Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
IP13102.complete Sequence
1914 bp assembled on 2007-09-17
GenBank Submission: BT030843
> IP13102.complete
AAGACACTCCCACACCAGCTGTGTGTATGCGGTTTAGTTGGCCAACCGCA
AAATTCTTGGCAAACAAAATAAAGAAAACTAACTTGGGCCGAAGCAGAGC
AGATCCAAGCGGCAACGGAAATTGTTAACCTTTGGGGATATCAAACATTT
ACGATTGCGTGGCAGCGGCAGCAACATTTAAGTTTTTATCAGCACAAAAT
AAAGTTTTGGTTTACGGATTGTGTTCCTGTCCGCCAACGCTCCTCCTACT
ATCCACCACTTTTTGGCCAGAGGCAGCTACAAGTGCCCAGGAGCCAAGAC
AGGAGCAAAATTCAGGAGCAGAAGCTGGATCAGGGGCTGAAGGTTCGTCC
CTGTTGATTCTGGGGCACGCAAAACTTTTATCCTTTTCAATTTCGTTTTT
CTTCGCCGAGTACTTTTGAGGGATTTAAATTTCTGTTTGCAGCCGAGCCA
ACAGCGAAACAACAACCGTGGGAGTGGCAGCATCGAGTTCGTGGCGACCA
GCCGTCATGAAGAAGAAGAGTCGTAGAGATCGGACACCAAAAGTAGAACA
ACCTGAACCATCGAGAGTTGTCAACACGGAGCCTATTCGACTGAACGTGG
AACCCCAATCCCAAGAGATAGATGACCAGGCTGCACCATTTATTTTGGTA
GACTGTGCGAAATATGAGGATCGTTCAGATTTGGAAGCAATGCTTAGTTC
CATAGAAAAGGAACGGATGAAAAAGGTTCAGGCAGATATAGAGCAGCAAT
ATTTTCCCCTCCTGGAGGATGAAGAACCACCTCCAGAATTAGATATGCCT
ATAAACCTAAGCTCTCAAGCATTGGCTGTACTGAATGATGCAGATAATGA
GCGCCGCTTTAAAGAGGATCTGGAGAGCCTTAGTATTGCTGGACTGGAAG
AGAAAGATACATCCATTAGCATTACCAACATGAAAATAGAAGACAGCAAA
CTATTGTTTCGGACTATGCCAGGTATGAATCAGATTTGCTGCACGCTAGA
GCAGATGAAAAATGTTCATGGGAAAATTGGACCAGCAGAACCAACTCCAC
AGGCACGTTGCACCAGCTTGATTCCACTTTCAGGCCTTCGCCGGCAAGAC
ACCTTCGAAATTAAACGTAAAAAGAACCAAAAGATTAGATATCCCGAGGT
TTCCACCAAATCAGCAATTAGCGAAAGGAAACATCTACCATTAATTGCCA
AGGGAGGAAAATGTGAGAAAGTTATCTCAGAGACTGATAAGATTTTCAGC
CAGATTGGCGATCTTCTCGTGAAACTGCAGCTCCAACACGAGGGCAGCAA
AGTCCTGAACAAGGGATCCTCTTATTCCTACATGGTGAACATTAAGCCAG
CTGGAGGTGCATCCAATTGTTCAGTTTATGCGCTTACAAAACTCAAATCG
CACGAAGTAGAGGAGACGCATGCCGAAAATCTAAGAACTTCTCACGCTCC
ATTGATCAACATTTTATACCCTGGTCGTGGTGGACTTATGGAGACTTCTG
AGTTGTCCACGACCGCACGATGTATCGATGGAAGCTCCATTGGGTCGATG
TCCCTTCGCGAAACGCCGTCCTCCAAGATCAAACCATCATTTTTACGCAA
AAGGCCCAGTTCCCATCTAAGGGCACCTAACCCTGTCAAATTTTGCCACG
GCAGGAAGAAAAATTAGGCCGCTTGGTAACCATTCCGCAAATTATTTGTT
CGAAAGCCATTTATTTTCTATCGACATTGGAATCTCCAAATAATGCTTAC
AAATTCATATGTTGGTCATTCAAAAGGATCTTGAATGGATATTTTATGCA
AAAATATATCAGTTGCCAGAGTCTAATGAACGGTAATAATTCAACAAATG
CATACAATGCGGCCATAATATAAAATATTAAGTGATACAAAACAAAAAAA
AAAAAAAAAAAAAA
IP13102.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 16:37:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10164-RA | 1959 | CG10164-RA | 41..1936 | 1..1896 | 9480 | 100 | Plus |
CG10164.b | 2464 | CG10164.b | 274..2169 | 1..1896 | 9480 | 100 | Plus |
CG10164.a | 2192 | CG10164.a | 274..2169 | 1..1896 | 9480 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:11:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 19377994..19379388 | 1893..499 | 6915 | 99.7 | Minus |
chr3R | 27901430 | chr3R | 19379606..19380105 | 501..1 | 2395 | 99 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:18:33 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:11:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23554618..23556015 | 1896..499 | 6990 | 100 | Minus |
3R | 32079331 | 3R | 23556233..23556733 | 501..1 | 2505 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:34:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 23295449..23296846 | 1896..499 | 6990 | 100 | Minus |
3R | 31820162 | 3R | 23297064..23297564 | 501..1 | 2505 | 100 | Minus |
Blast to na_te.dros performed on 2019-03-15 15:11:16 has no hits.
IP13102.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:12:07 Download gff for
IP13102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 19377994..19379385 | 502..1893 | 99 | <- | Minus |
chr3R | 19379606..19380105 | 1..501 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:54:20 Download gff for
IP13102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10164-RA | 1..1161 | 507..1667 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:07:56 Download gff for
IP13102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10164-RB | 1..1161 | 507..1667 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:06:15 Download gff for
IP13102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10164-RA | 1..1161 | 507..1667 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:54:28 Download gff for
IP13102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10164-RA | 1..1161 | 507..1667 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:30:30 Download gff for
IP13102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10164-RA | 1..1161 | 507..1667 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:05:04 Download gff for
IP13102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10164-RA | 43..1935 | 1..1893 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:07:56 Download gff for
IP13102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10164-RB | 41..1933 | 1..1893 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:06:15 Download gff for
IP13102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10164-RA | 41..1933 | 1..1893 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:54:28 Download gff for
IP13102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10164-RA | 43..1935 | 1..1893 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:30:30 Download gff for
IP13102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10164-RA | 41..1933 | 1..1893 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:12:07 Download gff for
IP13102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23554621..23556012 | 502..1893 | 100 | <- | Minus |
3R | 23556233..23556733 | 1..501 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:12:07 Download gff for
IP13102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23554621..23556012 | 502..1893 | 100 | <- | Minus |
3R | 23556233..23556733 | 1..501 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:12:07 Download gff for
IP13102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23554621..23556012 | 502..1893 | 100 | <- | Minus |
3R | 23556233..23556733 | 1..501 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:06:15 Download gff for
IP13102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19380343..19381734 | 502..1893 | 100 | <- | Minus |
arm_3R | 19381955..19382455 | 1..501 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:00:13 Download gff for
IP13102.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23295452..23296843 | 502..1893 | 100 | <- | Minus |
3R | 23297064..23297564 | 1..501 | 100 | | Minus |
IP13102.hyp Sequence
Translation from 506 to 1666
> IP13102.hyp
MKKKSRRDRTPKVEQPEPSRVVNTEPIRLNVEPQSQEIDDQAAPFILVDC
AKYEDRSDLEAMLSSIEKERMKKVQADIEQQYFPLLEDEEPPPELDMPIN
LSSQALAVLNDADNERRFKEDLESLSIAGLEEKDTSISITNMKIEDSKLL
FRTMPGMNQICCTLEQMKNVHGKIGPAEPTPQARCTSLIPLSGLRRQDTF
EIKRKKNQKIRYPEVSTKSAISERKHLPLIAKGGKCEKVISETDKIFSQI
GDLLVKLQLQHEGSKVLNKGSSYSYMVNIKPAGGASNCSVYALTKLKSHE
VEETHAENLRTSHAPLINILYPGRGGLMETSELSTTARCIDGSSIGSMSL
RETPSSKIKPSFLRKRPSSHLRAPNPVKFCHGRKKN*
IP13102.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:55:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10164-PB | 386 | CG10164-PB | 1..386 | 1..386 | 1975 | 100 | Plus |
CG10164-PA | 386 | CG10164-PA | 1..386 | 1..386 | 1975 | 100 | Plus |
IP13102.pep Sequence
Translation from 506 to 1666
> IP13102.pep
MKKKSRRDRTPKVEQPEPSRVVNTEPIRLNVEPQSQEIDDQAAPFILVDC
AKYEDRSDLEAMLSSIEKERMKKVQADIEQQYFPLLEDEEPPPELDMPIN
LSSQALAVLNDADNERRFKEDLESLSIAGLEEKDTSISITNMKIEDSKLL
FRTMPGMNQICCTLEQMKNVHGKIGPAEPTPQARCTSLIPLSGLRRQDTF
EIKRKKNQKIRYPEVSTKSAISERKHLPLIAKGGKCEKVISETDKIFSQI
GDLLVKLQLQHEGSKVLNKGSSYSYMVNIKPAGGASNCSVYALTKLKSHE
VEETHAENLRTSHAPLINILYPGRGGLMETSELSTTARCIDGSSIGSMSL
RETPSSKIKPSFLRKRPSSHLRAPNPVKFCHGRKKN*
IP13102.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:59:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF19951-PA | 446 | GF19951-PA | 35..446 | 30..386 | 498 | 35.5 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:59:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG12423-PA | 401 | GG12423-PA | 4..401 | 2..386 | 1392 | 68.6 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:54:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10164-PB | 386 | CG10164-PB | 1..386 | 1..386 | 1975 | 100 | Plus |
CG10164-PA | 386 | CG10164-PA | 1..386 | 1..386 | 1975 | 100 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:59:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM23557-PA | 355 | GM23557-PA | 1..355 | 1..386 | 1464 | 75.3 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:59:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD18374-PA | 355 | GD18374-PA | 1..355 | 1..386 | 1444 | 74.5 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:59:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK13414-PA | 455 | GK13414-PA | 48..338 | 42..288 | 153 | 23.9 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:59:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE23945-PA | 401 | GE23945-PA | 4..401 | 2..386 | 1301 | 65.6 | Plus |