Clone IP12904 Report

Search the DGRC for IP12904

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:129
Well:4
Vector:pOT2
Associated Gene/Transcriptprt-RB
Protein status:IP12904.pep: gold
Preliminary Size:1677
Sequenced Size:2164

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10251 2005-01-01 Successful iPCR screen
CG10251 2008-04-29 Release 5.5 accounting
CG10251 2008-08-15 Release 5.9 accounting
CG10251 2008-12-18 5.12 accounting

Clone Sequence Records

IP12904.complete Sequence

2164 bp assembled on 2007-04-18

GenBank Submission: BT030447

> IP12904.complete
GCAGCACCACCACCTGTTGCCACTCCGGATAGATACACTCGGGAGCATAC
TTTGTGGCGCGTATCGCGAGCCATATGGCAGCCTAATTTGGCGCTATCAG
TGTGCCGTCCAATTAGCCATGTCGGAGAAATCGAACCGTGCTCAAATACA
CTCCAACTCCCGATCGAAATCCCAAAACCAAGCGGCTGTTCAACTGAATG
CCCCGGGCAGACGCAGCTCCACTCCATCCGGAGCCAATGGCTCCTCCAAT
CGCTGCCTGATTGCCGTGATTGTTTACCTGGCCCTGCTGCTAGATAACAT
GCTGCTAACCGTAATTGTGCCCATCCTGCCGGATTATCTGGCCAGCCTGG
AGGCGGATACATCGTCCGCGGTAGTGCTGAGTCTGGAGGACACATCGTCA
TTCTCGAAACTTGGCTATCGGTCTGGAGAATCGCCAGGCGGCGGTCATCC
TCAACTGTACATTTCTAAGCATCCGATTCCGGGCAAATCAATGGTTAACT
TCACACTGCTCCAGCTGTCCACAGAAGCCACAACCACGACCACCAGCATC
GCCACAACGACCAACTCCCCGCACAATTCTACGTCCATGCAATCGCCTCC
AAAGCTGACGGTTGGCCAGTCGGGCGGCACTAATGTCACTGGAATTGGGC
ACAAGAGCAGGAACAGGAAGCTGGCCTCCGGCCATCCCCCCACCCACGAC
AACAGCAGCAATGACAACAGCAACAAGGAGCTGACCTTGACGCAGGAGAA
TGGCTCCATCGGCCTGTTGCTGGCCATGAAGGCTCTGGTCCAATTAATTT
TCAATCCGATTGTCGGCAATGCGTCCAGCAAGTTTGGTTACCGCCTTCCC
ATTGTGGTCGGCACCTTCTTCCTGCTCCTCTCCTCGCTGGTTTTCACCGT
TGGTGAATCCTACTGGGCTCTCCTGGTGGCCCGGGCTGTGCAGGGCGTGG
GATCCGCTTGCATCAACATATGCGGCATGAGCCTGGTGGCCCAGCATTAT
CCGGAGGAGGCACGTCGTTCCAAGGTGATGGGCATCATCCTGGGCAGCAT
CGCATTGGGTGTGCTGCTGGGCTATCCATTCGGTGGAATTCTGTATGACC
TAATGGGCAAATCGGCGCCTTTTATCATTCTCTCCACTCTGATGTTCCTA
AGTTTGGGCCTCCAGCTCCTGACCATGGATCTGACGGTGCAACCGGAGGT
TGTGGTGGAGGATAGACCCAAGTGGCGATCGCTGCTCGAATGCAAAATGA
TCCTGGCCATTGTGCTGGCCATTTGGTTTTCAACCTCAACAATGGCCATG
CTGGAGCCCTGTCTGCCCATCTGGCTAATCCAGTATCTAAAGCCTAACAA
GTGGCAGCTGGGCACCGTTTTCATTCCAGACTCTGTGGGCTACTTTGTGG
GCACGAACTTCTTCGGCAGCATTGCCTACAAATATGGTCAGGTTAAGGTG
TCCTGTATCAGTTTGTTGCTGGTGGGAGTAGCCTCTATTCTGATACCCAG
TGCTACAACGGTGGCCCAACTATTGCTGCCCCATTTTGCCTTGGGACTGG
GTATTGGAGTAATCGATGCCGCATTGGTTCCACTCTTGGCCACCTTTGTG
GATGCAACACTGGCTCAGGAGGATCAGGGTGAGGGCAGCAGTTCCATGTC
CAGCTACGGAACAGTCTATGCTATCCAGCAGACCTCTGTCAGTCTGGCTT
ATTGCTTAGCTCCCCTGATTGGCGGGGAGTTGGCCCAGACCTTTGGATTT
GCTTGGCTGATGCGCATTGTCGGCATTTTCAATATGATTTATGGCCCAAT
ATTGGTCTACTTGCATCAGAAATACGATCCAAAGGCCCTTAGGGAACAGC
ATAATGATATGCTGCTCCAAAGCAGCGGGCGGGGATCTAGGTATAAACAA
CTTTACAACTCCATGGATGTGGAATAAGCTGTACTGCCCAGTTGTCCAGC
AAAATAGCAAACAACCTTGAGTGTGCAAATAAGGCGTTCCTTTGGCTCAA
TAAAGCAATATATCTGGAGCTGATTTTCGTAAACAATTTATTTTTCCGAT
AAAATTCGAATCTCCTATTATTAAAATCACTTTGCCATGTCTTGAAGTAA
CTTAGGTTATTATGATCAAATTTTCGGAATAAAAAGAATTACGTAATTAA
AAAAAAAAAAAAAA

IP12904.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:05:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG10251-RB 2192 CG10251-RB 45..2192 1..2148 10740 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:05:57
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 19520640..19521242 1492..890 2955 99.3 Minus
chr3R 27901430 chr3R 19521460..19522033 890..317 2810 99.3 Minus
chr3R 27901430 chr3R 19519789..19520104 2148..1833 1580 100 Minus
chr3R 27901430 chr3R 19522095..19522411 317..1 1540 99.1 Minus
chr3R 27901430 chr3R 19520357..19520574 1709..1492 1075 99.5 Minus
chr3R 27901430 chr3R 19520168..19520296 1835..1707 645 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:17:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:05:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23697223..23697825 1492..890 3015 100 Minus
3R 32079331 3R 23698046..23698619 890..317 2870 100 Minus
3R 32079331 3R 23696370..23696687 2150..1833 1590 100 Minus
3R 32079331 3R 23698682..23698998 317..1 1585 100 Minus
3R 32079331 3R 23696940..23697157 1709..1492 1090 100 Minus
3R 32079331 3R 23696751..23696879 1835..1707 645 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:00:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 23438054..23438656 1492..890 3015 100 Minus
3R 31820162 3R 23438877..23439450 890..317 2870 100 Minus
3R 31820162 3R 23437201..23437518 2150..1833 1590 100 Minus
3R 31820162 3R 23439513..23439829 317..1 1585 100 Minus
3R 31820162 3R 23437771..23437988 1709..1492 1090 100 Minus
3R 31820162 3R 23437582..23437710 1835..1707 645 100 Minus
Blast to na_te.dros performed 2019-03-16 11:05:55
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1050..1150 623..726 143 62.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2796..2854 691..750 135 71.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2289..2396 621..726 130 59.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2790..2816 700..726 117 92.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6754..6830 651..727 115 61 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2312..2408 624..726 114 60.2 Plus

IP12904.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:06:47 Download gff for IP12904.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 19520169..19520293 1710..1834 100 <- Minus
chr3R 19520357..19520573 1493..1709 99 <- Minus
chr3R 19519789..19520102 1835..2148 100 <- Minus
chr3R 19520640..19521241 891..1492 99 <- Minus
chr3R 19521460..19522032 318..890 99 <- Minus
chr3R 19522095..19522411 1..317 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:53:46 Download gff for IP12904.complete
Subject Subject Range Query Range Percent Splice Strand
CG10251-RB 1..1809 119..1927 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:06:11 Download gff for IP12904.complete
Subject Subject Range Query Range Percent Splice Strand
CG10251-RB 1..1809 119..1927 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:07:33 Download gff for IP12904.complete
Subject Subject Range Query Range Percent Splice Strand
prt-RB 1..1809 119..1927 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:14:34 Download gff for IP12904.complete
Subject Subject Range Query Range Percent Splice Strand
CG10251-RB 1..1809 119..1927 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:26:27 Download gff for IP12904.complete
Subject Subject Range Query Range Percent Splice Strand
prt-RB 1..1809 119..1927 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:33:50 Download gff for IP12904.complete
Subject Subject Range Query Range Percent Splice Strand
CG10251-RB 30..2167 1..2138 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:06:11 Download gff for IP12904.complete
Subject Subject Range Query Range Percent Splice Strand
CG10251-RB 30..2167 1..2138 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:07:33 Download gff for IP12904.complete
Subject Subject Range Query Range Percent Splice Strand
prt-RB 30..2177 1..2148 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:14:35 Download gff for IP12904.complete
Subject Subject Range Query Range Percent Splice Strand
CG10251-RB 30..2167 1..2138 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:26:27 Download gff for IP12904.complete
Subject Subject Range Query Range Percent Splice Strand
prt-RB 30..2177 1..2148 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:06:47 Download gff for IP12904.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23696940..23697156 1493..1709 100 <- Minus
3R 23696372..23696685 1835..2148 100 <- Minus
3R 23696752..23696876 1710..1834 100 <- Minus
3R 23697223..23697824 891..1492 100 <- Minus
3R 23698046..23698618 318..890 100 <- Minus
3R 23698682..23698998 1..317 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:06:47 Download gff for IP12904.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23696940..23697156 1493..1709 100 <- Minus
3R 23696372..23696685 1835..2148 100 <- Minus
3R 23696752..23696876 1710..1834 100 <- Minus
3R 23697223..23697824 891..1492 100 <- Minus
3R 23698046..23698618 318..890 100 <- Minus
3R 23698682..23698998 1..317 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:06:47 Download gff for IP12904.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23696940..23697156 1493..1709 100 <- Minus
3R 23696372..23696685 1835..2148 100 <- Minus
3R 23696752..23696876 1710..1834 100 <- Minus
3R 23697223..23697824 891..1492 100 <- Minus
3R 23698046..23698618 318..890 100 <- Minus
3R 23698682..23698998 1..317 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:07:33 Download gff for IP12904.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19522094..19522407 1835..2148 100 <- Minus
arm_3R 19522474..19522598 1710..1834 100 <- Minus
arm_3R 19522662..19522878 1493..1709 100 <- Minus
arm_3R 19522945..19523546 891..1492 100 <- Minus
arm_3R 19523768..19524340 318..890 100 <- Minus
arm_3R 19524404..19524720 1..317 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:39:40 Download gff for IP12904.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23437771..23437987 1493..1709 100 <- Minus
3R 23437203..23437516 1835..2148 100 <- Minus
3R 23437583..23437707 1710..1834 100 <- Minus
3R 23438054..23438655 891..1492 100 <- Minus
3R 23438877..23439449 318..890 100 <- Minus
3R 23439513..23439829 1..317 100   Minus

IP12904.hyp Sequence

Translation from 0 to 1926

> IP12904.hyp
QHHHLLPLRIDTLGSILCGAYREPYGSLIWRYQCAVQLAMSEKSNRAQIH
SNSRSKSQNQAAVQLNAPGRRSSTPSGANGSSNRCLIAVIVYLALLLDNM
LLTVIVPILPDYLASLEADTSSAVVLSLEDTSSFSKLGYRSGESPGGGHP
QLYISKHPIPGKSMVNFTLLQLSTEATTTTTSIATTTNSPHNSTSMQSPP
KLTVGQSGGTNVTGIGHKSRNRKLASGHPPTHDNSSNDNSNKELTLTQEN
GSIGLLLAMKALVQLIFNPIVGNASSKFGYRLPIVVGTFFLLLSSLVFTV
GESYWALLVARAVQGVGSACINICGMSLVAQHYPEEARRSKVMGIILGSI
ALGVLLGYPFGGILYDLMGKSAPFIILSTLMFLSLGLQLLTMDLTVQPEV
VVEDRPKWRSLLECKMILAIVLAIWFSTSTMAMLEPCLPIWLIQYLKPNK
WQLGTVFIPDSVGYFVGTNFFGSIAYKYGQVKVSCISLLLVGVASILIPS
ATTVAQLLLPHFALGLGIGVIDAALVPLLATFVDATLAQEDQGEGSSSMS
SYGTVYAIQQTSVSLAYCLAPLIGGELAQTFGFAWLMRIVGIFNMIYGPI
LVYLHQKYDPKALREQHNDMLLQSSGRGSRYKQLYNSMDVE*

IP12904.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:52:03
Subject Length Description Subject Range Query Range Score Percent Strand
prt-PB 602 CG10251-PB 1..602 40..641 3047 100 Plus
Vmat-PC 610 CG33528-PC 202..577 216..604 701 34.7 Plus
Vmat-PE 610 CG33528-PE 202..577 216..604 701 34.7 Plus
Vmat-PF 610 CG33528-PF 202..577 216..604 701 34.7 Plus
Vmat-PD 646 CG33528-PD 202..577 216..604 701 34.7 Plus

IP12904.pep Sequence

Translation from 1 to 1926

> IP12904.pep
QHHHLLPLRIDTLGSILCGAYREPYGSLIWRYQCAVQLAMSEKSNRAQIH
SNSRSKSQNQAAVQLNAPGRRSSTPSGANGSSNRCLIAVIVYLALLLDNM
LLTVIVPILPDYLASLEADTSSAVVLSLEDTSSFSKLGYRSGESPGGGHP
QLYISKHPIPGKSMVNFTLLQLSTEATTTTTSIATTTNSPHNSTSMQSPP
KLTVGQSGGTNVTGIGHKSRNRKLASGHPPTHDNSSNDNSNKELTLTQEN
GSIGLLLAMKALVQLIFNPIVGNASSKFGYRLPIVVGTFFLLLSSLVFTV
GESYWALLVARAVQGVGSACINICGMSLVAQHYPEEARRSKVMGIILGSI
ALGVLLGYPFGGILYDLMGKSAPFIILSTLMFLSLGLQLLTMDLTVQPEV
VVEDRPKWRSLLECKMILAIVLAIWFSTSTMAMLEPCLPIWLIQYLKPNK
WQLGTVFIPDSVGYFVGTNFFGSIAYKYGQVKVSCISLLLVGVASILIPS
ATTVAQLLLPHFALGLGIGVIDAALVPLLATFVDATLAQEDQGEGSSSMS
SYGTVYAIQQTSVSLAYCLAPLIGGELAQTFGFAWLMRIVGIFNMIYGPI
LVYLHQKYDPKALREQHNDMLLQSSGRGSRYKQLYNSMDVE*

IP12904.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:18:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18748-PA 581 GF18748-PA 1..581 40..641 2241 78.5 Plus
Dana\GF11179-PA 611 GF11179-PA 203..580 216..606 699 34.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:18:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12415-PA 592 GG12415-PA 1..592 40..641 2530 86 Plus
Dere\GG22485-PA 613 GG22485-PA 205..582 216..606 699 34.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:18:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13912-PA 567 GH13912-PA 2..567 53..641 2061 73.3 Plus
Dgri\GH17299-PA 619 GH17299-PA 221..588 229..606 712 35.5 Plus
Dgri\GH23496-PA 573 GH23496-PA 73..480 229..641 521 31.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:38:46
Subject Length Description Subject Range Query Range Score Percent Strand
prt-PB 602 CG10251-PB 1..602 40..641 3047 100 Plus
Vmat-PC 610 CG33528-PC 202..577 216..604 701 34.7 Plus
Vmat-PE 610 CG33528-PE 202..577 216..604 701 34.7 Plus
Vmat-PF 610 CG33528-PF 202..577 216..604 701 34.7 Plus
Vmat-PD 646 CG33528-PD 202..577 216..604 701 34.7 Plus
VAChT-PA 578 CG32848-PA 73..480 229..641 537 31.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:18:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24831-PA 538 GI24831-PA 2..538 53..641 1831 64.5 Plus
Dmoj\GI21330-PA 621 GI21330-PA 146..590 82..606 756 33 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:18:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13834-PA 563 GL13834-PA 4..563 50..641 2049 76 Plus
Dper\GL17068-PA 615 GL17068-PA 207..584 216..606 710 35 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:18:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10193-PB 586 GA10193-PB 4..586 50..641 2263 80.8 Plus
Dpse\GA24351-PA 616 GA24351-PA 208..585 216..606 710 35 Plus
Dpse\GA17179-PB 581 GA17179-PB 73..480 229..641 538 31.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:18:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23549-PA 491 GM23549-PA 219..491 343..641 1124 76.9 Plus
Dsec\GM23549-PA 491 GM23549-PA 1..275 40..309 1063 89.2 Plus
Dsec\GM20272-PA 578 GM20272-PA 205..413 216..426 377 37 Plus
Dsec\GM20272-PA 578 GM20272-PA 404..521 488..614 170 28.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:18:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18364-PA 571 GD18364-PA 1..571 40..628 2593 91.3 Plus
Dsim\GD25754-PA 613 GD25754-PA 205..582 216..606 698 34.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:18:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24475-PA 533 GJ24475-PA 2..533 53..641 1943 69.6 Plus
Dvir\GJ19675-PA 614 GJ19675-PA 215..583 231..606 709 36 Plus
Dvir\GJ14407-PA 562 GJ14407-PA 73..480 229..641 513 30.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:18:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14095-PA 579 GK14095-PA 1..579 40..641 1829 66 Plus
Dwil\GK15611-PA 612 GK15611-PA 214..581 231..606 701 35.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:18:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23934-PA 588 GE23934-PA 1..588 40..641 2492 85.1 Plus
Dyak\GE13356-PA 498 GE13356-PA 54..441 216..614 695 34.4 Plus