3R 6687882..6687967 584..499 430 100 Minus
chr3R 27901430 chr3R 6684843..6684944 810..709 255 83.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:15:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:29:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10861105..10861666 1448..887 2810 100 Minus
3R 32079331 3R 10860529..10861046 1964..1447 2590 100 Minus
3R 32079331 3R 10862488..10862988 501..1 2505 100 Minus
3R 32079331 3R 10861725..10862030 886..581 1530 100 Minus
3R 32079331 3R 10862344..10862429 584..499 430 100 Minus
3R 32079331 3R 10859305..10859406 810..709 255 83.3 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:09:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 10601936..10602497 1448..887 2810 100 Minus
3R 31820162 3R 10601360..10601877 1964..1447 2590 100 Minus
3R 31820162 3R 10603319..10603819 501..1 2505 100 Minus
3R 31820162 3R 10602556..10602861 886..581 1530 100 Minus
3R 31820162 3R 10603175..10603260 584..499 430 100 Minus
3R 31820162 3R 10600136..10600237 810..709 255 83.3 Minus
Blast to na_te.dros performed on 2019-03-15 15:29:46 has no hits.

IP12456.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:30:42 Download gff for IP12456.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 6686069..6686582 1449..1962 99 <- Minus
chr3R 6686643..6687204 887..1448 100 <- Minus
chr3R 6687263..6687564 585..886 100 <- Minus
chr3R 6687882..6687964 502..584 100 <- Minus
chr3R 6688026..6688526 1..501 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:52:39 Download gff for IP12456.complete
Subject Subject Range Query Range Percent Splice Strand
CG6574-RA 1..1335 376..1710 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:44:48 Download gff for IP12456.complete
Subject Subject Range Query Range Percent Splice Strand
CG6574-RA 1..1335 376..1710 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:30:20 Download gff for IP12456.complete
Subject Subject Range Query Range Percent Splice Strand
CG6574-RA 1..1335 376..1710 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:25:41 Download gff for IP12456.complete
Subject Subject Range Query Range Percent Splice Strand
CG6574-RA 1..1335 376..1710 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:08:02 Download gff for IP12456.complete
Subject Subject Range Query Range Percent Splice Strand
CG6574-RA 1..1335 376..1710 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:53:03 Download gff for IP12456.complete
Subject Subject Range Query Range Percent Splice Strand
CG6574-RA 1..1962 1..1962 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:44:48 Download gff for IP12456.complete
Subject Subject Range Query Range Percent Splice Strand
CG6574-RA 1..1962 1..1962 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:30:20 Download gff for IP12456.complete
Subject Subject Range Query Range Percent Splice Strand
CG6574-RA 1..1962 1..1962 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:25:41 Download gff for IP12456.complete
Subject Subject Range Query Range Percent Splice Strand
CG6574-RA 1..1962 1..1962 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:08:02 Download gff for IP12456.complete
Subject Subject Range Query Range Percent Splice Strand
CG6574-RA 1..1962 1..1962 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:30:42 Download gff for IP12456.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10860531..10861044 1449..1962 100 <- Minus
3R 10861105..10861666 887..1448 100 <- Minus
3R 10861725..10862026 585..886 100 <- Minus
3R 10862344..10862426 502..584 100 <- Minus
3R 10862488..10862988 1..501 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:30:42 Download gff for IP12456.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10860531..10861044 1449..1962 100 <- Minus
3R 10861105..10861666 887..1448 100 <- Minus
3R 10861725..10862026 585..886 100 <- Minus
3R 10862344..10862426 502..584 100 <- Minus
3R 10862488..10862988 1..501 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:30:42 Download gff for IP12456.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10860531..10861044 1449..1962 100 <- Minus
3R 10861105..10861666 887..1448 100 <- Minus
3R 10861725..10862026 585..886 100 <- Minus
3R 10862344..10862426 502..584 100 <- Minus
3R 10862488..10862988 1..501 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:30:20 Download gff for IP12456.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6686253..6686766 1449..1962 100 <- Minus
arm_3R 6686827..6687388 887..1448 100 <- Minus
arm_3R 6687447..6687748 585..886 100 <- Minus
arm_3R 6688066..6688148 502..584 100 <- Minus
arm_3R 6688210..6688710 1..501 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:58:38 Download gff for IP12456.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10601362..10601875 1449..1962 100 <- Minus
3R 10601936..10602497 887..1448 100 <- Minus
3R 10602556..10602857 585..886 100 <- Minus
3R 10603175..10603257 502..584 100 <- Minus
3R 10603319..10603819 1..501 100   Minus

IP12456.pep Sequence

Translation from 375 to 1709

> IP12456.pep
MKEWLKISCLLCVFGCIREIRPSEPYVTEYLLGPWRNITEQQLTHDVYPV
GTYSYLVQLVFVFLITDFLRYKPLIITIGAAGVIIWSMLIWTTSLLSLQI
LEFFFGTYMAAEVAYYTYIYAKVDKKYYARVTSHTRAAMFAGKLVSGITS
QLMLNLELMNYKELNYITLGTQIIAMLWAFGLPRVDRSLYFHREQLSITE
PQTQLPGVGNLAEMDQQQENTQKQPGALSLLWLHFRNAYTNPRVVQWSLW
YAIGLAGYLQVTYYVQVLWKVIEPEPVIAWNGAVDAVLTALAALSALAAG
YLHTGRLRPRASLLILGILSAVEGGCVLICCWTQDIYWSYAGFVLFGALY
GFTITVASAEVARNLEEESFGLVFGVNTFVALIFQSLLTIIFVTDTGFEL
DPVGQYTAYAFYFIGVGVLYLISVLIEYLMCRNNDVEKLENSLD*

IP12456.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:34:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16177-PA 443 GF16177-PA 1..443 1..444 1937 85.6 Plus
Dana\GF16179-PA 443 GF16179-PA 1..434 1..427 1205 53.7 Plus
Dana\GF16180-PA 409 GF16180-PA 1..401 1..397 1184 56.4 Plus
Dana\GF15658-PA 427 GF15658-PA 1..425 1..438 972 45.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:34:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17259-PA 444 GG17259-PA 1..444 1..444 2059 91.9 Plus
Dere\GG17260-PA 445 GG17260-PA 1..444 1..442 1281 56.5 Plus
Dere\GG10243-PA 432 GG10243-PA 1..427 1..441 990 46 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:34:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18741-PA 450 GH18741-PA 1..446 1..441 1730 77.1 Plus
Dgri\GH18742-PA 447 GH18742-PA 4..447 3..440 1296 56.5 Plus
Dgri\GH10121-PA 429 GH10121-PA 1..429 1..438 911 44.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:43:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG6574-PA 444 CG6574-PA 1..444 1..444 2311 100 Plus
CG14694-PA 446 CG14694-PA 1..432 1..429 1354 58.3 Plus
CG17036-PB 432 CG17036-PB 1..421 1..434 995 45.2 Plus
CG17036-PA 432 CG17036-PA 1..421 1..434 995 45.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:34:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24657-PA 437 GI24657-PA 1..437 1..444 1753 79.3 Plus
Dmoj\GI24658-PA 442 GI24658-PA 3..441 2..434 1209 54.9 Plus
Dmoj\GI14499-PA 433 GI14499-PA 1..413 1..420 938 46.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:34:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12063-PA 453 GL12063-PA 1..453 1..444 1888 81.7 Plus
Dper\GL12064-PA 450 GL12064-PA 1..433 1..427 1166 51.8 Plus
Dper\GL19736-PA 426 GL19736-PA 1..426 1..437 929 45.4 Plus
Dper\GL19735-PA 432 GL19735-PA 1..429 1..440 924 44.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:34:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19694-PA 453 GA19694-PA 1..453 1..444 1890 81.9 Plus
Dpse\GA13183-PA 450 GA13183-PA 1..433 1..427 1171 52.1 Plus
Dpse\GA28920-PA 426 GA28920-PA 1..426 1..437 933 45.7 Plus
Dpse\GA14288-PA 432 GA14288-PA 1..429 1..440 928 45.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:34:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26143-PA 444 GM26143-PA 1..444 1..444 2187 95.9 Plus
Dsec\GM26144-PA 446 GM26144-PA 1..445 1..442 1335 56.4 Plus
Dsec\GM26031-PA 432 GM26031-PA 1..422 1..435 979 45.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:34:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20696-PA 444 GD20696-PA 1..444 1..444 2284 97.1 Plus
Dsim\GD20697-PA 446 GD20697-PA 1..432 1..429 1291 57.8 Plus
Dsim\GD22102-PA 432 GD22102-PA 1..422 1..435 976 45.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:34:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24031-PA 457 GJ24031-PA 1..445 1..433 1753 80.2 Plus
Dvir\GJ24032-PA 441 GJ24032-PA 4..441 3..433 1298 58.4 Plus
Dvir\GJ16277-PA 398 GJ16277-PA 1..396 1..405 900 46.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:34:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13288-PA 431 GK13288-PA 1..427 1..438 1757 80.6 Plus
Dwil\GK13289-PA 449 GK13289-PA 4..444 3..417 1261 58 Plus
Dwil\GK14666-PA 438 GK14666-PA 1..438 1..441 977 46 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:34:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24660-PA 444 GE24660-PA 1..444 1..444 2071 93 Plus
Dyak\GE24661-PA 446 GE24661-PA 1..445 1..442 1275 55.5 Plus
Dyak\GE12099-PA 432 GE12099-PA 1..422 1..435 962 45.5 Plus

IP12456.hyp Sequence

Translation from 375 to 1709

> IP12456.hyp
MKEWLKISCLLCVFGCIREIRPSEPYVTEYLLGPWRNITEQQLTHDVYPV
GTYSYLVQLVFVFLITDFLRYKPLIITIGAAGVIIWSMLIWTTSLLSLQI
LEFFFGTYMAAEVAYYTYIYAKVDKKYYARVTSHTRAAMFAGKLVSGITS
QLMLNLELMNYKELNYITLGTQIIAMLWAFGLPRVDRSLYFHREQLSITE
PQTQLPGVGNLAEMDQQQENTQKQPGALSLLWLHFRNAYTNPRVVQWSLW
YAIGLAGYLQVTYYVQVLWKVIEPEPVIAWNGAVDAVLTALAALSALAAG
YLHTGRLRPRASLLILGILSAVEGGCVLICCWTQDIYWSYAGFVLFGALY
GFTITVASAEVARNLEEESFGLVFGVNTFVALIFQSLLTIIFVTDTGFEL
DPVGQYTAYAFYFIGVGVLYLISVLIEYLMCRNNDVEKLENSLD*

IP12456.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:47:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG6574-PA 444 CG6574-PA 1..444 1..444 2311 100 Plus
CG14694-PA 446 CG14694-PA 1..432 1..429 1354 58.3 Plus
CG17036-PB 432 CG17036-PB 1..421 1..434 995 45.2 Plus
CG17036-PA 432 CG17036-PA 1..421 1..434 995 45.2 Plus