Clone IP13253 Report

Search the DGRC for IP13253

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:132
Well:53
Vector:pOT2
Associated Gene/TranscriptCG33460-RA
Protein status:IP13253.pep: gold
Preliminary Size:1826
Sequenced Size:981

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG30086 2005-01-01 Successful iPCR screen
CG33460 2008-04-29 Release 5.5 accounting
CG33460 2008-08-15 Release 5.9 accounting
CG33460 2008-12-18 5.12 accounting

Clone Sequence Records

IP13253.complete Sequence

981 bp (981 high quality bases) assembled on 2005-03-06

GenBank Submission: BT022824

> IP13253.complete
TCGGAATGAACGCCACATTAACTATATCGTTGCTCGCCAGTTATATGCTT
GTTATATATTCCGATTCTGTATCGGCAAATTATCTTTACGAGCAATGCGG
TCTTATGCGAGAAGAGTTTTCAACATCTTTGGGTCCCTGGACAGCTCTAC
TGCACACGGATGGTAGTATCTTTTGTGCCGGAACGCTGATAACTGATGTT
TTCATACTGACTGCAGCGAGCTGTATTCGACCAAACGCCGTTAAAGTTCG
TTTGGGAGAGTTTGGCAGATATCCCAATGAATTGCCAGAAGATCATTTGG
TGCACTATTTTCTGATGTATCGGCTTTTCAACAATGAATCGCTAGCCAAT
AACATCGGTCTACTGAAATTAACCAAAAGAGTGCAAATTACAGACTACAT
TATGCCGGTTTGCATTGTCCTCAACCCGCAGAATCAGCAGCTATCGACTA
TGCGATTCATCGGAAATGCCTGGATGGAAGACAGCAATGTGTCCTTAACC
AAGGAGTTACGACCCATTGTCATCCAGAGTAAGCCGAAGATGTGCACTAA
CCTTGACTTGTACACCCAGTTTTGTGCTGGCCACCAGGGCAATTTGAGGT
CATGCGACGGCCTCACCGGCTCGGCACTGATCCAGAATTCTAGATATATG
AACAAATATCGGCATATTCAGTTCGGCATCGCGACTGTGAACGATATGGA
TTGCGAGGAGTCACAGGGTTATACCGATGTGTTGAAATTCTACTGGTGGA
TCCAGGATGTGGTGTCACTGTTCAATCATTATTCAACAAATGAGAGCTAT
ATTGTAAATGATTATATTAAGAAAAACTTCTGAGTTCGGGAAAGCGTATT
TACGGAACAGAAACTTCCTATGATTTTTTCATGCTACAATAAAATGTATA
CTAAAACTATACTAAATTGAATTCTAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

IP13253.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:47:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG33460-RA 1232 CG33460-RA 212..1142 1..931 4655 100 Plus
CG33460.a 842 CG33460.a 26..759 198..931 3670 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:37:06
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 11581879..11582413 391..925 2660 99.8 Plus
chr2R 21145070 chr2R 11581292..11581489 1..198 990 100 Plus
chr2R 21145070 chr2R 11581656..11581807 242..393 760 100 Plus
chr2R 21145070 chr2R 11581553..11581603 198..248 225 96.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:19:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:37:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15694698..15695238 391..931 2705 100 Plus
2R 25286936 2R 15694113..15694310 1..198 990 100 Plus
2R 25286936 2R 15694477..15694628 242..393 760 100 Plus
2R 25286936 2R 15694374..15694424 198..248 225 96.1 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:36:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 15695897..15696437 391..931 2705 100 Plus
2R 25260384 2R 15695312..15695509 1..198 990 100 Plus
2R 25260384 2R 15695676..15695827 242..393 760 100 Plus
2R 25260384 2R 15695573..15695623 198..248 225 96 Plus
Blast to na_te.dros performed on 2019-03-16 07:37:05 has no hits.

IP13253.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:38:17 Download gff for IP13253.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 11581292..11581489 1..198 100 -> Plus
chr2R 11581554..11581596 199..241 100 -> Plus
chr2R 11581656..11581807 242..393 100 -> Plus
chr2R 11581882..11582413 394..925 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:54:39 Download gff for IP13253.complete
Subject Subject Range Query Range Percent Splice Strand
CG33460-RA 1..828 6..833 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:16:51 Download gff for IP13253.complete
Subject Subject Range Query Range Percent Splice Strand
CG33460-RA 1..828 6..833 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:33:06 Download gff for IP13253.complete
Subject Subject Range Query Range Percent Splice Strand
CG33460-RA 1..828 6..833 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:01:14 Download gff for IP13253.complete
Subject Subject Range Query Range Percent Splice Strand
CG33460-RA 1..828 6..833 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:37:45 Download gff for IP13253.complete
Subject Subject Range Query Range Percent Splice Strand
CG33460-RA 1..828 6..833 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:16:10 Download gff for IP13253.complete
Subject Subject Range Query Range Percent Splice Strand
CG33460-RA 1..925 1..925 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:16:51 Download gff for IP13253.complete
Subject Subject Range Query Range Percent Splice Strand
CG33460-RA 22..946 1..925 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:33:06 Download gff for IP13253.complete
Subject Subject Range Query Range Percent Splice Strand
CG33460-RA 22..946 1..925 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:01:14 Download gff for IP13253.complete
Subject Subject Range Query Range Percent Splice Strand
CG33460-RA 1..925 1..925 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:37:45 Download gff for IP13253.complete
Subject Subject Range Query Range Percent Splice Strand
CG33460-RA 22..946 1..925 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:38:17 Download gff for IP13253.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15694477..15694628 242..393 100 -> Plus
2R 15694701..15695232 394..925 100   Plus
2R 15694113..15694310 1..198 100 -> Plus
2R 15694375..15694417 199..241 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:38:17 Download gff for IP13253.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15694477..15694628 242..393 100 -> Plus
2R 15694701..15695232 394..925 100   Plus
2R 15694113..15694310 1..198 100 -> Plus
2R 15694375..15694417 199..241 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:38:17 Download gff for IP13253.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15694477..15694628 242..393 100 -> Plus
2R 15694701..15695232 394..925 100   Plus
2R 15694113..15694310 1..198 100 -> Plus
2R 15694375..15694417 199..241 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:33:06 Download gff for IP13253.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11581618..11581815 1..198 100 -> Plus
arm_2R 11581880..11581922 199..241 100 -> Plus
arm_2R 11581982..11582133 242..393 100 -> Plus
arm_2R 11582206..11582737 394..925 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:36:55 Download gff for IP13253.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15695900..15696431 394..925 100   Plus
2R 15695312..15695509 1..198 100 -> Plus
2R 15695574..15695616 199..241 100 -> Plus
2R 15695676..15695827 242..393 100 -> Plus

IP13253.hyp Sequence

Translation from 2 to 832

> IP13253.hyp
GMNATLTISLLASYMLVIYSDSVSANYLYEQCGLMREEFSTSLGPWTALL
HTDGSIFCAGTLITDVFILTAASCIRPNAVKVRLGEFGRYPNELPEDHLV
HYFLMYRLFNNESLANNIGLLKLTKRVQITDYIMPVCIVLNPQNQQLSTM
RFIGNAWMEDSNVSLTKELRPIVIQSKPKMCTNLDLYTQFCAGHQGNLRS
CDGLTGSALIQNSRYMNKYRHIQFGIATVNDMDCEESQGYTDVLKFYWWI
QDVVSLFNHYSTNESYIVNDYIKKNF*

IP13253.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:56:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG33460-PA 275 CG33460-PA 1..275 2..276 1457 100 Plus
CG14088-PB 289 CG14088-PB 1..256 2..263 404 38 Plus
CG30090-PA 291 CG30090-PA 21..282 24..259 289 31.6 Plus
CG18420-PA 299 CG18420-PA 55..278 45..264 278 34.1 Plus
CG43335-PA 281 CG43335-PA 54..279 45..257 262 30.5 Plus

IP13253.pep Sequence

Translation from 5 to 832

> IP13253.pep
MNATLTISLLASYMLVIYSDSVSANYLYEQCGLMREEFSTSLGPWTALLH
TDGSIFCAGTLITDVFILTAASCIRPNAVKVRLGEFGRYPNELPEDHLVH
YFLMYRLFNNESLANNIGLLKLTKRVQITDYIMPVCIVLNPQNQQLSTMR
FIGNAWMEDSNVSLTKELRPIVIQSKPKMCTNLDLYTQFCAGHQGNLRSC
DGLTGSALIQNSRYMNKYRHIQFGIATVNDMDCEESQGYTDVLKFYWWIQ
DVVSLFNHYSTNESYIVNDYIKKNF*

IP13253.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:18:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19774-PA 272 GF19774-PA 14..255 14..253 411 40.7 Plus
Dana\GF11318-PA 308 GF11318-PA 2..215 47..254 214 28.6 Plus
Dana\GF23281-PA 372 GF23281-PA 119..369 37..255 209 26.9 Plus
Dana\GF15010-PA 628 GF15010-PA 385..623 44..253 206 30.2 Plus
Dana\GF11497-PA 284 GF11497-PA 4..272 9..253 204 27.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:18:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20544-PA 278 GG20544-PA 1..278 1..275 1001 71.7 Plus
Dere\GG20540-PA 291 GG20540-PA 3..282 2..258 307 31.3 Plus
Dere\GG16935-PA 279 GG16935-PA 3..276 8..254 291 30.5 Plus
Dere\GG16934-PA 251 GG16934-PA 53..250 44..257 284 32.6 Plus
Dere\GG20542-PA 281 GG20542-PA 13..281 13..258 264 30.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:18:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20624-PA 374 GH20624-PA 94..369 11..254 204 27.8 Plus
Dgri\GH17524-PA 374 GH17524-PA 94..369 11..254 204 27.8 Plus
Dgri\GH23917-PA 235 GH23917-PA 15..230 44..251 181 30.8 Plus
Dgri\GH14456-PA 359 GH14456-PA 134..347 44..249 177 27.1 Plus
Dgri\GH20292-PA 242 GH20292-PA 4..237 44..251 175 28.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:10:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG33460-PA 275 CG33460-PA 1..275 1..275 1457 100 Plus
CG14088-PB 289 CG14088-PB 1..256 1..262 404 38 Plus
CG30090-PA 291 CG30090-PA 21..282 23..258 289 31.6 Plus
CG18420-PA 299 CG18420-PA 55..278 44..263 278 34.1 Plus
CG43335-PA 281 CG43335-PA 54..279 44..256 262 30.5 Plus
CG43336-PA 279 CG43336-PA 45..271 39..249 258 32.5 Plus
CG30088-PB 281 CG30088-PB 18..276 16..253 250 28.5 Plus
CG33462-PA 300 CG33462-PA 25..273 27..253 240 29.2 Plus
CG33461-PB 287 CG33461-PB 10..285 7..256 239 28.9 Plus
CG18636-PA 349 CG18636-PA 57..290 44..261 237 32.1 Plus
CG30286-PB 277 CG30286-PB 4..273 7..254 230 28.4 Plus
CG33465-PC 488 CG33465-PC 41..284 39..275 229 28.2 Plus
CG30283-PB 273 CG30283-PB 9..267 5..253 224 26.9 Plus
CG43742-PB 474 CG43742-PB 48..273 47..275 218 29.1 Plus
CG33459-PA 284 CG33459-PA 50..272 44..249 216 29.7 Plus
CG4650-PB 299 CG4650-PB 20..281 23..275 213 28.5 Plus
CG30288-PC 282 CG30288-PC 55..277 44..258 210 30 Plus
CG10764-PA 523 CG10764-PA 1..265 1..254 207 28.2 Plus
CG30087-PA 277 CG30087-PA 21..271 22..250 205 25.1 Plus
CG30091-PA 526 CG30091-PA 19..277 23..253 203 27.3 Plus
CG33225-PB 292 CG33225-PB 8..282 7..257 197 26.5 Plus
CG33225-PC 307 CG33225-PC 23..297 7..257 197 26.5 Plus
CG30289-PA 316 CG30289-PA 8..271 9..249 196 24.4 Plus
CG30082-PB 280 CR30082-PB 52..274 44..252 195 30 Plus
CG30083-PB 279 CG30083-PB 7..259 13..253 193 25.7 Plus
CG30002-PB 311 CG30002-PB 74..309 44..257 186 25.4 Plus
CG33458-PA 281 CG33458-PA 4..275 7..253 183 27.7 Plus
CG1773-PA 317 CG1773-PA 74..301 44..249 183 26.7 Plus
CG43110-PA 483 CG43110-PA 59..258 55..253 183 30.4 Plus
CG43110-PB 483 CG43110-PB 59..258 55..253 183 30.4 Plus
CG30187-PE 489 CG30187-PE 49..261 45..250 183 30.6 Plus
CG30187-PF 500 CG30187-PF 49..261 45..250 183 30.6 Plus
CG33226-PC 292 CG33226-PC 57..289 42..256 178 27.3 Plus
CG4914-PA 374 CG4914-PA 140..360 44..249 173 31 Plus
CG5909-PA 381 CG5909-PA 142..376 44..249 169 25 Plus
CG30098-PA 264 CG30098-PA 47..255 44..249 167 27.8 Plus
CG4613-PC 374 CG4613-PC 145..362 40..249 166 26.3 Plus
CG4613-PB 374 CG4613-PB 145..362 40..249 166 26.3 Plus
Send2-PA 239 CG18125-PA 3..229 10..253 162 23.2 Plus
CG43124-PA 245 CG43124-PA 19..144 23..148 155 34.6 Plus
CG43125-PA 258 CG43125-PA 1..140 1..140 154 36.1 Plus
CG3355-PA 314 CG3355-PA 88..303 44..250 149 26.1 Plus
CG30286-PC 152 CG30286-PC 4..140 7..127 146 34.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:18:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22268-PA 380 GI22268-PA 140..375 44..249 206 27.1 Plus
Dmoj\GI23202-PA 376 GI23202-PA 123..372 37..254 200 27.1 Plus
Dmoj\GI13812-PA 377 GI13812-PA 143..363 44..249 177 30.4 Plus
Dmoj\GI24320-PA 447 GI24320-PA 199..445 44..253 173 26.9 Plus
Dmoj\GI13599-PA 364 GI13599-PA 139..352 44..249 169 26.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:18:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11858-PA 345 GL11858-PA 4..287 9..258 325 32.6 Plus
Dper\GL11857-PA 283 GL11857-PA 3..276 5..253 278 30.8 Plus
Dper\GL17488-PA 282 GL17488-PA 53..277 44..253 258 31 Plus
Dper\GL17487-PA 304 GL17487-PA 66..281 44..253 228 30.3 Plus
Dper\GL10743-PA 279 GL10743-PA 6..274 10..253 221 30.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:18:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25145-PA 345 GA25145-PA 4..287 9..258 323 32.6 Plus
Dpse\GA15642-PA 283 GA15642-PA 3..276 5..253 281 30.8 Plus
Dpse\GA24176-PA 282 GA24176-PA 53..277 44..253 257 30.5 Plus
Dpse\GA24468-PA 278 GA24468-PA 7..275 10..255 234 29 Plus
Dpse\GA24175-PB 304 GA24175-PB 66..281 44..253 232 31.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:18:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21634-PA 273 GM21634-PA 1..273 1..275 1189 80 Plus
Dsec\GM21631-PA 291 GM21631-PA 22..282 24..258 303 31.7 Plus
Dsec\GM14676-PA 299 GM14676-PA 55..258 44..243 291 37.4 Plus
Dsec\GM15715-PA 277 GM15715-PA 13..277 18..258 260 29.6 Plus
Dsec\GM24244-PA 234 GM24244-PA 15..233 44..259 253 33.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:18:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11136-PA 273 GD11136-PA 1..273 1..275 1166 79.3 Plus
Dsim\GD12291-PA 290 GD12291-PA 1..252 1..253 441 39.3 Plus
Dsim\GD11133-PA 295 GD11133-PA 21..282 23..258 296 31.9 Plus
Dsim\GD21985-PA 299 GD21985-PA 55..258 44..243 290 37.4 Plus
Dsim\GD19034-PA 256 GD19034-PA 22..251 39..252 279 33.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:18:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21214-PA 280 GJ21214-PA 42..277 44..253 242 32.1 Plus
Dvir\GJ21978-PA 296 GJ21978-PA 3..292 1..253 233 30.4 Plus
Dvir\GJ21212-PA 268 GJ21212-PA 30..265 44..253 226 30.4 Plus
Dvir\GJ24059-PA 397 GJ24059-PA 159..392 44..249 213 29.9 Plus
Dvir\GJ22863-PA 372 GJ22863-PA 119..365 37..251 192 26.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:18:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11884-PA 375 GK11884-PA 122..372 37..255 187 25.1 Plus
Dwil\GK16800-PA 330 GK16800-PA 104..327 57..253 164 28.4 Plus
Dwil\GK19113-PA 307 GK19113-PA 96..305 56..254 158 26.5 Plus
Dwil\GK22569-PA 313 GK22569-PA 87..301 56..254 154 26.8 Plus
Dwil\GK23752-PA 324 GK23752-PA 98..313 44..250 152 26.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:18:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11728-PA 275 GE11728-PA 18..275 19..275 878 65 Plus
Dyak\GE22512-PA 214 GE22512-PA 9..178 85..257 292 40 Plus
Dyak\GE24831-PA 314 GE24831-PA 26..266 24..252 288 32.1 Plus
Dyak\GE11725-PA 296 GE11725-PA 2..279 1..258 268 30 Plus
Dyak\GE24322-PA 279 GE24322-PA 50..274 44..252 264 32.2 Plus