Clone IP12648 Report

Search the DGRC for IP12648

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:126
Well:48
Vector:pOT2
Associated Gene/Transcriptsun-RB
Protein status:IP12648.pep: gold
Preliminary Size:1566
Sequenced Size:3735

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5917 2005-01-01 Successful iPCR screen
sun 2008-04-29 Release 5.5 accounting
sun 2008-08-15 Release 5.9 accounting
CG34420 2008-08-15 Release 5.9 accounting
sun 2008-12-18 5.12 accounting
CG34420 2008-12-18 5.12 accounting

Clone Sequence Records

IP12648.complete Sequence

3735 bp (3735 high quality bases) assembled on 2006-09-20

GenBank Submission: BT029092

> IP12648.complete
TTTTTTTTTTTTTTTTTTTTATTTTTGTAGAATTTTTCTTTTATTTCCGG
TTTATTTTTATGGAAATGCGTGTCGTTCTATTCGAGTGCACGCATTGCTT
CTGCTGCATTTTACTTTTATTTTGCGTTTTTTTTTTCGAGTGGTATATAT
GTATATATGTAGCTATGCATACACGAACAACATTTCGTTTTTTGATTTTG
TTTTTCCGATTTTTCATTTGTGTTTTGTTAACTAACCTAATACAGATATT
CAGATGGATTCACATGCAGCCAGGGTGAAAAATCTCATTTTAATTGAATT
GCTGGCGTTGCTTACAGTTTTGTATGTTGTTTGACCCTATGATCCTGGCA
TAAATGCCAACTGCTGCAATTAATTCGTTTCGATGATTAATACAAGTATT
CGTTTGTATTTATGTATGTGTGATGTTTGTGATTAAATATATTGCGCTTA
ATTGCGATAATTTGCGTGAATCATTGATGTGTGCCCTACATATATAATAC
AGTCACAGGCAAGCCAAGAACGATTTCGGTTTGCGGTTCGGTGCTCGCTG
CGTCGCGCATACGCCCCATGGTACAGCAACATCAATAAGTATCCGCATTG
TGCATAAATTATGCATTGCCACAACACCAAATAAGTATAGCTGCAAACAA
TTATGGGCTAAATACTAGTACATTTATTATTATTATTTATTCATACGCCT
ATCAATGCAACCTATGGAAGTAAATTACGAGTACACACTATTTATTCACG
AGGTTCGCCACGACAGTTCTTCGTTCACTTTTCGACCAGAGGGGGCAAGT
GATGGCAGCACAAAGGATCTAGTTTATGTACATATTGGCTTCTTTAACGA
ATTTCCAATTGGCTTTATCAATATGTGTTTCTCATTCCCAAAGAAAATAA
TGAAATATTGAATATCTAAAGAAAAAGTATTCCCTTGAAATTGAACTGTT
TTAAAGACCCTTCCCGGGTTTTCAGTACCTCAGTAAACGCCCTCCTTTCC
CGAAATCTCGGCGAGCCGAACCGCAAGCCAAAATCTCTTATGTTAATTCC
AGTTTACTGAAACAGTTCGCTGACCGTAAAACTCGTTGTCGTGGCCGCGA
TGACCGCCGGATTGGTGCGATTGGAGACGGAGTCCCTCGACTCCGGACCG
CGTTGCCAGAAGTGCTCCCCCGTCAAGGTGGCAGTGGTTCGATTGGCCCG
CTCCATGGGCGGCTCATCGCGTCGCTGCCTCACCGCCTGCGCCTGCGGTC
ACGAGGACATGTAGGTGCACTGCGTCTTGGGCTGCGGCTCCGTCTGCTCA
ATGGGCTGGATGGCCGCTCGCTTCCAGTAATCCCGCACCGTTTCCACCGT
TTCCATGATGCGCAGAAAATTCCTGCCCGCGAGCATGGCCACATCCTCCT
CGCTCCAGTTGTGATCCTCCAGCAGGGCGGCCAAGAGCTCGGGATATTTG
GACACATCCTCCAGTCCCAAGGGCGGCAGCTCGATGCCATCGTATCCGGC
TCCCAATCCAATGTGCTGTATGCCGGCAATGGCCCGCACATACTTAATGT
GCTCGATCACGTCCTGGAGGCGCGCCTGCCGCCCACATGCCACATCCTCG
GAGTCAAAGCTCAGCATGATAAGACCCCCGTTCTCGGCCACCAGGCGTAA
GATGTCATCCGGCACATTTCTCGTCGAATTGCACAGCTGGCGGGCGGCGG
AATGAGAGAAGATGACCGGAGCGCGGGTCACCTGAAGTACATCCCTGGCC
GTGGCATCCGAGCTGTGCGACAGATCTATCATCATGCCCAGCCGGTTCAT
CTCACGCACAATCGCCTTGCCAAAGGGCGTGAGTCCCTGTTCCGCCGGCG
ATGCACTCGATCCTGCCCATGAGACGTCACAGCGATGGGTCAGGCTGAGA
TAGCGTGCGCCCAGTGAGTAAAAGGATCGCAGGACTCCCAGGGAGGAGCC
AATCGTGTGGCCACCTTCCACGCCAATTAGCGAGGCCAGGAGTCCCCGGC
GATGTGCATCGACAATGTCCTGCGAGGATGTGGCCAGCACCGTTTCCCGG
GCGTACATGTCCGACAATCGCCGCACAATGTCGATCTGCTCCAGAGCCAA
CTGGACCGCGTCCAAGCCTTGCGCCTCGCACGGCACATATGCTGACCACA
CTTGGACGCTGACTAATCCCTGCTTGAGTCGCTCCATGTCCGTTTGCGCC
CACGCCGGTCGCGACCACAGTGATTTGTGGTCCACGTCGTGGCTGAGATG
GAGTTCGAGGCTGCTGTGGGCGTACTTGCGAACATTCCAGGCATAATTGT
TGTGCCCGTCGACCAGCGGCACCTCACGCAGGATTCGACGAACGATTCTC
AGTCTTTGGGCATGGGAATTGCGGCTGGGCGCCATAAGGAAGTGCTGGTA
GGCCAAAGTGGCGGCGATGGCCAGTAGACAGATGGCGCTGACCAGGGTGA
TGGCCACCAGCCAGGATCCTCTCCTGCCCTTCTGTCCGCCATCTGGTCCG
GCATTCGCCTTCCTTGACGCCTTTCCCTTCGCTTTACCAGTGGCGCCAGC
TCCAGTCGTGGAACCCAGCGATGTGGGCGACTTGGCGTCCAGACCAACTA
TATCTCCACCGACGACCACGCCGCCGGCGAGGGGATTGCCAAAGTTCACC
TTTGACTTCTGGATGCTGGCTATCTCGCCGCCGGAATCGCTGTTCGAGAT
CGAGTTCTGGCGGGACAGTGTGCGGCGGATGTTCGAGTGCTCGGTGACGT
CGGGCAATCCACCGAAACCAGTTGTCTGGTAGTCCATGTAGTTGTCGAAG
TGCATGTAGGAGCAGCTACCCGCATCTCCCGGTCCACCCGGTATGGGCAG
CCCATTCTCGTCTAGCTCAACGGCTGGTGGCGGCGGTGGCGACGGCGGTG
GCAGGTTGTCGCCCTTGAAGGAAACCCGCTTAGGTTTGCCCTGACCGCCG
GCCAGACGACGGCCCCGACCCAAGGTGCCAGAGCCCATCATGTAGGCCAG
CGAACCACAGCCCACCACTGCATCCTGCTGCTGGTGGTGCTGTTGCAGGG
ACTGAAGGCCGCACGCTCCGAAGCGAAAGTGCGGAATGCAGGTGGTGGTC
ATGCTGCCCGCACCGCATTCACTGCCCTCGAAATCCGACTCGACGTCCGT
AACGAAGGCGGCGGGCTGGAAACCGCGCGGCAAAGTAGCCGCCACCGAGG
GATTTGGATTGGGATTTATGTTTGGATTATGCCCGCCACCACCCGATGCC
GGCATCCTTTGGCGTCCCAGTGTTCCGGTGCACAGGATATTCATTTGCTG
TGGATGGGAATATCTTATATATTTTTTGTGTAGCGTGAATATATTTCGAA
TAAACCGATCACAATGACTGCCTGGAGAGCTGCCGGAATTACCTACATCC
AATACTCCAACATCGCCGCTCGCATTTTGCGCGAGTCCTTGAAGACGGGA
CTGCGTGCGGATGCCGCCAAGCGCGACGCGAGCCATGTGAAGTTCACTCC
CTGGGCAAATGGCAAGCCAGCTCATGAAAGGGCTTAGGTGTTCCATCGTC
AAATTAATAATTTAAAAACTGGCAGCGTCAAACCCAATCGGAATCCTAGA
TGCTTTTCAGTGGCCACTCGAGAATGATTCGCAACAACTAAGATCCGCCG
AAGCTGCAATGTTGTAAAATCATGAAAAATAAATAAAATTAAATAAATGT
AATTTATTTAAACACGATGAAAAAAAAAAAAAAAA

IP12648.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:15:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG34420-RC 3949 CG34420-RC 664..3949 3306..22 16390 99.9 Minus
sun-RB 998 sun-RB 147..561 3306..3720 2075 100 Plus
sun-RA 948 sun-RA 147..365 3306..3524 1095 100 Plus
sun-RA 948 sun-RA 364..511 3573..3720 740 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:20:07
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 11841279..11843407 20..2147 10415 99.4 Plus
chr3L 24539361 chr3L 11845030..11845663 2145..2778 3110 99.4 Plus
chr3L 24539361 chr3L 11853071..11853601 2776..3306 2625 99.6 Plus
chrX 22417052 chrX 15737700..15737845 3719..3574 730 100 Minus
chrX 22417052 chrX 15738727..15738857 3523..3393 655 100 Minus
chrX 22417052 chrX 15738977..15739063 3392..3306 435 100 Minus
chrX 22417052 chrX 15738139..15738188 3573..3524 250 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:16:23 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:20:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11850476..11852604 20..2147 10595 100 Plus
3L 28110227 3L 11854246..11854879 2145..2778 3170 100 Plus
3L 28110227 3L 11862284..11862814 2776..3306 2655 100 Plus
X 23542271 X 15847858..15848004 3720..3574 735 100 Minus
X 23542271 X 15848886..15849016 3523..3393 655 100 Minus
X 23542271 X 15849136..15849222 3392..3306 435 100 Minus
X 23542271 X 15848298..15848347 3573..3524 250 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:09:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 11843576..11845704 20..2147 10605 99.9 Plus
3L 28103327 3L 11847346..11847979 2145..2778 3170 100 Plus
3L 28103327 3L 11855384..11855914 2776..3306 2655 100 Plus
X 23527363 X 15855956..15856102 3720..3574 735 100 Minus
X 23527363 X 15856984..15857114 3523..3393 655 100 Minus
X 23527363 X 15857234..15857320 3392..3306 435 100 Minus
X 23527363 X 15856396..15856445 3573..3524 250 100 Minus
Blast to na_te.dros performed on 2019-03-16 04:20:06 has no hits.

IP12648.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:21:06 Download gff for IP12648.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 11841288..11843406 29..2146 99 <- Plus
chr3L 11845032..11845660 2147..2775 99 <- Plus
chr3L 11853071..11853601 2776..3306 99 == Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:46:37 Download gff for IP12648.complete
Subject Subject Range Query Range Percent Splice Strand
sun-RB 1..174 3364..3537 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:26:35 Download gff for IP12648.complete
Subject Subject Range Query Range Percent Splice Strand
sun-RB 1..174 3364..3537 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:25:24 Download gff for IP12648.complete
Subject Subject Range Query Range Percent Splice Strand
sun-RB 1..174 3364..3537 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:46:40 Download gff for IP12648.complete
Subject Subject Range Query Range Percent Splice Strand
sun-RB 1..174 3364..3537 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:35:14 Download gff for IP12648.complete
Subject Subject Range Query Range Percent Splice Strand
sun-RB 1..174 3364..3537 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:46:36 Download gff for IP12648.complete
Subject Subject Range Query Range Percent Splice Strand
CG34420-RC 628..3752 188..3311 99   Minus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:26:34 Download gff for IP12648.complete
Subject Subject Range Query Range Percent Splice Strand
CG34420-RC 628..3752 188..3311 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:25:24 Download gff for IP12648.complete
Subject Subject Range Query Range Percent Splice Strand
CG44837-RC 628..3746 194..3311 99   Minus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:46:40 Download gff for IP12648.complete
Subject Subject Range Query Range Percent Splice Strand
CG34420-RC 628..3752 188..3311 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:35:14 Download gff for IP12648.complete
Subject Subject Range Query Range Percent Splice Strand
CG44837-RC 628..3746 194..3311 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:21:06 Download gff for IP12648.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11850485..11852603 29..2146 99 <- Plus
3L 11854248..11854876 2147..2775 100 <- Plus
3L 11862284..11862814 2776..3306 100 == Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:21:06 Download gff for IP12648.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11850485..11852603 29..2146 99 <- Plus
3L 11854248..11854876 2147..2775 100 <- Plus
3L 11862284..11862814 2776..3306 100 == Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:21:06 Download gff for IP12648.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11850485..11852603 29..2146 99 <- Plus
3L 11854248..11854876 2147..2775 100 <- Plus
3L 11862284..11862814 2776..3306 100 == Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:24 Download gff for IP12648.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11843585..11845703 29..2146 99 <- Plus
arm_3L 11847348..11847976 2147..2775 100 <- Plus
arm_3L 11855384..11855914 2776..3306 100 == Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:53:23 Download gff for IP12648.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11843585..11845703 29..2146 99 <- Plus
3L 11847348..11847976 2147..2775 100 <- Plus
3L 11855384..11855914 2776..3306 100 == Plus

IP12648.hyp Sequence

Translation from 2416 to 2781

> IP12648.hyp
MASRQMALTRVMATSQDPLLPFCPPSGPAFAFLDAFPFALPVAPAPVVEP
SDVGDLASRPTISPPTTTPPARGLPKFTFDFWMLAISPPESLFEIEFWRD
SVRRMFECSVTSGNPPKPVVW*
Sequence IP12648.hyp has no blast hits.

IP12648.pep Sequence

Translation from 3363 to 3536

> IP12648.pep
MTAWRAAGITYIQYSNIAARILRESLKTGLRADAAKRDASHVKFTPWANG
KPAHERA*

IP12648.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 10:54:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17416-PA 82 GF17416-PA 1..53 1..53 248 86.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 10:54:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19366-PA 61 GG19366-PA 1..56 1..56 277 94.6 Plus
Dere\GG17423-PA 64 GG17423-PA 1..53 1..53 208 67.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 10:54:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12534-PA 56 GH12534-PA 3..56 2..55 230 79.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:23:19
Subject Length Description Subject Range Query Range Score Percent Strand
sun-PB 57 CG9032-PB 1..57 1..57 296 100 Plus
sun-PA 61 CG9032-PA 1..56 1..56 275 94.6 Plus
ATPsynepsilonL-PC 64 CG31477-PC 1..52 1..52 215 76.9 Plus
ATPsynepsilonL-PB 64 CG31477-PB 1..52 1..52 215 76.9 Plus
ATPsynepsilonL-PA 64 CG31477-PA 1..52 1..52 215 76.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 10:54:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11196-PA 56 GI11196-PA 3..56 2..55 219 74.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 10:54:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18058-PA 62 GL18058-PA 4..58 3..57 239 81.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 10:54:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21492-PA 62 GA21492-PA 4..58 3..57 239 81.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 10:54:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22520-PA 61 GM22520-PA 1..56 1..56 277 94.6 Plus
Dsec\GM23863-PA 64 GM23863-PA 1..53 1..53 212 73.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 10:54:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24676-PA 61 GD24676-PA 1..56 1..56 277 94.6 Plus
Dsim\GD18671-PA 64 GD18671-PA 1..53 1..53 212 73.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 10:54:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18479-PA 56 GJ18479-PA 4..56 3..55 236 84.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 10:54:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19782-PA 62 GK19782-PA 3..54 2..53 237 84.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 10:54:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16014-PA 61 GE16014-PA 1..56 1..56 277 94.6 Plus
Dyak\GE26014-PA 64 GE26014-PA 1..53 1..53 208 67.9 Plus