Clone IP12874 Report

Search the DGRC for IP12874

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:128
Well:74
Vector:pOT2
Associated Gene/TranscriptCG14257-RB
Protein status:IP12874.pep: gold
Preliminary Size:1791
Sequenced Size:2632

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14257 2005-01-01 Successful iPCR screen
CG14257 2008-04-29 Release 5.5 accounting
CG14257 2008-08-15 Release 5.9 accounting
CG14257 2008-12-18 5.12 accounting

Clone Sequence Records

IP12874.complete Sequence

2632 bp (2632 high quality bases) assembled on 2006-09-22

GenBank Submission: BT029093

> IP12874.complete
CAGACGTTGCCGAGATATAGCCGCAGCTACAAAATCCCCAGATCGGGAGA
CTCGAATCGGTGAAAGAAAGTGGAGAGTGAAATTTTTTGTGCGCGCTGCA
AACCGCTGAGACGAATGCCGATGACAAAACAAACGTGAAGCGAAACGGTT
CGAAATCGAAGTCGAAAAAGTGCGGCGGCCAAAAGTGCCAATTGCAAGTG
GCCGAGTGAAGAAAGTTGGTGTGAAGAGGAGACAGCGTTAAAAAAAATTA
AAATAAATAAAAAACAACCCGAGGACGTCATCGGTAAAAGTGAATTTTGA
TCTCGATTTGCCACCCAGCTAATCGAAGGCCCAATTTGAGCTAAGCCCAC
GAAAAACACAGGCGCACGAAATGAAGGTCTTCAGCCTAAGTCTTTTGCTG
GTGGCCGCCCTCCCTCTGATGTGCCACGCCCTTCCAGCTAGCGATAAGTC
CCTTTCCCTGGAAGACACAGATCTGGACAACGAACCGGGCGAGAGTGTAA
AGGAGTCCCAGGTGCAAAAGCGGTCCGGCAGCTTCGACTACGTGGCGCAC
CTGAAGTCCGGCCTGCTGTCGGGAATTGGCCAGGCCTCCGCCTCAATCGC
CTCCGGCAGTTCCGGCGGAAGCAGCGGTGGCGGTGACAGCTACAAATCCC
ACGAGATCGTTGTCCATGGCAACTCTGTGGACTACGATCCCTGGTCTTTT
AAGAAATCCGTGCTGAACACTATCTTCCAGGCGGTCAAGGCCATCACCGG
CGGAGTCACCGCACTCAAGGGTCAGCTGATCAAGGGCAGCGGCTACGCGC
TGAGTGCGGGTGGCAATCTGGTGGCCGCCGGCGGCGACAAGGTCACCGAT
GTGGGCAAGTCCATCATCAACTCGGCGCACATCAACTCGCACACCTACGC
CACTAGTCACTCCTCCTCCGGCGGCGGTCTGTTCGCCAAGCTGACCTCCT
TGTCGGGCGCCTCCTCCGGCGGCAGCAGTGGGCACAAGACCGTCTCCGCA
CCTGGACCCGTTGTGCATCACGAGACGATCACCACGTACGAGATACCCAC
TGGCCACGCCAGCTACGGTCCGCCATCGAAGCCCCCGACCTACAGCAGCG
CCACCCATCAGTACCTTCCGCCGGTGGGCGGGGCTAGCTACGGCGGCGGG
GCGCCCTTCAGCGTTAGCCACCCGGCGGCCTTCGAGTCGCCGCCAAGCAA
CTATCTGCCATCGGCCTATGGACAAGATGCGACCAGCGCAAATAGCAATG
ACTTTAACATCTATGGCCGCCACTCAAAGCTAACGGATGAGGAAGCCCGC
AAGGCGGCGGCACAGCTCCAGGAGATCCTCAGCTTGTTGCCCAACGGGAA
AACTGAGTACACGGCCTCCAAGACAGTGGCTTTGGATACCAGTTTGCCAA
CGGGTACGGGTTTGGAACAGGCAGAGGTTTATAACAGCTATGGCATACCG
CTGCCCAGTAACCTGGGCACCTTGGAGTCCCTGTCGCACACAGAGTCCAT
AACAGCTGCCTATAATCCCGCCTCAAAGAATCCGGCGGATGTATACCACC
AGATGGCCAAGCGCCCGTCCGCCGAGGAACTCTACATCCAGAAGCATCCC
AATGAGGGCTACGATTACTCGCCACCCGCAGCTGCGGCCCCGCCACCGCA
AGCTGCTGCAGATTACAGAGTGGAGAACTACCACGCCACCAAGAGCAATG
CGCTCAAGGATCTGACGCCCATTATAGCCGCCTTGGAGGTGGCCAAGCGG
AAGGGTAACAACCACGGCAGCGGACCCGTCTACTCCATCGAGAAGCAGGT
GCACAAGCAGTCGCCCCACTTCCAGTATCTGCCGCCGGTGGTGCAAAAGT
CCAAGTACGTGTACAGTGCACCACCGCACCACCACCAAGGACACAGCGGT
GGCTACAAGGTGCGACGCCAGGTGGCGGGCGGCAAGCACACGAAGCGCGT
CTTCCGGCCGCAGGATTACGAGATACAGGATCCACTGATGTTCAACCGCC
TGCTGGAGGTCTAATGGGATCGCCCGCAGTTCTTAGCTTATAGTCCTCTA
AGTCATGTGCAGCATTTACCTAAATCTATAACTTATTTATGTTCTCGTTA
TCGCAATGCTAATCGCAATGCTAATCGTAATTAATTATTTATTGAGCTTC
CCAGCGATGGTTGGCAATAAAGCGCGCCATTGATATTGCATCCGAATGTC
TCAGCACAGCATGCTTCAAAAGATCCCCAGCACCACCAATCAGTCACCCA
CTCTCTCTCTCTCTCTCTCTTTTCCCGCACACCCACTTTCCTGCGCTGCT
GCACCACCACACACATTGAATCGGGAACCCTTTTCTCACCTCTCACCGAT
CTCTTTGCAGTCTACCATCAGTAGAGGACGATAAGGAAGCTGTGGACCAC
GCCCAGTTCGTTAACAGCACCGTCCATCTCCACGTATCCTAGAGTTAGTC
AAACCGTTCCTGCCTATTCCGAATCTATCTGCTGTCACTCCCCCCATTCT
ATATACATTTCCGAATTCGAAGAACCTCTTTAAGGGCCACCCAGAAACTT
CAGTTGGCATTAATTGAACTTCCCCATCTTACGTTTAAGTATTTAAATTA
AATAAATCGTTGATTAAAAAAAAAAAAAAAAA

IP12874.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:15:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG14257-RB 2687 CG14257-RB 69..2686 1..2618 13090 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:25:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 22904468..22905841 1229..2615 6505 98.4 Plus
chr3R 27901430 chr3R 22898929..22899307 1..378 1815 99.2 Plus
chr3R 27901430 chr3R 22902074..22902436 663..1025 1800 99.7 Plus
chr3R 27901430 chr3R 22901695..22901988 375..668 1410 98.6 Plus
chr3R 27901430 chr3R 22902915..22903118 1026..1229 1020 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:17:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:25:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27081432..27082821 1229..2618 6950 100 Plus
3R 32079331 3R 27075883..27076260 1..378 1890 100 Plus
3R 32079331 3R 27079039..27079401 663..1025 1800 99.7 Plus
3R 32079331 3R 27078660..27078953 375..668 1470 100 Plus
3R 32079331 3R 27079879..27080082 1026..1229 1020 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:08:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 26822263..26823652 1229..2618 6950 100 Plus
3R 31820162 3R 26816714..26817091 1..378 1890 100 Plus
3R 31820162 3R 26819870..26820232 663..1025 1800 99.7 Plus
3R 31820162 3R 26819491..26819784 375..668 1470 100 Plus
3R 31820162 3R 26820710..26820913 1026..1229 1020 100 Plus
Blast to na_te.dros performed on 2019-03-16 16:25:47 has no hits.

IP12874.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:26:48 Download gff for IP12874.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 22898929..22899305 1..376 99 -> Plus
chr3R 22901697..22901987 377..667 98 -> Plus
chr3R 22902079..22902436 668..1025 100 -> Plus
chr3R 22902915..22903118 1026..1229 100 -> Plus
chr3R 22904469..22905354 1230..2115 99 == Plus
chr3R 22905478..22905841 2253..2615 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:53:43 Download gff for IP12874.complete
Subject Subject Range Query Range Percent Splice Strand
CG14257-RB 1..1644 371..2014 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:25:28 Download gff for IP12874.complete
Subject Subject Range Query Range Percent Splice Strand
CG14257-RB 1..1644 371..2014 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:10:33 Download gff for IP12874.complete
Subject Subject Range Query Range Percent Splice Strand
CG14257-RB 1..1644 371..2014 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:44:56 Download gff for IP12874.complete
Subject Subject Range Query Range Percent Splice Strand
CG14257-RB 1..1644 371..2014 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:27:25 Download gff for IP12874.complete
Subject Subject Range Query Range Percent Splice Strand
CG14257-RB 1..1644 371..2014 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:53:28 Download gff for IP12874.complete
Subject Subject Range Query Range Percent Splice Strand
CG14257-RB 1..2615 1..2615 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:25:28 Download gff for IP12874.complete
Subject Subject Range Query Range Percent Splice Strand
CG14257-RB 1..2615 1..2615 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:10:33 Download gff for IP12874.complete
Subject Subject Range Query Range Percent Splice Strand
CG14257-RB 14..2628 1..2615 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:44:56 Download gff for IP12874.complete
Subject Subject Range Query Range Percent Splice Strand
CG14257-RB 1..2615 1..2615 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:27:25 Download gff for IP12874.complete
Subject Subject Range Query Range Percent Splice Strand
CG14257-RB 14..2628 1..2615 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:26:48 Download gff for IP12874.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27081433..27082818 1230..2615 100   Plus
3R 27075883..27076258 1..376 100 -> Plus
3R 27078662..27078952 377..667 100 -> Plus
3R 27079044..27079401 668..1025 100 -> Plus
3R 27079879..27080082 1026..1229 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:26:48 Download gff for IP12874.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27081433..27082818 1230..2615 100   Plus
3R 27075883..27076258 1..376 100 -> Plus
3R 27078662..27078952 377..667 100 -> Plus
3R 27079044..27079401 668..1025 100 -> Plus
3R 27079879..27080082 1026..1229 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:26:48 Download gff for IP12874.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27081433..27082818 1230..2615 100   Plus
3R 27075883..27076258 1..376 100 -> Plus
3R 27078662..27078952 377..667 100 -> Plus
3R 27079044..27079401 668..1025 100 -> Plus
3R 27079879..27080082 1026..1229 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:10:33 Download gff for IP12874.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22901605..22901980 1..376 100 -> Plus
arm_3R 22904384..22904674 377..667 100 -> Plus
arm_3R 22904766..22905123 668..1025 100 -> Plus
arm_3R 22905601..22905804 1026..1229 100 -> Plus
arm_3R 22907155..22908540 1230..2615 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:52:38 Download gff for IP12874.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26816714..26817089 1..376 100 -> Plus
3R 26819493..26819783 377..667 100 -> Plus
3R 26819875..26820232 668..1025 100 -> Plus
3R 26820710..26820913 1026..1229 100 -> Plus
3R 26822264..26823649 1230..2615 100   Plus

IP12874.pep Sequence

Translation from 370 to 2013

> IP12874.pep
MKVFSLSLLLVAALPLMCHALPASDKSLSLEDTDLDNEPGESVKESQVQK
RSGSFDYVAHLKSGLLSGIGQASASIASGSSGGSSGGGDSYKSHEIVVHG
NSVDYDPWSFKKSVLNTIFQAVKAITGGVTALKGQLIKGSGYALSAGGNL
VAAGGDKVTDVGKSIINSAHINSHTYATSHSSSGGGLFAKLTSLSGASSG
GSSGHKTVSAPGPVVHHETITTYEIPTGHASYGPPSKPPTYSSATHQYLP
PVGGASYGGGAPFSVSHPAAFESPPSNYLPSAYGQDATSANSNDFNIYGR
HSKLTDEEARKAAAQLQEILSLLPNGKTEYTASKTVALDTSLPTGTGLEQ
AEVYNSYGIPLPSNLGTLESLSHTESITAAYNPASKNPADVYHQMAKRPS
AEELYIQKHPNEGYDYSPPAAAAPPPQAAADYRVENYHATKSNALKDLTP
IIAALEVAKRKGNNHGSGPVYSIEKQVHKQSPHFQYLPPVVQKSKYVYSA
PPHHHQGHSGGYKVRRQVAGGKHTKRVFRPQDYEIQDPLMFNRLLEV*

IP12874.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 12:28:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23273-PA 555 GF23273-PA 1..555 1..547 2125 86.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 12:28:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11523-PA 595 GG11523-PA 25..595 5..547 2386 91.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 12:28:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18632-PA 589 GH18632-PA 133..589 100..547 1554 74.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:23:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG14257-PB 547 CG14257-PB 1..547 1..547 2844 100 Plus
CG14257-PC 290 CG14257-PC 1..286 1..286 1473 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 12:28:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24304-PA 571 GI24304-PA 15..571 17..547 1765 73.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 12:28:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23898-PA 555 GL23898-PA 1..555 1..547 1954 81.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 12:28:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12862-PA 555 GA12862-PA 1..555 1..547 2005 82.1 Plus
Dpse\GA27097-PB 290 GA27097-PB 1..290 1..286 950 84.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 12:28:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10363-PA 565 GM10363-PA 25..565 6..547 2775 98.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 12:28:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21323-PA 288 GD21323-PA 1..286 1..286 1439 99 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 12:28:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23082-PA 589 GJ23082-PA 133..588 100..546 1503 72.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 12:28:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11043-PA 573 GK11043-PA 28..572 13..546 1865 77.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 12:28:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23712-PA 592 GE23712-PA 21..592 6..547 2690 92.3 Plus

IP12874.hyp Sequence

Translation from 370 to 2013

> IP12874.hyp
MKVFSLSLLLVAALPLMCHALPASDKSLSLEDTDLDNEPGESVKESQVQK
RSGSFDYVAHLKSGLLSGIGQASASIASGSSGGSSGGGDSYKSHEIVVHG
NSVDYDPWSFKKSVLNTIFQAVKAITGGVTALKGQLIKGSGYALSAGGNL
VAAGGDKVTDVGKSIINSAHINSHTYATSHSSSGGGLFAKLTSLSGASSG
GSSGHKTVSAPGPVVHHETITTYEIPTGHASYGPPSKPPTYSSATHQYLP
PVGGASYGGGAPFSVSHPAAFESPPSNYLPSAYGQDATSANSNDFNIYGR
HSKLTDEEARKAAAQLQEILSLLPNGKTEYTASKTVALDTSLPTGTGLEQ
AEVYNSYGIPLPSNLGTLESLSHTESITAAYNPASKNPADVYHQMAKRPS
AEELYIQKHPNEGYDYSPPAAAAPPPQAAADYRVENYHATKSNALKDLTP
IIAALEVAKRKGNNHGSGPVYSIEKQVHKQSPHFQYLPPVVQKSKYVYSA
PPHHHQGHSGGYKVRRQVAGGKHTKRVFRPQDYEIQDPLMFNRLLEV*

IP12874.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:51:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG14257-PB 547 CG14257-PB 1..547 1..547 2844 100 Plus
CG14257-PC 290 CG14257-PC 1..286 1..286 1473 100 Plus