Clone IP12872 Report

Search the DGRC for IP12872

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:128
Well:72
Vector:pOT2
Associated Gene/TranscriptCG14221-RB
Protein status:IP12872.pep: gold
Preliminary Size:1821
Sequenced Size:1959

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14221 2005-01-01 Successful iPCR screen
CG14221 2008-04-29 Release 5.5 accounting
CG14221 2008-08-15 Release 5.9 accounting
CG14221 2008-12-18 5.12 accounting

Clone Sequence Records

IP12872.complete Sequence

1959 bp (1959 high quality bases) assembled on 2005-03-28

GenBank Submission: BT022879

> IP12872.complete
AAGAAGGGAGGAGTCCAGCAGCTTCAGGCCGACCTCGCCTCGGATGAGGA
GTTCGAGAAGTTCCTGCAGCGATCCGGATTGCTGGGTACGTTCTCGATGC
GATGGTTAGCCATTAGTCCACCCAGTAATCTCGCTCTAATCCCTGAGTGC
TTCAGTGCTCGATATATACTCCGAATGGTGCGGTCCCTGCCTCGGCATGG
TGGGTAGCCTGCGGAAGATCAAGCTCGAGCTAGGAGGCGACAACCTGCAG
TTGGCCATCTGCAAGGCGGGCTCCATATCCTATCTGAAGCGATTCAACAA
GAAGAGCGAGCCCACGTGGATGTTTGTCACGAGCGGCAAGGCCATCAATA
TCATGTTCGGCACGGATGTGCCCAAGCTGGTGGCCATGATCACCCGAATG
CTGCAGTCGACGATGGCCAAGGAAACGCACCTGAGCTACGAGATCACCGA
GCTCCAGCCGATCGAGCTGGAGCAGCTGGAGGTGCGCAACAAGGCGCTGC
GCCTGGCCGAGGAGATCGAGCTGGCGGAGAGCCGTCGGAAGCGGCTGGAG
TACCTTCACAGCGTCACCGACTGCATCATGGCCAACCTGCCGGACATCGG
GATCACGGTCTTCGGGCCACAGGTTAATCGCGACATGTTCAAGAAACTCT
CGGAGCCGGCTGATCCGCTCAAGATTCAGTGCAAGGACCGCAAGGTATTT
ACCATTCTGCCTAGCGACATCGCCACCGTCAACTTTGCTGCGGAGAATCC
ACTGTCACCGGAGGTTATCGAGCAGCTCTACGACAAGGAGCTGCTGATGT
GCTTCTGGAAGGTGGACGAGGTGCTCGGCACGCCACCGACCGTGCTCCGC
CAATATGCCCACGAGCTGACCAAGGAGACCATTAAGCCGCCGGACGAGTT
CAACGAGGAGGAGATCACCGTGCCGCCCATGATTGTGCCGCTGGAGGTGA
CCGTGGAGATATCTGATCCAGAGCCATCAACGGAGAATAGTCAGGTGCAG
CCGGACGCAGTGCATCTGGCCGAGATTAGGAGCGAAAATGTAGCGGAGGC
TGAGGAAGAGACGGAGACAGAGGCGGAGGCAGGTGCGGCACCAGAGGCCA
AAACTGCTCCGGTTGCAGCTAAGAGAACCAAGACTATTCGGATACCGCCG
ATTTGGGTGCCCAGTGACCAGCGCACCCATGCAGCGCTAATCTACACGTA
CTTCCGTGCCCAGACCACGACCTTCCTTCCGCCGGATCCCGTGCCGGAGC
CACCGCACATCGTGATGATCTTCGACGCCTACAAGAAGAAGGATCTCGCT
ATTCTGCTCGAGACGTGTCGCGAGGACATTCCGCTCTATGGCTTCTTTAA
CGGTGACAATCCGCTGACGGCGCAATTTATAGCAAACTCCGTGGAGAAGT
ACAATGCCAAGCCGTATGTTCCTACCGACAAGATTGTACTGAAGGTGAAC
AAGGTGAACAGTCCGACCATTCCCACGCTGATGGCCTACGGTCCCAGCTA
CGTTAGCGCCAACTCGGTGGTGGGCCACCAGGAGGCCACACAGTTCTTTC
CCGCCAACTACAAGTCTGCGCTGCAGGAGGAGGAGGAACTGCACGCCGTC
AAGACGGAGAAGCCCAAGAAGCGCAAGAAGAATAAAAAGGGCGGCGATCC
CGAGGAGAGCGGCAAGGCGGACGCCGGACCGGCGGATGCGCAGATGGAGG
CGGAAGAAGCGGTGAAGACCTCGCCGGAGGAAGGCGCCTCCACCACGAGC
AGTGGCGAGGACAGCTGCGAGAGTCGTCCTGCCACAGCGGATGGCGCCAA
TCCCGACGCTTCGCAGGCCACATAGATGCCCTAGTTCCATTCAAAAGTAC
TGCTCCATTCCGAAATATTATGATTATAATACTATAATATTAAATTACCC
TTGACGGCAATCTTTTAAAAATTATACAGCAAATTAAAAAAAAAAAAAAA
AAAAAAAAA

IP12872.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:39:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG14221-RB 1943 CG14221-RB 7..1943 1..1937 9685 100 Plus
CG14221.a 2167 CG14221.a 231..2167 1..1937 9685 100 Plus
CG18130-RB 1985 CG18130-RB 426..501 744..819 170 81.5 Plus
CG18130-RB 1985 CG18130-RB 220..373 538..691 140 72.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:37:27
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 19508786..19509426 971..331 3190 99.8 Minus
chrX 22417052 chrX 19508267..19508719 1422..970 2160 98.5 Minus
chrX 22417052 chrX 19507611..19507917 1935..1629 1535 100 Minus
chrX 22417052 chrX 19509646..19509904 259..1 1295 100 Minus
chrX 22417052 chrX 19507976..19508183 1630..1423 1025 99.5 Minus
chrX 22417052 chrX 19509504..19509575 331..260 360 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:17:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:37:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19619994..19620634 971..331 3205 100 Minus
X 23542271 X 19619475..19619927 1422..970 2265 100 Minus
X 23542271 X 19618817..19619125 1937..1629 1545 100 Minus
X 23542271 X 19620854..19621112 259..1 1295 100 Minus
X 23542271 X 19619184..19619391 1630..1423 1040 100 Minus
X 23542271 X 19620712..19620783 331..260 360 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:29:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 19628092..19628732 971..331 3205 100 Minus
X 23527363 X 19627573..19628025 1422..970 2265 100 Minus
X 23527363 X 19626915..19627223 1937..1629 1545 100 Minus
X 23527363 X 19628952..19629210 259..1 1295 100 Minus
X 23527363 X 19627282..19627489 1630..1423 1040 100 Minus
X 23527363 X 19628810..19628881 331..260 360 100 Minus
X 23527363 X 11999837..11999912 819..744 170 81.5 Minus
X 23527363 X 11999965..12000118 691..538 140 72.7 Minus
Blast to na_te.dros performed on 2019-03-16 14:37:25 has no hits.

IP12872.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:38:34 Download gff for IP12872.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 19507976..19508183 1423..1630 99 <- Minus
chrX 19508267..19508717 972..1422 98 <- Minus
chrX 19508786..19509425 332..971 99 <- Minus
chrX 19509504..19509575 260..331 100 <- Minus
chrX 19509646..19509904 1..259 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:53:42 Download gff for IP12872.complete
Subject Subject Range Query Range Percent Splice Strand
CG14221-RB 1..1629 197..1825 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:05:48 Download gff for IP12872.complete
Subject Subject Range Query Range Percent Splice Strand
CG14221-RB 1..1629 197..1825 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 15:26:40 Download gff for IP12872.complete
Subject Subject Range Query Range Percent Splice Strand
CG14221-RC 7..90 1..84 100 == Plus
CG14221-RC 91..1761 155..1825 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:50:52 Download gff for IP12872.complete
Subject Subject Range Query Range Percent Splice Strand
CG14221-RB 1..1629 197..1825 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:29:34 Download gff for IP12872.complete
Subject Subject Range Query Range Percent Splice Strand
CG14221-RC 7..90 1..84 100 == Plus
CG14221-RC 91..1761 155..1825 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:54:10 Download gff for IP12872.complete
Subject Subject Range Query Range Percent Splice Strand
CG14221-RB 7..1941 1..1935 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:05:48 Download gff for IP12872.complete
Subject Subject Range Query Range Percent Splice Strand
CG14221-RB 7..1941 1..1935 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:26:40 Download gff for IP12872.complete
Subject Subject Range Query Range Percent Splice Strand
CG14221-RB 7..1941 1..1935 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:50:52 Download gff for IP12872.complete
Subject Subject Range Query Range Percent Splice Strand
CG14221-RB 7..1941 1..1935 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:29:34 Download gff for IP12872.complete
Subject Subject Range Query Range Percent Splice Strand
CG14221-RB 7..1941 1..1935 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:38:34 Download gff for IP12872.complete
Subject Subject Range Query Range Percent Splice Strand
X 19618819..19619123 1631..1935 100 <- Minus
X 19619184..19619391 1423..1630 100 <- Minus
X 19619475..19619925 972..1422 100 <- Minus
X 19619994..19620633 332..971 100 <- Minus
X 19620712..19620783 260..331 100 <- Minus
X 19620854..19621112 1..259 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:38:34 Download gff for IP12872.complete
Subject Subject Range Query Range Percent Splice Strand
X 19618819..19619123 1631..1935 100 <- Minus
X 19619184..19619391 1423..1630 100 <- Minus
X 19619475..19619925 972..1422 100 <- Minus
X 19619994..19620633 332..971 100 <- Minus
X 19620712..19620783 260..331 100 <- Minus
X 19620854..19621112 1..259 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:38:34 Download gff for IP12872.complete
Subject Subject Range Query Range Percent Splice Strand
X 19618819..19619123 1631..1935 100 <- Minus
X 19619184..19619391 1423..1630 100 <- Minus
X 19619475..19619925 972..1422 100 <- Minus
X 19619994..19620633 332..971 100 <- Minus
X 19620712..19620783 260..331 100 <- Minus
X 19620854..19621112 1..259 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:26:40 Download gff for IP12872.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19513217..19513424 1423..1630 100 <- Minus
arm_X 19512852..19513156 1631..1935 100 <- Minus
arm_X 19513508..19513958 972..1422 100 <- Minus
arm_X 19514027..19514666 332..971 100 <- Minus
arm_X 19514745..19514816 260..331 100 <- Minus
arm_X 19514887..19515145 1..259 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:25:38 Download gff for IP12872.complete
Subject Subject Range Query Range Percent Splice Strand
X 19628952..19629210 1..259 100   Minus
X 19626917..19627221 1631..1935 100 <- Minus
X 19627282..19627489 1423..1630 100 <- Minus
X 19627573..19628023 972..1422 100 <- Minus
X 19628092..19628731 332..971 100 <- Minus
X 19628810..19628881 260..331 100 <- Minus

IP12872.pep Sequence

Translation from 196 to 1824

> IP12872.pep
MVGSLRKIKLELGGDNLQLAICKAGSISYLKRFNKKSEPTWMFVTSGKAI
NIMFGTDVPKLVAMITRMLQSTMAKETHLSYEITELQPIELEQLEVRNKA
LRLAEEIELAESRRKRLEYLHSVTDCIMANLPDIGITVFGPQVNRDMFKK
LSEPADPLKIQCKDRKVFTILPSDIATVNFAAENPLSPEVIEQLYDKELL
MCFWKVDEVLGTPPTVLRQYAHELTKETIKPPDEFNEEEITVPPMIVPLE
VTVEISDPEPSTENSQVQPDAVHLAEIRSENVAEAEEETETEAEAGAAPE
AKTAPVAAKRTKTIRIPPIWVPSDQRTHAALIYTYFRAQTTTFLPPDPVP
EPPHIVMIFDAYKKKDLAILLETCREDIPLYGFFNGDNPLTAQFIANSVE
KYNAKPYVPTDKIVLKVNKVNSPTIPTLMAYGPSYVSANSVVGHQEATQF
FPANYKSALQEEEELHAVKTEKPKKRKKNKKGGDPEESGKADAGPADAQM
EAEEAVKTSPEEGASTTSSGEDSCESRPATADGANPDASQAT*

IP12872.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 15:33:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20278-PA 589 GF20278-PA 45..589 1..542 2200 80.8 Plus
Dana\GF19302-PA 683 GF19302-PA 405..555 310..462 451 58.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 15:33:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18042-PA 582 GG18042-PA 45..582 1..542 2521 93.4 Plus
Dere\GG19570-PA 700 GG19570-PA 45..345 1..297 815 51.5 Plus
Dere\GG19570-PA 700 GG19570-PA 408..555 310..457 448 58.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 15:33:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12569-PA 563 GH12569-PA 45..555 1..535 1933 71.8 Plus
Dgri\GH11822-PA 667 GH11822-PA 45..299 1..255 756 53.3 Plus
Dgri\GH11822-PA 667 GH11822-PA 400..547 310..457 364 52.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:08:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG14221-PC 586 CG14221-PC 45..586 1..542 2788 100 Plus
CG14221-PB 542 CG14221-PB 1..542 1..542 2788 100 Plus
CG18130-PA 706 CG18130-PA 45..625 1..541 1267 44.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 15:33:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16349-PA 554 GI16349-PA 45..546 1..535 1885 73.1 Plus
Dmoj\GI14764-PA 694 GI14764-PA 45..278 1..234 732 55.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 15:33:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27104-PA 645 GL27104-PA 137..596 3..468 1821 77.7 Plus
Dper\GL15842-PA 467 GL15842-PA 45..296 1..251 854 62.7 Plus
Dper\GL15842-PA 467 GL15842-PA 401..458 310..367 172 58.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 15:33:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12835-PA 585 GA12835-PA 45..580 1..542 2060 78.5 Plus
Dpse\GA23461-PA 776 GA23461-PA 45..548 1..456 1202 49.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 15:33:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22726-PA 577 GM22726-PA 45..577 1..542 2709 94.5 Plus
Dsec\GM13231-PA 700 GM13231-PA 45..307 1..262 809 56.3 Plus
Dsec\GM13231-PA 700 GM13231-PA 408..554 310..456 431 56.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 15:33:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24456-PA 590 GD24456-PA 45..590 1..542 2784 96.2 Plus
Dsim\GD15949-PA 697 GD15949-PA 45..307 1..262 810 56.3 Plus
Dsim\GD15949-PA 697 GD15949-PA 408..554 310..456 432 56.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 15:33:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15687-PA 505 GJ15687-PA 45..480 1..468 1761 72.2 Plus
Dvir\GJ18734-PA 685 GJ18734-PA 45..278 1..234 764 56.8 Plus
Dvir\GJ18734-PA 685 GJ18734-PA 403..647 310..533 388 39.6 Plus
Dvir\GJ15688-PA 68 GJ15688-PA 2..63 478..538 151 61.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 15:33:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25405-PA 587 GK25405-PA 45..585 1..538 1825 70.5 Plus
Dwil\GK24910-PA 588 GK24910-PA 45..586 1..538 1825 70.5 Plus
Dwil\GK24984-PA 748 GK24984-PA 45..300 1..255 839 59.9 Plus
Dwil\GK24984-PA 748 GK24984-PA 407..638 310..533 476 43.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 15:33:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17371-PA 587 GE17371-PA 45..585 1..539 2461 91.9 Plus
Dyak\GE16730-PA 695 GE16730-PA 408..554 310..456 447 57.1 Plus

IP12872.hyp Sequence

Translation from 196 to 1824

> IP12872.hyp
MVGSLRKIKLELGGDNLQLAICKAGSISYLKRFNKKSEPTWMFVTSGKAI
NIMFGTDVPKLVAMITRMLQSTMAKETHLSYEITELQPIELEQLEVRNKA
LRLAEEIELAESRRKRLEYLHSVTDCIMANLPDIGITVFGPQVNRDMFKK
LSEPADPLKIQCKDRKVFTILPSDIATVNFAAENPLSPEVIEQLYDKELL
MCFWKVDEVLGTPPTVLRQYAHELTKETIKPPDEFNEEEITVPPMIVPLE
VTVEISDPEPSTENSQVQPDAVHLAEIRSENVAEAEEETETEAEAGAAPE
AKTAPVAAKRTKTIRIPPIWVPSDQRTHAALIYTYFRAQTTTFLPPDPVP
EPPHIVMIFDAYKKKDLAILLETCREDIPLYGFFNGDNPLTAQFIANSVE
KYNAKPYVPTDKIVLKVNKVNSPTIPTLMAYGPSYVSANSVVGHQEATQF
FPANYKSALQEEEELHAVKTEKPKKRKKNKKGGDPEESGKADAGPADAQM
EAEEAVKTSPEEGASTTSSGEDSCESRPATADGANPDASQAT*

IP12872.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:51:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG14221-PC 586 CG14221-PC 45..586 1..542 2788 100 Plus
CG14221-PB 542 CG14221-PB 1..542 1..542 2788 100 Plus
CG18130-PA 706 CG18130-PA 45..625 1..541 1267 44.7 Plus