Clone IP12630 Report

Search the DGRC for IP12630

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:126
Well:30
Vector:pOT2
Associated Gene/Transcriptcomm3-RD
Protein status:IP12630.pep: gold
Preliminary Size:1272
Sequenced Size:1539

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG33209 2005-01-01 Successful iPCR screen
comm3 2008-04-29 Stopped prior to 5.5

Clone Sequence Records

IP12630.complete Sequence

1539 bp assembled on 2011-09-08

GenBank Submission: BT128880.1

> IP12630.complete
TTTTCAGTCGCGCAATGAAGCTCCAGCATCGCGGCTGAGTTTAAGAAAGA
AATATATACGAAAGCACATGTGCCGACTGTACTAAAACTAGTGACAAATA
AATATTACAGAATATATATAATTCTGAAAGATGGCTGATTTACTAAAGGC
TCTGAATATTACGGGCAACCTGCTGGCAGGCCTCGAAGATGCCGGCAATC
TAACGATTGCAACTGCCACAACCACAACTTTAAGTGAAGGCCTTAATGGC
AATGCAACGACCTTGGATGCCGCAGCATCCACCAGTAGTGGCGAAAAACT
CGATCTTGGCGGCTTCGATCTGCCCGGCAACTACTCCATACTCATTAACA
AACTGGAGCAGCTGGCCTTGGGCTTGGATTCGGCCTTGGGAAATTTCACC
ATCGATCGCCAGGAGGTCGAGATCAATTTGAGCGGCGCAGCCACGGCCAA
CGACGTTGCCGATGTAGCCGACGATCTCTTTGATGTCCTGCCAGCTGCTC
GGGCACCTCCGCCGCATATAGCACACGGATCAAGGATATATACCGGCGAC
GATGGCCAGGACTTTGCCCACGTGGTCAGCGATATCTGGATTGGAGTCAT
CCTTACACTGCTCATCGTCTTTGTGATATTCTTCATATGCGCTTGCTTCG
TTTACCACAAATTCCAGCAGTGGAAGAACTCATACCGTGCCAATCACAGT
GATCCCACGATCGAGATCTGCCGCCGCTGTCCGCCGGACTACGAGGCGGA
GTCCCTGCCCTCGTACACGATTGTTTCCGGACTGCCGACGTACGATGATG
CACTGGAGGAGTTCCGCAAGGCGGGCATTATCCTCACACCCGCCATGGTG
CCCATCATCAAGATCTTCGAGTGCAACGAGACCGGCAAGGAGCAGGCGGT
GGGCTACAGCCTGGTGGAGACGAACATAGCGAGTGCGGATGCTGCCGCGG
ATAATGTGTCGCTGGCCTCGACCACCTGCAATTGTGGCAACTCCTCGCCC
ACCTCATCGCTGCCCAGTTACAGTGCCGCCACGGCGGCTGTGATGGCAGC
GGCGGCTGCTGCTCCTCCCCAGGTGATCGAACTATCACCGGAACACCTGG
CCTCGTTGTCCCAGAAGCGTCTCTCCCTGCAGATCTCATTCAATAACTCG
GTGCGCCGGCAGTCGCCGCTCAGGAATCATCTGCTGAGATCCCGAGCGGT
GGGAAATACCGCCGGTGTTGGTCCATCGGAGGCAGCCGGTCCTGCCATTC
ACGGGTCGGGAGCTCACGGAGTCCATGGCGGCGGAGGTGCAACCATTCTG
CCCGTTCTGCATCGCTCCTCCTCTACAATTTCACTGTCCAACGAACGCCA
GTTGCTGGATCAACGCCTCAGGCATTTGCATCATCGCGGTTCCCTCTACT
GAGAACCCATATAGAGCATTCAAACTGCCTGACTAATCCTTCCTAAAGGG
TATTCCCTATGTTAATCATATGCCAAGAGTTGTTAGTTTTAAGACACAGA
CATAATAAACATGCGTTGTTTTTGAAAAAAAAAAAAAAA

IP12630.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 10:55:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 15603110..15603950 1524..684 4145 99.5 Minus
chr3L 24539361 chr3L 15621828..15622510 683..1 3400 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 10:55:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15613181..15614022 1525..684 4210 100 Minus
3L 28110227 3L 15631898..15632580 683..1 3415 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:01:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 15606281..15607122 1525..684 4210 100 Minus
3L 28103327 3L 15624998..15625680 683..1 3415 100 Minus
Blast to na_te.dros performed on 2019-03-15 10:55:52 has no hits.

IP12630.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 10:56:58 Download gff for IP12630.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 15603110..15603950 684..1524 99 <- Minus
chr3L 15621828..15622510 1..683 99   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-09-08 16:20:00 Download gff for IP12630.complete
Subject Subject Range Query Range Percent Splice Strand
comm3-RD 1..1272 131..1402 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:29:17 Download gff for IP12630.complete
Subject Subject Range Query Range Percent Splice Strand
comm3-RD 1..1272 131..1402 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:15:41 Download gff for IP12630.complete
Subject Subject Range Query Range Percent Splice Strand
comm3-RD 1..1272 131..1402 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-08 16:19:59 Download gff for IP12630.complete
Subject Subject Range Query Range Percent Splice Strand
comm3-RD 1..1522 1..1522 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:29:17 Download gff for IP12630.complete
Subject Subject Range Query Range Percent Splice Strand
comm3-RD 1..1522 1..1522 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:15:41 Download gff for IP12630.complete
Subject Subject Range Query Range Percent Splice Strand
comm3-RD 1..1522 1..1522 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:56:58 Download gff for IP12630.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15613182..15614022 684..1524 100 <- Minus
3L 15631898..15632580 1..683 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:56:58 Download gff for IP12630.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15613182..15614022 684..1524 100 <- Minus
3L 15631898..15632580 1..683 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:56:58 Download gff for IP12630.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15613182..15614022 684..1524 100 <- Minus
3L 15631898..15632580 1..683 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:29:17 Download gff for IP12630.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15606282..15607122 684..1524 100 <- Minus
arm_3L 15624998..15625680 1..683 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:48:03 Download gff for IP12630.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15606282..15607122 684..1524 100 <- Minus
3L 15624998..15625680 1..683 100   Minus

IP12630.hyp Sequence

Translation from 130 to 1401

> IP12630.hyp
MADLLKALNITGNLLAGLEDAGNLTIATATTTTLSEGLNGNATTLDAAAS
TSSGEKLDLGGFDLPGNYSILINKLEQLALGLDSALGNFTIDRQEVEINL
SGAATANDVADVADDLFDVLPAARAPPPHIAHGSRIYTGDDGQDFAHVVS
DIWIGVILTLLIVFVIFFICACFVYHKFQQWKNSYRANHSDPTIEICRRC
PPDYEAESLPSYTIVSGLPTYDDALEEFRKAGIILTPAMVPIIKIFECNE
TGKEQAVGYSLVETNIASADAAADNVSLASTTCNCGNSSPTSSLPSYSAA
TAAVMAAAAAAPPQVIELSPEHLASLSQKRLSLQISFNNSVRRQSPLRNH
LLRSRAVGNTAGVGPSEAAGPAIHGSGAHGVHGGGGATILPVLHRSSSTI
SLSNERQLLDQRLRHLHHRGSLY*

IP12630.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:20:12
Subject Length Description Subject Range Query Range Score Percent Strand
comm3-PE 423 CG42334-PE 1..423 1..423 2158 100 Plus
comm3-PD 423 CG42334-PD 1..423 1..423 2158 100 Plus
comm3-PC 378 CG42334-PC 141..378 186..423 1213 100 Plus
comm2-PA 343 CG7554-PA 113..286 144..310 222 30.2 Plus

IP12630.pep Sequence

Translation from 130 to 1401

> IP12630.pep
MADLLKALNITGNLLAGLEDAGNLTIATATTTTLSEGLNGNATTLDAAAS
TSSGEKLDLGGFDLPGNYSILINKLEQLALGLDSALGNFTIDRQEVEINL
SGAATANDVADVADDLFDVLPAARAPPPHIAHGSRIYTGDDGQDFAHVVS
DIWIGVILTLLIVFVIFFICACFVYHKFQQWKNSYRANHSDPTIEICRRC
PPDYEAESLPSYTIVSGLPTYDDALEEFRKAGIILTPAMVPIIKIFECNE
TGKEQAVGYSLVETNIASADAAADNVSLASTTCNCGNSSPTSSLPSYSAA
TAAVMAAAAAAPPQVIELSPEHLASLSQKRLSLQISFNNSVRRQSPLRNH
LLRSRAVGNTAGVGPSEAAGPAIHGSGAHGVHGGGGATILPVLHRSSSTI
SLSNERQLLDQRLRHLHHRGSLY*

IP12630.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 19:34:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10387-PA 200 GF10387-PA 1..186 1..185 784 82.3 Plus
Dana\GF10388-PA 254 GF10388-PA 6..159 185..336 540 77.9 Plus
Dana\GF10377-PA 329 GF10377-PA 106..219 144..252 209 35 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:34:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13532-PA 425 GG13532-PA 1..425 1..423 2181 97.6 Plus
Dere\GG13522-PA 342 GG13522-PA 113..229 144..255 203 32.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 19:34:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23316-PA 431 GH23316-PA 1..431 1..423 1451 71.7 Plus
Dgri\GH10048-PA 253 GH10048-PA 7..253 184..423 744 70.1 Plus
Dgri\GH14476-PA 338 GH14476-PA 115..226 144..247 198 32.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:46:54
Subject Length Description Subject Range Query Range Score Percent Strand
comm3-PE 423 CG42334-PE 1..423 1..423 2158 100 Plus
comm3-PD 423 CG42334-PD 1..423 1..423 2158 100 Plus
comm3-PC 378 CG42334-PC 141..378 186..423 1213 100 Plus
comm2-PA 343 CG7554-PA 113..286 144..310 222 30.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 19:34:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13626-PA 435 GI13626-PA 1..435 1..423 1410 71.4 Plus
Dmoj\GI13622-PA 333 GI13622-PA 113..224 144..247 199 33.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 19:34:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25498-PA 209 GL25498-PA 1..182 1..184 737 82 Plus
Dper\GL25481-PA 344 GL25481-PA 101..289 130..312 217 28.6 Plus
Dper\GL25499-PA 68 GL25499-PA 1..68 351..423 201 63 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:34:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17371-PA 422 GA17371-PA 1..422 1..423 1661 80.2 Plus
Dpse\GA20435-PA 348 GA20435-PA 101..289 130..312 217 28.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:34:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24476-PA 423 GM24476-PA 1..423 1..423 2212 99.3 Plus
Dsec\GM24466-PA 274 GM24466-PA 113..235 144..268 224 33.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 19:34:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12549-PA 241 GD12549-PA 4..241 186..423 1227 98.3 Plus
Dsim\GD12539-PA 339 GD12539-PA 113..229 144..255 207 33.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 19:34:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13964-PA 439 GJ13964-PA 1..439 1..423 1448 71.7 Plus
Dvir\GJ13958-PA 334 GJ13958-PA 112..225 144..252 206 34.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 19:34:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20752-PA 455 GK20752-PA 1..455 1..423 1505 72.2 Plus
Dwil\GK20674-PA 361 GK20674-PA 138..230 144..230 202 37.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:34:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19827-PA 423 GE19827-PA 1..423 1..423 2169 97.2 Plus
Dyak\GE22836-PA 186 GE22836-PA 1..185 1..185 944 96.8 Plus
Dyak\GE19814-PA 341 GE19814-PA 113..229 144..255 202 32.2 Plus
Dyak\GE22823-PA 339 GE22823-PA 113..229 144..255 202 32.2 Plus