Clone IP13142 Report

Search the DGRC for IP13142

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:131
Well:42
Vector:pOT2
Associated Gene/TranscriptCG13283-RA
Protein status:IP13142.pep: gold
Preliminary Size:1959
Sequenced Size:2128

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13283 2005-01-01 Successful iPCR screen
CG13283 2008-04-29 Release 5.5 accounting
CG13283 2008-08-15 Release 5.9 accounting
CG13283 2008-12-18 5.12 accounting

Clone Sequence Records

IP13142.complete Sequence

2128 bp (2128 high quality bases) assembled on 2005-04-11

GenBank Submission: BT022812

> IP13142.complete
CGGATCACAATAAAATATAAACTAAATGCGCTGGAAGCTTCAGTTTGTTT
TATTCGCTATAATTCAAATAGTGAGGTCCCAGAATGGAGAAGATTCGGAT
TCAGATACGGAAGTGGAAATGGATTCCGAGGTAGAATCGGGCCAGTTTTT
TAGCCATTTGTACAAGAGCAACTTGCAACAGTTGGTGAAAATTAAGAATG
ACTCAATGGATCCGTGTGATGACTTCTATGCACATGCTTGTGGAAACTTC
GATCAAACGAAGGAGGAAAATTCCGATGATTTTCTTCCACCCTATCTGTA
TAACAAACAGGACAGAATGAACTTCTTCACAGCTGAGGTTGGAAATTTTG
AAACTATACCAGGACGATTGATTTCTCAACTTTATACGGAATGCCGAAAG
AGGGAAGAACGAAATGTTTTCACCCCTACTCGATTGACTTCTCACTGGGA
ACGTATGCTCGATGAGATCCCATTCCTGGCCAGGCATAAAGAGGTGCTCT
CTTCCTGGCCTTTCCTTAAACATCAATGGGAGCGAAGGCGCCTTTATGGG
CAGCTGAATTGGATAGTTCTGTCAGCACAACTGGCAGCCCATGGCCTACC
CACTTTACTTCATATCTACTTTGCCTTGGATACGATTTATGTGAGTCCCA
TGGAGGAGCTGCCCTGTCCTAGTATCGCGGACTTTCAATCTAGCCTGTCT
GATGTCTTGGAAGGTAGACATCATCAAGTATCCCGTATAATATCACATGA
GATGAGGGTTCTGTGTCGCGAAATGAGAGGAGAACTTCCGCTCGTAAGAA
GTTTGAGCCAGAATACCAGAACCAACACCTCCAGACCAGGTGAAGAACAG
CTTCTTCTGGATGAAAACACCATGGATTATTTTCAGCAGTATTTTGCCGC
ACTTAACTTCTCCGAGGAACGGCTGGTGGGAGCACGCAAGTTTCCTCTCG
ATGTCGAGAAGATCACTCAAGCCTGGGAAGTTCTCAGACATACGGAAACT
CGCATAGTGTACAACTATGTGATGTGGCAGGCCAGGGAGCAGCTTCGATA
TCCGGACTGCTATAGGGTATCTGAGGAATTCGAGAGACTACTGCACGCTG
AATACTGGCAATGGCATGTTTTGAGACGCCATCTGAGCAGGGAAGTCGCT
CTGGCATCATATCAACTTCATACCACTCGCTTCCAAAAACTAAGGAGATC
CAAGTTGTCCAGAAGAGATTGGTATGGGCACCTGTGGCCAGCTTCTGTGG
AGAAGAAGGAGCTTCAGGTGGCACGCATCCTCCAAAATCATGCAGAAAAC
TATCTGAATATAACTGAACTAAATGAAAACTACGAAGGATTGAAATTGGA
AAAGAACTCCTTTTATGCAAATCTTCTGATCCTTAGACGGGCTCAACTGC
GCCATAGTTTCGTATCGCCTTATGTGGACGAGGAAGATGTAAATCAGCCA
GCATATTTCTTGAGGCACTTCCTTCACTTTGTACTGCTTTCCTTGCACCG
CCCTACTTATCACTATTATGCCACACACGGCTTGGAACTTTGGAGGGAGT
CCCGACTTCTCTTGGATACCGATGGCCACTATACCGCCATGGATTGCCTA
GAACGGCAATCATTCCAACACTACGATGCAAAATTGGCTCCAATTTACAG
ACCACTTGGTTCGCACGAGATCGCCGAGATCTTCCAGTTTTATCGCTCTT
TTCAGTATTCCCTCACGGACTATCACTTTTGGCTTCAGGGTGAAAGGTTC
GCCTTTGCCGAGACCTTTGTGCTGGACTACTTCGGATTGAATCCACACAG
GGTACTCTTCTATGCGGTGGCCCAGCAGTTATGTAACCGCCAAACGGAGA
TATTTGCTGCCCAATTGAATAGGGGCTATATGAATCTTCCCGAGTTCCAG
GAGGCTTTCAAGTGCGGAGCCGAAAAGGCCATGAATCCCCCATCCAGATG
CATGATCAACATGTGTGAAAGGCCACATACTTGATGTTTTCAACTTTAAA
ATTTTAATTTAAAATCATTTTAATGAAGATATGTTAGAGATAAAAAATAA
AATGTATTGTTATATTTACCTAGTCATTGGAAATATACTTGTTATCAACA
TTCACTATAAAAAAAAAAAAAAAAAAAA

IP13142.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:37:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG13283-RA 2123 CG13283-RA 16..2123 1..2108 10540 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:00:31
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 16833827..16835926 2108..1 10280 99.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:18:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:00:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16835132..16837243 2112..1 10560 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:27:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16835132..16837243 2112..1 10560 100 Minus
Blast to na_te.dros performed 2019-03-16 09:00:30
Subject Length Description Subject Range Query Range Score Percent Strand
TAHRE 10463 TAHRE OSV 10463bp 10148..10254 1982..2089 149 63.3 Plus
1360 3409 1360 1360 3409bp 2999..3083 2070..1980 116 63.7 Minus

IP13142.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:01:40 Download gff for IP13142.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 16833827..16835926 1..2108 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:54:25 Download gff for IP13142.complete
Subject Subject Range Query Range Percent Splice Strand
CG13283-RA 1..1959 26..1984 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:02:44 Download gff for IP13142.complete
Subject Subject Range Query Range Percent Splice Strand
CG13283-RA 1..1959 26..1984 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:55:35 Download gff for IP13142.complete
Subject Subject Range Query Range Percent Splice Strand
CG13283-RA 1..1959 26..1984 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:46:45 Download gff for IP13142.complete
Subject Subject Range Query Range Percent Splice Strand
CG13283-RA 1..1959 26..1984 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:55:51 Download gff for IP13142.complete
Subject Subject Range Query Range Percent Splice Strand
CG13283-RA 1..1959 26..1984 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:47:53 Download gff for IP13142.complete
Subject Subject Range Query Range Percent Splice Strand
CG13283-RA 1..1959 26..1984 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:02:44 Download gff for IP13142.complete
Subject Subject Range Query Range Percent Splice Strand
CG13283-RA 16..2123 1..2108 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:55:35 Download gff for IP13142.complete
Subject Subject Range Query Range Percent Splice Strand
CG13283-RA 16..2123 1..2108 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:46:45 Download gff for IP13142.complete
Subject Subject Range Query Range Percent Splice Strand
CG13283-RA 1..1959 26..1984 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:55:51 Download gff for IP13142.complete
Subject Subject Range Query Range Percent Splice Strand
CG13283-RA 16..2123 1..2108 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:01:40 Download gff for IP13142.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16835136..16837243 1..2108 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:01:40 Download gff for IP13142.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16835136..16837243 1..2108 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:01:40 Download gff for IP13142.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16835136..16837243 1..2108 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:55:35 Download gff for IP13142.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16835136..16837243 1..2108 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:22:28 Download gff for IP13142.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16835136..16837243 1..2108 100   Minus

IP13142.pep Sequence

Translation from 25 to 1983

> IP13142.pep
MRWKLQFVLFAIIQIVRSQNGEDSDSDTEVEMDSEVESGQFFSHLYKSNL
QQLVKIKNDSMDPCDDFYAHACGNFDQTKEENSDDFLPPYLYNKQDRMNF
FTAEVGNFETIPGRLISQLYTECRKREERNVFTPTRLTSHWERMLDEIPF
LARHKEVLSSWPFLKHQWERRRLYGQLNWIVLSAQLAAHGLPTLLHIYFA
LDTIYVSPMEELPCPSIADFQSSLSDVLEGRHHQVSRIISHEMRVLCREM
RGELPLVRSLSQNTRTNTSRPGEEQLLLDENTMDYFQQYFAALNFSEERL
VGARKFPLDVEKITQAWEVLRHTETRIVYNYVMWQAREQLRYPDCYRVSE
EFERLLHAEYWQWHVLRRHLSREVALASYQLHTTRFQKLRRSKLSRRDWY
GHLWPASVEKKELQVARILQNHAENYLNITELNENYEGLKLEKNSFYANL
LILRRAQLRHSFVSPYVDEEDVNQPAYFLRHFLHFVLLSLHRPTYHYYAT
HGLELWRESRLLLDTDGHYTAMDCLERQSFQHYDAKLAPIYRPLGSHEIA
EIFQFYRSFQYSLTDYHFWLQGERFAFAETFVLDYFGLNPHRVLFYAVAQ
QLCNRQTEIFAAQLNRGYMNLPEFQEAFKCGAEKAMNPPSRCMINMCERP
HT*

IP13142.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 15:20:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19677-PA 651 GF19677-PA 1..649 1..648 2664 73.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 15:20:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20103-PA 654 GG20103-PA 1..654 1..652 3081 87.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 15:20:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13105-PA 650 GH13105-PA 7..650 2..648 2294 65.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:22:42
Subject Length Description Subject Range Query Range Score Percent Strand
Nepl9-PA 652 CG13283-PA 1..652 1..652 3496 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 15:20:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14197-PA 637 GI14197-PA 1..637 1..648 2270 65.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 15:20:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19327-PA 645 GL19327-PA 1..645 1..648 2430 71.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 15:20:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12170-PA 645 GA12170-PA 1..645 1..648 2430 72.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 15:20:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17153-PA 653 GM17153-PA 1..653 1..652 3214 91.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 15:20:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17805-PA 70 GD17805-PA 1..70 583..652 349 90 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 15:20:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23032-PA 647 GJ23032-PA 1..647 1..648 2307 64.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 15:20:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18901-PA 636 GK18901-PA 10..629 9..648 1858 53.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 15:20:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13159-PA 650 GE13159-PA 1..650 1..652 3169 89.9 Plus

IP13142.hyp Sequence

Translation from 25 to 1983

> IP13142.hyp
MRWKLQFVLFAIIQIVRSQNGEDSDSDTEVEMDSEVESGQFFSHLYKSNL
QQLVKIKNDSMDPCDDFYAHACGNFDQTKEENSDDFLPPYLYNKQDRMNF
FTAEVGNFETIPGRLISQLYTECRKREERNVFTPTRLTSHWERMLDEIPF
LARHKEVLSSWPFLKHQWERRRLYGQLNWIVLSAQLAAHGLPTLLHIYFA
LDTIYVSPMEELPCPSIADFQSSLSDVLEGRHHQVSRIISHEMRVLCREM
RGELPLVRSLSQNTRTNTSRPGEEQLLLDENTMDYFQQYFAALNFSEERL
VGARKFPLDVEKITQAWEVLRHTETRIVYNYVMWQAREQLRYPDCYRVSE
EFERLLHAEYWQWHVLRRHLSREVALASYQLHTTRFQKLRRSKLSRRDWY
GHLWPASVEKKELQVARILQNHAENYLNITELNENYEGLKLEKNSFYANL
LILRRAQLRHSFVSPYVDEEDVNQPAYFLRHFLHFVLLSLHRPTYHYYAT
HGLELWRESRLLLDTDGHYTAMDCLERQSFQHYDAKLAPIYRPLGSHEIA
EIFQFYRSFQYSLTDYHFWLQGERFAFAETFVLDYFGLNPHRVLFYAVAQ
QLCNRQTEIFAAQLNRGYMNLPEFQEAFKCGAEKAMNPPSRCMINMCERP
HT*

IP13142.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:56:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG13283-PA 652 CG13283-PA 1..652 1..652 3496 100 Plus