Clone IP12634 Report

Search the DGRC for IP12634

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:126
Well:34
Vector:pOT2
Associated Gene/TranscriptCG3739-RB
Protein status:IP12634.pep: gold
Preliminary Size:1644
Sequenced Size:1602

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3739 2005-01-01 Successful iPCR screen
CG3739 2008-04-29 Release 5.5 accounting
CG3739 2008-08-15 Release 5.9 accounting
CG3739 2008-12-18 5.12 accounting

Clone Sequence Records

IP12634.complete Sequence

1602 bp (1602 high quality bases) assembled on 2005-04-11

GenBank Submission: BT022905

> IP12634.complete
TGAACTATCCAGCAATATGAAGTATACCCTAGTAGTGCTCGCCCTGCTTG
CACCTCTGACTGCAGCAGCTAGTCTGGGTGAACAGAAACCGGAGGCGAAT
GCGTTCGTCAAATCTCTGAGAGAACTGCACCGAGGTCCTCCAGTTGAACC
AATGAAGACCAGGGCTAAGGTGGAGGAGCGCTGGATCACCCAGAAACTAG
ATAACTTCGATGACAGCAACAACGCCACCTGGCAGGATCGAATCTATATC
AACAACAAGTACTTCGTTGATGGCTCTCCCATCTTTATCTACTTGGGCGG
CGAGTGGGCTATCGATCCTAGTGGGATTACCTCTGGACTATGGAAGGACA
TTGCTAAGCAGCACAACGGCTCCCTTCTCTACACTGAACATCGCTTCTTT
GGCCAGAGTATCCCTATAACTCCTCTGTCCACTGAGAATTTGGCCAAATA
CCAGAGCGTGGAGCAGGCCCTGGCTGATGTGATTAACGTGATTGCCACGC
TGAAGCAGGAGGACAAGTACAAGGACTCCAAGGTTGTGGTCTCTGGTTGC
TCCTACTCGGCAACCATGGCCACCTGGATCAGGAAGCTCTATCCGGAAAT
CATCAGGGGCAGCTGGGCCTCGTCTGCACCACTCCTGGCTAAGGTGAACT
TCAAGGACTACATGAAGGTGGTCGGCGAGTCGTACGCTACCCTTGGAGGA
CAATATTGCTATGATCTGATCGATAACGCCACCTCGTACTATGAAAATCT
GTTCGAGATTGGAAATGGCACTCAGGCTGTGAAGGAATTGAACTTGTGCT
CCAACTTTAATGTAAACAGCGAACAAGACCGTTGGCAGATCTTCAGCACT
ATTGCAAACATTTTTGCTGGCATTGCTCAGTACCAAAAACCAGAGAAATA
TGATATACCCACCTACTGCTCGATCCTGAGAGAGTTCAGTGACGATGATT
CTGTTGCTTTGTCCAAGTTCATTAATTGGAAAATCAATGAGCATTCCGGA
GCTTGCCTTAGCACGACCTTTAAGGGAGCTGTTGGCTACTACGAATGGTC
TAAGGAGAACTACCAGGATAGTGACTTGCCCTGGATTTTCCAGACCTGCA
GCGAGTTCGGATGGTTCCAGTCTTCCGGCAGCAGAAGCCAACCCTTTGGA
TCCACTTTTCCGGCCACTCTCTATGAGGACACCTGCGAGGGGGTCTTTGG
AGCGAAGTACGACTCGGCTGGCATCCACGCTAATATCCGCGCAACAAACG
ATGACTTCGGTGGCCTAAACGTTAATGCCACCAACATCTATTTTGTGCAG
GGAGCTCTTGACGGTTGGAGTAAGGTGGGTGCTGGAGTTGCCCAGGGAGC
CACCATTATCCCATACGCCTCCCATTGTCCCGATACTGGATCGATCAGTG
CCAGCGATAGTGCCGAACTGGTGGCCTCCAAGAAAAAGCTGATCAAGCTC
GTGGCCCAATGGCTGGAGGATTAATTTCTCGAACAACGATTTTAATTAGT
TTAGAAGATATTGTCAGTTTTTTTGTTTTAAATGTATAACTATTTAACCA
CCAGTGATTGAACCTAATAAACCGAATATTAAATATAAAAAAAAAAAAAA
AA

IP12634.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:37:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG3739-RA 1760 CG3739-RA 171..1757 1..1587 7935 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:04:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 15218562..15219076 1072..1586 2545 99.6 Plus
chr3R 27901430 chr3R 15217792..15218259 421..888 2295 99.4 Plus
chr3R 27901430 chr3R 15217248..15217485 1..238 1160 99.2 Plus
chr3R 27901430 chr3R 15218315..15218498 889..1072 920 100 Plus
chr3R 27901430 chr3R 15217551..15217729 242..420 880 99.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:16:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:04:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19394673..19395194 1071..1592 2595 99.8 Plus
3R 32079331 3R 19393904..19394371 421..888 2340 100 Plus
3R 32079331 3R 19393360..19393597 1..238 1190 100 Plus
3R 32079331 3R 19394427..19394610 889..1072 920 100 Plus
3R 32079331 3R 19393660..19393841 239..420 910 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:28:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 19135504..19136025 1071..1592 2595 99.8 Plus
3R 31820162 3R 19134735..19135202 421..888 2340 100 Plus
3R 31820162 3R 19134191..19134428 1..238 1190 100 Plus
3R 31820162 3R 19135258..19135441 889..1072 920 100 Plus
3R 31820162 3R 19134491..19134672 239..420 910 100 Plus
Blast to na_te.dros performed on 2019-03-16 16:04:37 has no hits.

IP12634.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:05:18 Download gff for IP12634.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 15217248..15217485 1..238 99 -> Plus
chr3R 15217548..15217729 239..420 98 -> Plus
chr3R 15217792..15218259 421..888 99 -> Plus
chr3R 15218315..15218496 889..1070 100 -> Plus
chr3R 15218561..15219076 1071..1586 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:53:09 Download gff for IP12634.complete
Subject Subject Range Query Range Percent Splice Strand
CG3739-RA 171..1644 1..1474 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:03:19 Download gff for IP12634.complete
Subject Subject Range Query Range Percent Splice Strand
CG3739-RA 171..1644 1..1474 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:59:10 Download gff for IP12634.complete
Subject Subject Range Query Range Percent Splice Strand
CG3739-RB 1..1458 17..1474 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:48:05 Download gff for IP12634.complete
Subject Subject Range Query Range Percent Splice Strand
CG3739-RA 171..1644 1..1474 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:18:30 Download gff for IP12634.complete
Subject Subject Range Query Range Percent Splice Strand
CG3739-RB 1..1458 17..1474 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:49:00 Download gff for IP12634.complete
Subject Subject Range Query Range Percent Splice Strand
CG3739-RA 171..1756 1..1586 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:03:19 Download gff for IP12634.complete
Subject Subject Range Query Range Percent Splice Strand
CG3739-RA 171..1756 1..1586 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:59:10 Download gff for IP12634.complete
Subject Subject Range Query Range Percent Splice Strand
CG3739-RB 1..1586 1..1586 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:48:05 Download gff for IP12634.complete
Subject Subject Range Query Range Percent Splice Strand
CG3739-RA 171..1756 1..1586 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:18:30 Download gff for IP12634.complete
Subject Subject Range Query Range Percent Splice Strand
CG3739-RB 1..1586 1..1586 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:05:18 Download gff for IP12634.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19393360..19393597 1..238 100 -> Plus
3R 19393660..19393841 239..420 100 -> Plus
3R 19393904..19394371 421..888 100 -> Plus
3R 19394427..19394608 889..1070 100 -> Plus
3R 19394673..19395188 1071..1586 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:05:18 Download gff for IP12634.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19393360..19393597 1..238 100 -> Plus
3R 19393660..19393841 239..420 100 -> Plus
3R 19393904..19394371 421..888 100 -> Plus
3R 19394427..19394608 889..1070 100 -> Plus
3R 19394673..19395188 1071..1586 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:05:18 Download gff for IP12634.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19393360..19393597 1..238 100 -> Plus
3R 19393660..19393841 239..420 100 -> Plus
3R 19393904..19394371 421..888 100 -> Plus
3R 19394427..19394608 889..1070 100 -> Plus
3R 19394673..19395188 1071..1586 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:59:10 Download gff for IP12634.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15219082..15219319 1..238 100 -> Plus
arm_3R 15219382..15219563 239..420 100 -> Plus
arm_3R 15219626..15220093 421..888 100 -> Plus
arm_3R 15220149..15220330 889..1070 100 -> Plus
arm_3R 15220395..15220910 1071..1586 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:23:04 Download gff for IP12634.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19134191..19134428 1..238 100 -> Plus
3R 19134491..19134672 239..420 100 -> Plus
3R 19134735..19135202 421..888 100 -> Plus
3R 19135258..19135439 889..1070 100 -> Plus
3R 19135504..19136019 1071..1586 100   Plus

IP12634.hyp Sequence

Translation from 0 to 1473

> IP12634.hyp
ELSSNMKYTLVVLALLAPLTAAASLGEQKPEANAFVKSLRELHRGPPVEP
MKTRAKVEERWITQKLDNFDDSNNATWQDRIYINNKYFVDGSPIFIYLGG
EWAIDPSGITSGLWKDIAKQHNGSLLYTEHRFFGQSIPITPLSTENLAKY
QSVEQALADVINVIATLKQEDKYKDSKVVVSGCSYSATMATWIRKLYPEI
IRGSWASSAPLLAKVNFKDYMKVVGESYATLGGQYCYDLIDNATSYYENL
FEIGNGTQAVKELNLCSNFNVNSEQDRWQIFSTIANIFAGIAQYQKPEKY
DIPTYCSILREFSDDDSVALSKFINWKINEHSGACLSTTFKGAVGYYEWS
KENYQDSDLPWIFQTCSEFGWFQSSGSRSQPFGSTFPATLYEDTCEGVFG
AKYDSAGIHANIRATNDDFGGLNVNATNIYFVQGALDGWSKVGAGVAQGA
TIIPYASHCPDTGSISASDSAELVASKKKLIKLVAQWLED*

IP12634.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:49:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG3739-PB 485 CG3739-PB 1..485 6..490 2566 100 Plus
CG18493-PA 480 CG18493-PA 6..479 10..488 1199 48.6 Plus
CG3734-PB 473 CG3734-PB 10..473 23..489 948 41.1 Plus
CG3734-PA 473 CG3734-PA 10..473 23..489 948 41.1 Plus
CG9953-PA 508 CG9953-PA 55..501 58..489 555 30.4 Plus

IP12634.pep Sequence

Translation from 1 to 1473

> IP12634.pep
ELSSNMKYTLVVLALLAPLTAAASLGEQKPEANAFVKSLRELHRGPPVEP
MKTRAKVEERWITQKLDNFDDSNNATWQDRIYINNKYFVDGSPIFIYLGG
EWAIDPSGITSGLWKDIAKQHNGSLLYTEHRFFGQSIPITPLSTENLAKY
QSVEQALADVINVIATLKQEDKYKDSKVVVSGCSYSATMATWIRKLYPEI
IRGSWASSAPLLAKVNFKDYMKVVGESYATLGGQYCYDLIDNATSYYENL
FEIGNGTQAVKELNLCSNFNVNSEQDRWQIFSTIANIFAGIAQYQKPEKY
DIPTYCSILREFSDDDSVALSKFINWKINEHSGACLSTTFKGAVGYYEWS
KENYQDSDLPWIFQTCSEFGWFQSSGSRSQPFGSTFPATLYEDTCEGVFG
AKYDSAGIHANIRATNDDFGGLNVNATNIYFVQGALDGWSKVGAGVAQGA
TIIPYASHCPDTGSISASDSAELVASKKKLIKLVAQWLED*

IP12634.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 15:20:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16550-PA 489 GF16550-PA 8..488 10..490 2034 76.1 Plus
Dana\GF16549-PA 489 GF16549-PA 8..486 10..488 1958 73.9 Plus
Dana\GF16547-PA 480 GF16547-PA 6..479 10..488 1235 49.7 Plus
Dana\GF16548-PA 390 GF16548-PA 8..283 10..296 1018 67.6 Plus
Dana\GF16546-PA 473 GF16546-PA 1..473 6..489 974 41 Plus
Dana\GF16548-PA 390 GF16548-PA 286..384 392..490 354 63.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 15:20:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23262-PA 485 GG23262-PA 1..485 6..490 2427 95.7 Plus
Dere\GG23250-PA 480 GG23250-PA 6..479 10..488 1190 48.6 Plus
Dere\GG23239-PA 473 GG23239-PA 7..473 11..489 924 39.4 Plus
Dere\GG23317-PA 486 GG23317-PA 29..484 41..486 681 34 Plus
Dere\GG14395-PA 508 GG14395-PA 55..500 58..488 539 29.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 15:20:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22293-PA 481 GH22293-PA 1..480 6..488 1680 62.5 Plus
Dgri\GH22292-PA 480 GH22292-PA 28..479 34..488 1626 64.2 Plus
Dgri\CpepX-PA 478 GH22291-PA 24..477 29..488 1137 46.9 Plus
Dgri\GH22390-PA 497 GH22390-PA 45..493 55..486 683 33.8 Plus
Dgri\GH22290-PA 633 GH22290-PA 290..632 142..488 665 40 Plus
Dgri\GH22290-PA 633 GH22290-PA 1..285 6..293 652 44.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:01:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG3739-PB 485 CG3739-PB 1..485 6..490 2566 100 Plus
CG18493-PA 480 CG18493-PA 6..479 10..488 1199 48.6 Plus
CG3734-PB 473 CG3734-PB 10..473 23..489 948 41.1 Plus
CG3734-PA 473 CG3734-PA 10..473 23..489 948 41.1 Plus
CG9953-PA 508 CG9953-PA 55..501 58..489 555 30.4 Plus
CG11626-PB 379 CG11626-PB 1..375 117..484 499 32 Plus
CG2493-PB 475 CG2493-PB 32..474 54..490 294 25.4 Plus
CG2493-PA 475 CG2493-PA 32..474 54..490 294 25.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 15:20:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23100-PA 882 GI23100-PA 441..881 42..488 1587 64.2 Plus
Dmoj\GI24473-PA 483 GI24473-PA 1..482 6..488 1553 59.8 Plus
Dmoj\GI23100-PA 882 GI23100-PA 12..441 16..452 1047 45 Plus
Dmoj\GI23097-PA 691 GI23097-PA 224..691 11..488 962 41.7 Plus
Dmoj\GI23098-PA 386 GI23098-PA 2..386 80..489 816 40.4 Plus
Dmoj\GI24472-PA 499 GI24472-PA 1..497 6..489 683 33.7 Plus
Dmoj\GI23097-PA 691 GI23097-PA 8..208 11..217 495 47.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 15:20:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12648-PA 485 GL12648-PA 1..483 6..488 1788 71.2 Plus
Dper\GL12647-PA 479 GL12647-PA 4..478 6..488 1208 47.1 Plus
Dper\GL12646-PA 473 GL12646-PA 5..473 16..489 928 39.2 Plus
Dper\GL12651-PA 482 GL12651-PA 19..480 14..486 674 32.5 Plus
Dper\GL15050-PA 508 GL15050-PA 57..503 58..489 555 30.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 15:20:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17653-PA 485 GA17653-PA 1..483 6..488 1793 71.4 Plus
Dpse\GA14959-PA 479 GA14959-PA 4..478 6..488 1208 47.1 Plus
Dpse\GA23306-PA 292 GA23306-PA 1..292 6..296 1154 77.1 Plus
Dpse\GA17650-PA 473 GA17650-PA 5..473 6..489 929 38.6 Plus
Dpse\GA11106-PA 482 GA11106-PA 19..480 14..486 667 32.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 15:20:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26836-PA 473 GM26836-PA 7..473 11..489 975 41.5 Plus
Dsec\GM26837-PA 267 GM26837-PA 135..267 358..490 712 99.2 Plus
Dsec\GM26842-PA 487 GM26842-PA 46..485 55..486 684 34.2 Plus
Dsec\GM14810-PA 508 GM14810-PA 55..501 58..489 553 30.4 Plus
Dsec\GM26837-PA 267 GM26837-PA 6..131 10..134 327 49.2 Plus
Dsec\GM23324-PA 475 GM23324-PA 32..474 54..490 293 25.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 15:20:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19287-PA 530 GD19287-PA 181..530 141..490 1866 99.4 Plus
Dsim\GD19291-PA 487 GD19291-PA 46..485 55..486 681 33.9 Plus
Dsim\GD19284-PA 515 GD19284-PA 7..281 11..293 649 45.6 Plus
Dsim\GD13982-PA 508 GD13982-PA 55..501 58..489 542 30 Plus
Dsim\GD19287-PA 530 GD19287-PA 1..199 117..314 501 48 Plus
Dsim\GD19285-PA 178 GD19285-PA 50..178 361..489 348 47.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 15:20:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22720-PA 487 GJ22720-PA 2..486 6..488 1742 66.8 Plus
Dvir\GJ22719-PA 478 GJ22719-PA 14..477 19..488 1147 47.6 Plus
Dvir\GJ22718-PA 476 GJ22718-PA 8..476 11..489 1007 42.4 Plus
Dvir\GJ24539-PA 489 GJ24539-PA 18..484 21..486 676 34 Plus
Dvir\GJ13120-PA 513 GJ13120-PA 44..504 45..489 526 28.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 15:20:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13808-PA 445 GK13808-PA 1..444 39..488 1187 49.4 Plus
Dwil\GK13807-PA 481 GK13807-PA 3..481 10..489 905 40 Plus
Dwil\GK13809-PA 340 GK13809-PA 148..340 296..490 655 64.1 Plus
Dwil\GK16991-PA 512 GK16991-PA 52..506 51..490 541 30.6 Plus
Dwil\GK13809-PA 340 GK13809-PA 1..166 2..159 530 62.3 Plus
Dwil\GK13814-PA 303 GK13814-PA 1..301 189..486 395 31.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 15:20:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25604-PA 485 GE25604-PA 1..485 6..490 2546 96.7 Plus
Dyak\GE25601-PA 485 GE25601-PA 1..485 6..490 2546 96.7 Plus
Dyak\GE25600-PA 480 GE25600-PA 6..479 10..488 1204 48.4 Plus
Dyak\GE25599-PA 473 GE25599-PA 7..473 11..489 952 40.9 Plus
Dyak\GE21585-PA 508 GE21585-PA 45..501 48..489 554 29.6 Plus