Clone IP12506 Report

Search the DGRC for IP12506

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:125
Well:6
Vector:pOT2
Associated Gene/TranscriptCG31821-RA
Protein status:IP12506.pep: validated not full length
Preliminary Size:1284
Sequenced Size:1354

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31821 2005-01-01 Successful iPCR screen
CG31821 2008-04-29 Release 5.5 accounting
CG31821 2008-08-15 Release 5.9 accounting
CG31821 2008-12-18 5.12 accounting
CG31821 2011-03-01 Transcript Validation

Clone Sequence Records

IP12506.complete Sequence

1354 bp (1354 high quality bases) assembled on 2005-04-11

GenBank Submission: BT022892

> IP12506.complete
TGCGGTGCCTTGTCGATTGTGTGTCTGATATTCCTTTTCGGAATATCCGA
GGCCCGCAAAGGATTTGGTCCTGGCGAACAGGACTGGGGTTATGTGGACG
TCCGCGATGGGGCTCACATGTTCTACTGGCTATATTACACCACTGCGAAT
GTGAGCAGTTATACTGATCGACCGCTGGTTCTGTGGCTCCAGGGCGGACC
TGGTGGCTCCTCCACAGCCCTGGGAAATTTCCAGGAGCTGGGACCTGTGG
ACACGAATGGTCAGCCGCGAGACGGAAACTGGGTACAGTACGTCAACGTG
CTGTTCATTGACAATCCCGTGGGATCGGGGTTTAGCTATGCGGATAACAC
CAGTCTGCTGGTTACCAACAATGAGGAGCTCATCGACGATCTGATTAGCT
TCATGCTGCACTTCTATAAATTGCACAAAGAGTTCAAGAACGTCCCACTC
CACATATTCTCGGAGAGTTATGGTGGTAAAATGGCCCCCGCCCTGGCCAT
TCGACTGGCTAAAGCCATGAGCGCCGGTGAGTTGGCGCATCCGGGAACTC
TTAAGTCAGTGACTATCGGCAATCCTTGGATATCAACTCGGCACATCAGC
CGCGAGCACTCCAAGTATTTGTTCGTCAATGGTTTGATCGACGAGGATGG
GGTAGCCCTACTCGATGCCCAGGAGGAACGAATCTTAAGTGCTCTCAAGA
AACACGAGTTTGATAAGGCCACTGATGAGTACTTGAGGTGGTATGAACTC
ATGCAGCAACTGACTGGTGAGATCTACCTTTACAATACACAGACCCACGT
GGATCCTTCAGAGGATAGAACCTACGGCTATGGAGAAGAATTTATCCGCT
TCATAGAGCGAAATGTCAGTGAGGCCCTGCAGATCAATGGTACTGTCTAT
GCGTCACAGGTTATGGAAGTGTTGTCCAGCCTTCACGGAGATCGCCTGAA
ATCGGAAATTAATACAATCCCGCGCCTGCTGAATGAGACCTCTGTTAAGG
TAAATATTTATTCTGGCCAGTTGGACACTTTAGTGCCGACCACAGCCACA
TTGGCTCTGATCAAGGACTGGGCATGGAATGACAAATCGGAATATCTGGA
GGCCAATCGCACAACCATAGTTATCAAAGGCATACTTCAGGGTTACAAAA
AGGTCGGAGGCAACTTCGGGATGTACTGGATAAATCGGTCGGGCCACATG
GCCCCGTCAGATAATCCAGTCGCCATGCAGTATGTCCTTCAATCCGTTAC
GCAATATGACAGCTATAATATTGAATAACTTAATATGTAACATAAGACAC
ATCGAATAAAGCATTTCTACCATATAGACGTCGTAAAAAAAAAAAAAAAA
AAAA

IP12506.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:37:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG31821-RA 1422 CG31821-RA 37..1371 1..1335 6675 100 Plus
CG3344-RA 1689 CG3344-RA 298..455 55..212 235 76.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:47:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 15900194..15901160 967..1 4775 99.6 Minus
chr2L 23010047 chr2L 15899774..15900140 1334..968 1820 99.7 Minus
chr3L 24539361 chr3L 687013..687170 212..55 235 76.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:15:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15901405..15902371 967..1 4835 100 Minus
2L 23513712 2L 15900984..15901351 1335..968 1840 100 Minus
3L 28110227 3L 687213..687370 212..55 235 76.6 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:28:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15901405..15902371 967..1 4835 100 Minus
2L 23513712 2L 15900984..15901351 1335..968 1840 100 Minus
3L 28103327 3L 687213..687370 212..55 235 76.5 Minus
Blast to na_te.dros performed on 2019-03-16 12:47:15 has no hits.

IP12506.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:47:58 Download gff for IP12506.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 15899774..15900140 968..1334 99 <- Minus
chr2L 15900194..15901160 1..967 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:52:52 Download gff for IP12506.complete
Subject Subject Range Query Range Percent Splice Strand
CG31821-RA 7..1284 1..1278 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:03:28 Download gff for IP12506.complete
Subject Subject Range Query Range Percent Splice Strand
CG31821-RA 7..1284 1..1278 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 15:26:32 Download gff for IP12506.complete
Subject Subject Range Query Range Percent Splice Strand
CG31821-RA 7..1284 1..1278 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:48:26 Download gff for IP12506.complete
Subject Subject Range Query Range Percent Splice Strand
CG31821-RA 7..1284 1..1278 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:55:34 Download gff for IP12506.complete
Subject Subject Range Query Range Percent Splice Strand
CG31821-RA 7..1284 1..1278 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:49:20 Download gff for IP12506.complete
Subject Subject Range Query Range Percent Splice Strand
CG31821-RA 7..1284 1..1278 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:03:28 Download gff for IP12506.complete
Subject Subject Range Query Range Percent Splice Strand
CG31821-RA 7..1340 1..1334 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:26:32 Download gff for IP12506.complete
Subject Subject Range Query Range Percent Splice Strand
CG31821-RA 23..1356 1..1334 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:48:27 Download gff for IP12506.complete
Subject Subject Range Query Range Percent Splice Strand
CG31821-RA 7..1284 1..1278 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:55:34 Download gff for IP12506.complete
Subject Subject Range Query Range Percent Splice Strand
CG31821-RA 40..1373 1..1334 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:47:58 Download gff for IP12506.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15900985..15901351 968..1334 100 <- Minus
2L 15901405..15902371 1..967 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:47:58 Download gff for IP12506.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15900985..15901351 968..1334 100 <- Minus
2L 15901405..15902371 1..967 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:47:58 Download gff for IP12506.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15900985..15901351 968..1334 100 <- Minus
2L 15901405..15902371 1..967 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:26:32 Download gff for IP12506.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15900985..15901351 968..1334 100 <- Minus
arm_2L 15901405..15902371 1..967 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:23:13 Download gff for IP12506.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15900985..15901351 968..1334 100 <- Minus
2L 15901405..15902371 1..967 100   Minus

IP12506.pep Sequence

Translation from 0 to 1277

> IP12506.pep
CGALSIVCLIFLFGISEARKGFGPGEQDWGYVDVRDGAHMFYWLYYTTAN
VSSYTDRPLVLWLQGGPGGSSTALGNFQELGPVDTNGQPRDGNWVQYVNV
LFIDNPVGSGFSYADNTSLLVTNNEELIDDLISFMLHFYKLHKEFKNVPL
HIFSESYGGKMAPALAIRLAKAMSAGELAHPGTLKSVTIGNPWISTRHIS
REHSKYLFVNGLIDEDGVALLDAQEERILSALKKHEFDKATDEYLRWYEL
MQQLTGEIYLYNTQTHVDPSEDRTYGYGEEFIRFIERNVSEALQINGTVY
ASQVMEVLSSLHGDRLKSEINTIPRLLNETSVKVNIYSGQLDTLVPTTAT
LALIKDWAWNDKSEYLEANRTTIVIKGILQGYKKVGGNFGMYWINRSGHM
APSDNPVAMQYVLQSVTQYDSYNIE*

IP12506.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 15:21:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14967-PA 430 GF14967-PA 4..425 1..420 1798 76.2 Plus
Dana\GF24074-PA 439 GF24074-PA 4..438 4..419 923 46.7 Plus
Dana\GF24075-PA 446 GF24075-PA 5..445 5..419 889 41.9 Plus
Dana\GF14968-PA 428 GF14968-PA 13..427 7..419 882 41.5 Plus
Dana\GF17355-PA 478 GF17355-PA 89..476 32..419 373 30.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 15:21:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24185-PA 425 GG24185-PA 3..421 1..421 2042 89.1 Plus
Dere\GG14645-PA 439 GG14645-PA 18..438 18..419 901 46.8 Plus
Dere\GG14646-PA 446 GG14646-PA 22..445 17..419 891 42.3 Plus
Dere\GG24186-PA 427 GG24186-PA 15..426 7..419 874 40.8 Plus
Dere\GG11055-PA 206 GG11055-PA 3..113 1..127 537 80.3 Plus
Dere\GG11055-PA 206 GG11055-PA 110..206 262..358 422 81.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 15:21:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11350-PA 665 GH11350-PA 259..664 12..419 935 45.3 Plus
Dgri\GH16040-PA 446 GH16040-PA 6..445 4..419 913 42.3 Plus
Dgri\GH16039-PA 442 GH16039-PA 7..441 3..419 882 43.5 Plus
Dgri\GH21639-PA 479 GH21639-PA 87..477 30..419 373 32 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:35:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG31821-PB 427 CG31821-PB 3..427 1..425 2243 100 Plus
CG31821-PA 427 CG31821-PA 3..427 1..425 2243 100 Plus
CG32483-PA 439 CG32483-PA 2..438 3..419 911 44.1 Plus
hiro-PA 446 CG3344-PA 5..445 5..419 909 42.8 Plus
CG31823-PA 427 CG31823-PA 16..426 1..419 868 41.2 Plus
CG4572-PD 482 CG4572-PD 89..480 30..419 393 30.7 Plus
CG4572-PB 482 CG4572-PB 89..480 30..419 393 30.7 Plus
CG4572-PA 482 CG4572-PA 89..480 30..419 393 30.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 15:21:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12304-PA 450 GI12304-PA 7..442 3..419 964 42.9 Plus
Dmoj\GI12303-PA 442 GI12303-PA 6..441 4..419 931 42.3 Plus
Dmoj\GI17365-PA 422 GI17365-PA 22..421 17..419 921 44.1 Plus
Dmoj\GI12302-PA 442 GI12302-PA 8..441 4..419 903 45.6 Plus
Dmoj\GI19272-PA 470 GI19272-PA 79..467 30..418 372 29.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 15:21:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15325-PA 426 GL15325-PA 4..422 2..420 1785 74.7 Plus
Dper\GL20838-PA 445 GL20838-PA 8..444 3..419 928 42 Plus
Dper\GL20837-PA 439 GL20837-PA 3..438 3..419 901 44.2 Plus
Dper\GL15326-PA 426 GL15326-PA 24..425 17..419 860 41.3 Plus
Dper\GL15319-PA 415 GL15319-PA 4..414 5..419 775 37.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 15:21:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16504-PA 426 GA16504-PA 4..422 2..420 1780 74.5 Plus
Dpse\GA17392-PA 445 GA17392-PA 8..444 3..419 933 42.2 Plus
Dpse\GA16937-PA 439 GA16937-PA 3..438 3..419 902 44.2 Plus
Dpse\GA16505-PA 426 GA16505-PA 24..425 17..419 860 41.3 Plus
Dpse\GA28793-PA 399 GA28793-PA 4..398 5..419 673 35.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 15:21:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17923-PA 425 GM17923-PA 3..425 1..425 2154 94.1 Plus
Dsec\GM14261-PA 446 GM14261-PA 22..445 17..419 903 43.6 Plus
Dsec\GM17924-PA 427 GM17924-PA 16..426 1..419 887 41.9 Plus
Dsec\GM14260-PA 262 GM14260-PA 18..162 18..162 561 70.3 Plus
Dsec\GM26891-PA 482 GM26891-PA 89..480 30..419 383 31 Plus
Dsec\GM14260-PA 262 GM14260-PA 150..261 305..419 266 42.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 15:21:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13518-PA 446 GD13518-PA 22..445 17..419 900 43.3 Plus
Dsim\GD13517-PA 439 GD13517-PA 18..438 18..419 899 46.8 Plus
Dsim\GD11968-PA 285 GD11968-PA 1..284 135..419 462 36.4 Plus
Dsim\GD20098-PA 482 GD20098-PA 89..480 30..419 379 30.7 Plus
Dsim\GD21932-PA 123 GD21932-PA 26..122 323..419 239 45.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 15:21:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13240-PA 444 GJ13240-PA 6..443 4..419 945 43.6 Plus
Dvir\GJ18041-PA 478 GJ18041-PA 71..477 11..419 931 43.8 Plus
Dvir\GJ13239-PA 442 GJ13239-PA 9..441 3..419 890 44.4 Plus
Dvir\GJ19859-PA 479 GJ19859-PA 85..477 30..419 385 30.7 Plus
Dvir\GJ22150-PA 481 GJ22150-PA 87..479 30..419 329 29.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 15:21:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24262-PA 428 GK24262-PA 6..421 8..420 1595 68 Plus
Dwil\GK24263-PA 426 GK24263-PA 8..425 4..419 967 45.8 Plus
Dwil\GK16682-PA 442 GK16682-PA 10..441 7..419 936 45.1 Plus
Dwil\GK16683-PA 445 GK16683-PA 3..444 1..419 906 42.3 Plus
Dwil\GK22811-PA 481 GK22811-PA 92..479 32..419 378 30.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 15:21:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19378-PA 425 GE19378-PA 3..421 1..421 2038 90 Plus
Dyak\GE21005-PA 439 GE21005-PA 2..438 3..419 923 46.7 Plus
Dyak\GE21006-PA 446 GE21006-PA 22..445 17..419 892 42.3 Plus
Dyak\GE19379-PA 427 GE19379-PA 16..426 1..419 839 40.3 Plus
Dyak\GE25110-PA 482 GE25110-PA 89..480 30..419 374 30.7 Plus

IP12506.hyp Sequence

Translation from 0 to 1277

> IP12506.hyp
CGALSIVCLIFLFGISEARKGFGPGEQDWGYVDVRDGAHMFYWLYYTTAN
VSSYTDRPLVLWLQGGPGGSSTALGNFQELGPVDTNGQPRDGNWVQYVNV
LFIDNPVGSGFSYADNTSLLVTNNEELIDDLISFMLHFYKLHKEFKNVPL
HIFSESYGGKMAPALAIRLAKAMSAGELAHPGTLKSVTIGNPWISTRHIS
REHSKYLFVNGLIDEDGVALLDAQEERILSALKKHEFDKATDEYLRWYEL
MQQLTGEIYLYNTQTHVDPSEDRTYGYGEEFIRFIERNVSEALQINGTVY
ASQVMEVLSSLHGDRLKSEINTIPRLLNETSVKVNIYSGQLDTLVPTTAT
LALIKDWAWNDKSEYLEANRTTIVIKGILQGYKKVGGNFGMYWINRSGHM
APSDNPVAMQYVLQSVTQYDSYNIE*

IP12506.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:48:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG31821-PB 427 CG31821-PB 3..427 1..425 2243 100 Plus
CG31821-PA 427 CG31821-PA 3..427 1..425 2243 100 Plus
CG32483-PA 439 CG32483-PA 2..438 3..419 911 44.1 Plus
CG3344-PA 446 CG3344-PA 5..445 5..419 909 42.8 Plus
CG31823-PA 427 CG31823-PA 16..426 1..419 868 41.2 Plus