Clone IP12580 Report

Search the DGRC for IP12580

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:125
Well:80
Vector:pOT2
Associated Gene/TranscriptCG9259-RA
Protein status:IP12580.pep: gold
Preliminary Size:1269
Sequenced Size:1413

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9259 2005-01-01 Successful iPCR screen
CG9259 2008-04-29 Stopped prior to 5.5

Clone Sequence Records

IP12580.complete Sequence

1413 bp assembled on 2011-09-01

GenBank Submission: BT128869.1

> IP12580.complete
AGATGGCGACTGCTTTGGAACTGAGTCCAACCGAGATTCGCGGCCTGTGC
CAGCGGTACTTTCATCAAGATGTTTCCAATTCGGATACGGGGTTCGATAT
AGTCAACTATACTCTTAAGCCCACCTCGGATGCTCCAGCCGGATACTTGG
GCAGCCACCTCTACCTGCACGTCACTCTGAAGCTTCACAATTCCGAGGAG
GTCCGGCAGCTCACATTCTTCTCGAAGTCGGCGCCCGTGGGTAATGAGTC
GCGAATGGAATACCTAGAGGATTTTGGAGTGTTCGAAAAGGAAATCGCTG
TCTACCAGAACGTTCTACCCGATCTTCACAAGGCCTGTGCAGAAGTGGCG
CCCAAGTGCTATTACGCGGACAAGAATCTACTGATCTTTGAGAACCTCGC
AGATCAGGGCTATCGAATGGGTGCTGGACGGGATGGTCTGCTGACCTATG
AGCAGCTCCATTGCTGTCTAAAAACCTTGGCCGCCATGCATGCTGGTTCC
ATAATCCAGGAACAGAGAACGGGACAAAAAATAGCACAGTCTCAGCCTAA
ATCAGTGGTGGAGAATGCCTATCCCAGTGATGTGTCGCCGGAACATATGA
GGATGGTGAATTTTCAAAATGCCTGTCTGGTGCTCAAGGAGTTCATCAAA
CTAATACCCAAATATCAGTCCAAGTTGGATTACGTATTGGAAAACTTTAC
AGAAAAGATGTCCTTTATTTTTGAGGCCGTCAAGACCTCGGATGTGTACC
AGAATACCATACTCCATGGCGATTTGTGGGCCAATAATATCATGTTCCAG
TATGGCAGATATGGCGAGGTTCCACTGCAGTGCCGCCTTGTGGACTTCCA
GTTGGCCAGATATGCCCCACCTGTCCTCGATGTCCTGACCGTTCTCACCA
TTCCCACTTCAAAAGAGTTCAGGGACGCCCATCTCAGTGAACTTCTGGCG
GAATACTACCGGTTCATGACCGAGTTCCTGAAGCGTGCTGACTTGGATAT
AGCGCGTTTTATTCCAGAACAGACTTTCTATGAATCCGTGCAAAAGTTTC
GAAGTGTTGGCCTGATCGAAAGCTGTTTGTTCTGTCACCTGGTTATTCTA
CCACCTCACTGCACTCAGAAACTGACCAGTTCTGTGGATGGCTTTAACGA
CTTTTTCACTAATAAACGCATAGAGATTTGCCTGGAGGCCTTCAACACGG
ATGAGTTGTACAGAAGTCGGCTGGTCGACATGATTGAAGACTTTGTAGAT
CAATTTGTTATAAATGTTTAGAATGGATTGGATGAGTTGTTTGTACAGGA
GTCGTTTGGTGAACACTATTCAAGATACTGTGACTAAAAAATATATATAC
GTTCTTTTTACAAATAAAAATGAAAGTGAATTTTCATGTTCAACTAAAAA
AAAAAAAAAAAAA

IP12580.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 10:59:36
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 21088051..21089396 1..1346 6730 100 Plus
chr2L 23010047 chr2L 21089431..21089485 1341..1395 275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 10:59:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21089565..21090910 1..1346 6730 100 Plus
2L 23513712 2L 21090945..21091002 1341..1398 290 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:01:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21089565..21090910 1..1346 6730 100 Plus
2L 23513712 2L 21090945..21091002 1341..1398 290 100 Plus
Blast to na_te.dros performed 2019-03-15 10:59:34
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 6863..7009 1390..1247 125 58.9 Minus

IP12580.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:00:51 Download gff for IP12580.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 21088051..21089396 1..1350 99 <- Plus
chr2L 21089441..21089485 1351..1395 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-09-01 13:17:25 Download gff for IP12580.complete
Subject Subject Range Query Range Percent Splice Strand
CG9259-RA 1..1269 3..1271 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:32:07 Download gff for IP12580.complete
Subject Subject Range Query Range Percent Splice Strand
CG9259-RA 1..1269 3..1271 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:18:23 Download gff for IP12580.complete
Subject Subject Range Query Range Percent Splice Strand
CG9259-RA 1..1269 3..1271 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-01 13:17:25 Download gff for IP12580.complete
Subject Subject Range Query Range Percent Splice Strand
CG9259-RA 1..1346 1..1346 100 -> Plus
CG9259-RA 1387..1435 1347..1395 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:32:07 Download gff for IP12580.complete
Subject Subject Range Query Range Percent Splice Strand
CG9259-RA 19..1364 1..1346 100 -> Plus
CG9259-RA 1405..1453 1347..1395 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:18:23 Download gff for IP12580.complete
Subject Subject Range Query Range Percent Splice Strand
CG9259-RA 19..1364 1..1346 100 -> Plus
CG9259-RA 1405..1453 1347..1395 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:00:51 Download gff for IP12580.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21089565..21090910 1..1346 100 -> Plus
2L 21090951..21090999 1347..1395 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:00:51 Download gff for IP12580.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21089565..21090910 1..1346 100 -> Plus
2L 21090951..21090999 1347..1395 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:00:51 Download gff for IP12580.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21089565..21090910 1..1346 100 -> Plus
2L 21090951..21090999 1347..1395 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:32:07 Download gff for IP12580.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21089565..21090910 1..1346 100 -> Plus
arm_2L 21090951..21090999 1347..1395 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:47:45 Download gff for IP12580.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21089565..21090910 1..1346 100 -> Plus
2L 21090951..21090999 1347..1395 100   Plus

IP12580.hyp Sequence

Translation from 2 to 1270

> IP12580.hyp
MATALELSPTEIRGLCQRYFHQDVSNSDTGFDIVNYTLKPTSDAPAGYLG
SHLYLHVTLKLHNSEEVRQLTFFSKSAPVGNESRMEYLEDFGVFEKEIAV
YQNVLPDLHKACAEVAPKCYYADKNLLIFENLADQGYRMGAGRDGLLTYE
QLHCCLKTLAAMHAGSIIQEQRTGQKIAQSQPKSVVENAYPSDVSPEHMR
MVNFQNACLVLKEFIKLIPKYQSKLDYVLENFTEKMSFIFEAVKTSDVYQ
NTILHGDLWANNIMFQYGRYGEVPLQCRLVDFQLARYAPPVLDVLTVLTI
PTSKEFRDAHLSELLAEYYRFMTEFLKRADLDIARFIPEQTFYESVQKFR
SVGLIESCLFCHLVILPPHCTQKLTSSVDGFNDFFTNKRIEICLEAFNTD
ELYRSRLVDMIEDFVDQFVINV*

IP12580.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG9259-PC 422 CG9259-PC 1..422 1..422 2208 100 Plus
CG9259-PB 422 CG9259-PB 1..422 1..422 2208 100 Plus
CG9259-PA 422 CG9259-PA 1..422 1..422 2208 100 Plus
CG33511-PB 415 CG33511-PB 27..410 33..421 367 28.6 Plus
CG13813-PA 430 CG13813-PA 24..346 40..355 308 28.4 Plus

IP12580.pep Sequence

Translation from 2 to 1270

> IP12580.pep
MATALELSPTEIRGLCQRYFHQDVSNSDTGFDIVNYTLKPTSDAPAGYLG
SHLYLHVTLKLHNSEEVRQLTFFSKSAPVGNESRMEYLEDFGVFEKEIAV
YQNVLPDLHKACAEVAPKCYYADKNLLIFENLADQGYRMGAGRDGLLTYE
QLHCCLKTLAAMHAGSIIQEQRTGQKIAQSQPKSVVENAYPSDVSPEHMR
MVNFQNACLVLKEFIKLIPKYQSKLDYVLENFTEKMSFIFEAVKTSDVYQ
NTILHGDLWANNIMFQYGRYGEVPLQCRLVDFQLARYAPPVLDVLTVLTI
PTSKEFRDAHLSELLAEYYRFMTEFLKRADLDIARFIPEQTFYESVQKFR
SVGLIESCLFCHLVILPPHCTQKLTSSVDGFNDFFTNKRIEICLEAFNTD
ELYRSRLVDMIEDFVDQFVINV*

IP12580.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 19:32:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21063-PA 530 GF21063-PA 1..420 1..420 1874 79.5 Plus
Dana\GF24186-PA 426 GF24186-PA 41..397 33..394 329 27.6 Plus
Dana\GF20040-PA 388 GF20040-PA 4..317 7..328 315 31 Plus
Dana\GF24175-PA 390 GF24175-PA 20..367 30..404 289 25.7 Plus
Dana\GF25316-PA 428 GF25316-PA 24..348 40..355 280 26.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:32:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21275-PA 423 GG21275-PA 1..422 1..421 2135 93.4 Plus
Dere\GG21530-PA 415 GG21530-PA 34..410 43..421 326 27.8 Plus
Dere\GG16090-PA 434 GG16090-PA 24..346 40..355 267 28.1 Plus
Dere\GG21528-PA 388 GG21528-PA 2..340 15..367 257 25.1 Plus
Dere\GG11390-PA 433 GG11390-PA 44..378 28..367 229 25.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 19:32:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10406-PA 415 GH10406-PA 1..412 1..420 1589 67.9 Plus
Dgri\GH23428-PA 428 GH23428-PA 54..420 47..416 321 25.7 Plus
Dgri\GH11335-PA 383 GH11335-PA 5..338 13..367 320 28.3 Plus
Dgri\GH11336-PA 428 GH11336-PA 54..420 47..416 315 25.5 Plus
Dgri\GH23427-PA 383 GH23427-PA 5..338 13..367 314 27.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:53:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG9259-PC 422 CG9259-PC 1..422 1..422 2208 100 Plus
CG9259-PB 422 CG9259-PB 1..422 1..422 2208 100 Plus
CG9259-PA 422 CG9259-PA 1..422 1..422 2208 100 Plus
CG33511-PB 415 CG33511-PB 27..410 33..421 367 28.6 Plus
CG13813-PA 430 CG13813-PA 24..346 40..355 308 28.4 Plus
CG33510-PB 426 CG33510-PB 41..418 33..415 306 25 Plus
CG33509-PA 389 CG33509-PA 7..381 16..416 256 23.8 Plus
CG11878-PA 420 CG11878-PA 31..365 28..367 222 25.4 Plus
CG11892-PA 439 CG11892-PA 95..369 72..348 217 25.9 Plus
CG11892-PB 439 CG11892-PB 95..369 72..348 217 25.9 Plus
CG11891-PI 417 CG11891-PI 56..329 51..328 214 25.9 Plus
CG11891-PH 417 CG11891-PH 56..329 51..328 214 25.9 Plus
CG14314-PA 438 CG14314-PA 84..344 75..327 213 28.4 Plus
CG6830-PA 891 CG6830-PA 541..869 73..407 209 24.8 Plus
CG31974-PD 416 CG31974-PD 35..376 45..371 201 26.1 Plus
CG10562-PA 405 CG10562-PA 21..376 25..384 200 24.4 Plus
CG31087-PB 417 CG31087-PB 62..331 53..327 191 25.3 Plus
CG31087-PA 417 CG31087-PA 62..331 53..327 191 25.3 Plus
CG10550-PD 425 CG10550-PD 25..336 17..327 191 23.2 Plus
CG10550-PC 425 CG10550-PC 25..336 17..327 191 23.2 Plus
CG10550-PB 425 CG10550-PB 25..336 17..327 191 23.2 Plus
CHKov2-PA 409 CG10675-PA 34..391 40..397 188 22.1 Plus
CG10559-PB 415 CG10559-PB 36..365 37..366 187 22.4 Plus
CG31380-PA 405 CG31380-PA 79..345 91..367 184 25.8 Plus
CG16898-PA 407 CG16898-PA 21..310 28..319 182 23.8 Plus
CG31097-PB 420 CG31097-PB 21..327 20..327 182 22.8 Plus
CG31436-PA 420 CG31436-PA 47..337 44..328 181 25.6 Plus
CG31288-PA 428 CG31288-PA 22..333 17..327 181 22.4 Plus
CHKov1-PE 410 CG10618-PE 21..321 25..327 180 25.2 Plus
CG1561-PB 635 CG1561-PB 346..581 127..366 178 27.2 Plus
CG9498-PA 424 CG9498-PA 71..387 64..383 175 24.3 Plus
CG9497-PB 417 CG9497-PB 71..358 68..357 173 25 Plus
CG9497-PA 417 CG9497-PA 71..358 68..357 173 25 Plus
CG6830-PA 891 CG6830-PA 69..442 33..395 168 21.8 Plus
CG31370-PB 396 CG31370-PB 61..321 65..328 168 24.9 Plus
CG5644-PA 459 CG5644-PA 102..356 79..327 160 24.2 Plus
CG13659-PA 417 CG13659-PA 32..354 28..350 159 22 Plus
CG31098-PA 417 CG31098-PA 93..330 93..328 156 25.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 19:32:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23260-PA 413 GI23260-PA 1..412 1..421 1532 67 Plus
Dmoj\GI17843-PA 427 GI17843-PA 54..420 47..416 326 26.5 Plus
Dmoj\GI17842-PA 387 GI17842-PA 5..342 13..368 320 25.2 Plus
Dmoj\GI17844-PA 416 GI17844-PA 1..406 5..416 295 26.9 Plus
Dmoj\GI22566-PA 705 GI22566-PA 33..329 30..327 224 25.5 Plus
Dmoj\GI22566-PA 705 GI22566-PA 330..595 37..308 193 24.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 19:32:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25884-PA 426 GL25884-PA 1..422 1..420 1794 75.6 Plus
Dper\GL25872-PA 415 GL25872-PA 4..410 7..421 343 28 Plus
Dper\GL25871-PA 427 GL25871-PA 43..377 35..374 308 26.9 Plus
Dper\GL25122-PA 439 GL25122-PA 31..350 45..355 285 27.1 Plus
Dper\GL25870-PA 390 GL25870-PA 31..382 43..416 255 24.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:32:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21651-PA 426 GA21651-PA 1..422 1..420 1806 76.3 Plus
Dpse\GA25477-PA 415 GA25477-PA 4..410 7..421 343 28.5 Plus
Dpse\GA25476-PA 427 GA25476-PA 43..419 35..415 312 25.1 Plus
Dpse\GA12548-PA 439 GA12548-PA 31..350 45..355 285 27.1 Plus
Dpse\GA25475-PA 390 GA25475-PA 31..382 43..416 257 24.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:32:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23388-PA 420 GM23388-PA 1..420 1..422 2200 96.4 Plus
Dsec\GM23283-PA 388 GM23283-PA 27..321 33..332 310 29.8 Plus
Dsec\GM23282-PA 426 GM23282-PA 24..378 16..376 301 24.9 Plus
Dsec\GM22264-PA 434 GM22264-PA 24..346 40..355 266 27.1 Plus
Dsec\GM17833-PA 420 GM17833-PA 31..365 28..367 246 25.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 19:32:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24297-PA 422 GD24297-PA 1..422 1..422 2222 97.2 Plus
Dsim\GD21660-PA 389 GD21660-PA 27..342 33..354 321 29.3 Plus
Dsim\GD14862-PA 434 GD14862-PA 24..346 40..355 270 27.4 Plus
Dsim\GD21199-PA 417 GD21199-PA 25..362 19..367 244 24.7 Plus
Dsim\GD21658-PA 288 GD21658-PA 24..284 16..283 226 25.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 19:32:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23771-PA 414 GJ23771-PA 1..412 1..420 1607 68.3 Plus
Dvir\GJ17337-PA 428 GJ17337-PA 40..420 37..416 311 25.8 Plus
Dvir\GJ17336-PA 390 GJ17336-PA 35..377 44..409 304 26.6 Plus
Dvir\GJ17338-PA 392 GJ17338-PA 4..346 7..356 277 27.4 Plus
Dvir\GJ15227-PA 424 GJ15227-PA 71..387 64..383 221 25.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 19:32:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24315-PA 490 GK24315-PA 3..412 2..414 1652 71.4 Plus
Dwil\GK14563-PA 431 GK14563-PA 25..421 16..416 342 23.8 Plus
Dwil\GK11179-PA 428 GK11179-PA 59..416 75..415 303 27.7 Plus
Dwil\GK24715-PA 394 GK24715-PA 43..386 45..395 296 26.8 Plus
Dwil\GK24716-PA 417 GK24716-PA 24..376 33..388 293 26.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:32:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12891-PA 421 GE12891-PA 1..420 1..421 2151 94.1 Plus
Dyak\GE13008-PA 415 GE13008-PA 41..410 47..421 330 27.8 Plus
Dyak\GE19652-PA 434 GE19652-PA 24..346 40..355 279 27.5 Plus
Dyak\GE13007-PA 329 GE13007-PA 2..283 92..378 242 26.1 Plus
Dyak\GE23586-PA 417 GE23586-PA 38..362 38..367 234 25.2 Plus