Clone IP13349 Report

Search the DGRC for IP13349

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:133
Well:49
Vector:pOT2
Associated Gene/TranscriptCG2861-RC
Protein status:IP13349.pep: gold
Preliminary Size:5682
Sequenced Size:2892

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2861 2008-12-18 5.12 accounting

Clone Sequence Records

IP13349.complete Sequence

2892 bp assembled on 2008-10-07

GenBank Submission: BT046145.1

> IP13349.complete
TCAGCGAGACGATCAACATCTCTGCTATGTAAAGGAAAAAAAAAAATAAA
AATTATTTTTCGGAAAAAACGACAAAACCGCGAGTGCTGAATAATAGTAG
TGCTTAATAATAATAGTTTAACAGATAATCGGACTGCAGACAATTTGCAG
ATCTGCCATCCGCAGGATCCAATTTCCAACAACAACTTTGATTGGAACTC
CATTGGATTGGGCGAACAGGAGGATGCCATTGGACAGGATCAGCAGAGCC
AGGCGCTAAACGAAAATGCGAATAATGTAAGTCCGGATGTACCTCCTTCG
ACAATTGCAGAACCAACATTGGAACCATCAACCATAGAGGGAAATCAAGG
ACAAAATCCAAGGATAATTTCGTCTATGCCTGATATGATGCCAATGGCTA
ATTCATTCAATCCACTCATTAACATAAATCAGGAAGCGGGTGTGGTAATT
AACACAGGAATAAATTCAATAGACAATGGACTACCAAGTACATACAGTGA
ACACATATCTCAGCCAACTAATACAGAATCTACAAGGAATATGAATTCTT
CAATTTTTGATATTCCCAGCGATCTAGACAATAATTCTTCAAATGAGTCT
GGCGATGAAGTAACTCAGCCCACTGCTAAACAATCTAAAATAAATGCGAA
TTTTGTTTGTAAAATAGAAAGCGATACAAACATGGATAAATTACCAACTA
CGTCCAATAATACAAACGACAAGCCGCCAAATAACACAGATTCTGATTCG
GATATTATTTCAATTTCTGATTTAATTGAAGATTTAAATTTGGATTTTAA
TCAACTACCGATTACCTCTTGTGACGTAGAAACCCATCCAGCAGACACAC
AATCTAATATCGATGCTAATTTGCCATATGATTTGATAAGTGCCATAAAT
ATGGACTTTGTCAATCCAGCTAACAGAACATATATGTCAGCTGCCAATTC
AACACGAGGAACCGCCTACAAGATTAGAAAGCCCCGGACGGTCAAGAGAA
TCATTAAGGCGCCATCAAAGTCCAACATTGGAAAGTTGTTGAGGGAAGCT
GCCAAGAAGGAAAATGCGGCTGCGGGAACGCAGAGACCGAAGAAGGCCAC
GTCGACGATAACATCTTCAGTTCAAAACTTTCCAAATCCCAATAATTGGC
CTGCATGCCCATTTCCGATGCAGAACGGCACTATGCCAGCAGATGAACCC
AATGACTTAATGCCAACGGTTTCGCAAAGTCTAACAGTGCCAGCTGCTCA
AAATCGTCCAATACAAACAATCGGAAAGATTATTAAGCCTCCTGTCAAGC
GGACTTACACGAAGAGAGCCAATAAGACCAATAATACAAATATACCAAAT
AAAAATAGTACTGGGGTCATACAGTCTAATGGAGTGGCACCTACAATACG
ACAAGGACTTGTAGAGCCCGGCGGAACTAATATTCTGATGCCATGGAATA
GGCAGATACCAATGGTGTCTGTTGCTGAAAATCCACGAGTACAAACAATC
GATAAAATAATTGTGCCTCCACCCAAGCGTACTTACAAGAAGAGAGTCAA
TAAGACCGTGAATACAAATCAGTCCTCCGAGAGTGCTGTAGGTGATGGTG
CTCCGAGTGCACCTATACAATCGATCCCCAAGGTTAGGAAGCCCAGAGGT
CCTGGAAAAAAAACTGCTAAGATGGTACCCGGTCAGGAATCTCAACAGGA
TATACCTTTAGGAGTTCCGCCAAATGGAGAAGCTCCTCAAACCTCTTCCC
AGGCACCTGTGCCTCGTGTCAAGCGGGCTTACAGGAAGAGAGCCAATAAT
ACCAATAATACAAATATACTTAATGTAAATAGTACCGGGGTCATGGAGTC
TAATGGAGGAGGACCTACAATACCAAATAGTCAGCAGATTCCAAACGTTG
CTGTTGTTCTGAATTTACCTATACAACCGATCAAGCCCAAGGCTCCCAGA
AAACCACGTGCTAAAAAAGTGTGCAACCAGCAACCGGGGACAGATATACC
CTTTGGGGTATCGGCACAAGGACAAACGGCTCAAATCAAGCCGAAGCCTA
AGCCAAGAGCTCCTAGGGTGCCCAAGGAACCTAAGGCGCCCAAGGAACCT
AAGGCGCCCAAAGTACCGAAGGCACCAAGAGTACCGAAGGCACCAAGAGT
ACCGAAGGCACCAAGAGTACCGAAGGCACCAAGAGTACCAAAGCCACCTA
AGGAACCAAAGCCACCTAAGGAACCAAAGCCACCTAAACAACCAAAGGCA
CCTAGGGTACCGAAGGAGCCGAAGCCGCCAAAGGTACCCAAGGAACCTAA
AGCGCCTAGGGCACCCAGGGCACCCAGGGTACCAAAAGCTCCAAAGGAAC
CAAAAGTACCCAAGATTCCGAAGAACCCCAGGGTACCGAAAGCACCAAGG
CAACCGAAAGCGTCAATGAATAAAATACAGAACACCGTAAAGGTACCGCT
ACCCATTGAGCCCGTACCTCTAGAAACACCCACTTACATAAATCCTATTA
ATACGCCTGTACAATCAACCGTTGGCGAGATACTCGCACTAGGGTCGATG
CCACCCATATCGCCAATTAAGTTCCCAGTACTATTTGACGAACATGCTGC
TCAGCATACCGTAGCAAACTCCAATATGCCACAATCTTCTTTGCCAACGC
TAGACATTCCACAACTTCCAACAAGGAACAACAAACAGCCATCGACGAAG
AGCGCAGAAGACACAGAAATATTAGGACTTGGCAAAAACAAAAACGCTAT
GGTATATATTATATTCATATTTATCATCATGTTTATTTATTTATTTAAGT
AAGGGCTAAAAAGCTAGAACGGTTGGGACATATAAAATTTAACTAAAGTA
CATAGTTATCATATTGTGTCTAAATAAAAAAAAAAAAAAAAA

IP13349.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:09:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG2861-RC 2875 CG2861-RC 1..2875 1..2875 14375 100 Plus
CG2861.a 5787 CG2861.a 186..2772 165..2751 12935 100 Plus
CG2861-RA 5710 CG2861-RA 109..2695 165..2751 12935 100 Plus
CG2861.a 5787 CG2861.a 1..71 97..167 355 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:18:35
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 4693585..4696102 2875..358 12590 100 Minus
chrX 22417052 chrX 4696177..4696371 357..163 975 100 Minus
chrX 22417052 chrX 4697447..4697613 166..1 785 99.4 Minus
chrX 22417052 chrX 4694121..4694362 2303..2062 370 76.9 Minus
chrX 22417052 chrX 4694157..4694398 2339..2098 370 76.9 Minus
chrX 22417052 chrX 4694587..4694699 1399..1287 355 87.6 Minus
chrX 22417052 chrX 4695061..4695173 1873..1761 355 87.6 Minus
chrX 22417052 chrX 4694050..4694309 2356..2097 205 71.9 Minus
chrX 22417052 chrX 4694104..4694363 2410..2151 205 71.9 Minus
chrX 22417052 chrX 4694891..4694987 1341..1245 185 79.4 Minus
chrX 22417052 chrX 4695119..4695215 1569..1473 185 79.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:19:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:18:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4800833..4803352 2877..358 12600 100 Minus
X 23542271 X 4803427..4803621 357..163 975 100 Minus
X 23542271 X 4804697..4804862 166..1 830 100 Minus
X 23542271 X 4801371..4801612 2303..2062 370 76.9 Minus
X 23542271 X 4801407..4801648 2339..2098 370 76.9 Minus
X 23542271 X 4801837..4801949 1399..1287 355 87.6 Minus
X 23542271 X 4802311..4802423 1873..1761 355 87.6 Minus
X 23542271 X 4801300..4801559 2356..2097 205 71.9 Minus
X 23542271 X 4801354..4801613 2410..2151 205 71.9 Minus
X 23542271 X 4802141..4802237 1341..1245 185 79.4 Minus
X 23542271 X 4802369..4802465 1569..1473 185 79.4 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:27:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 4808931..4811450 2877..358 12600 100 Minus
X 23527363 X 4811525..4811719 357..163 975 100 Minus
X 23527363 X 4812795..4812960 166..1 830 100 Minus
Blast to na_te.dros performed 2019-03-16 02:18:33
Subject Length Description Subject Range Query Range Score Percent Strand
BS3 1790 BS3 BS3 1790bp 1638..1721 1361..1280 135 68.6 Minus

IP13349.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:19:36 Download gff for IP13349.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 4693590..4696102 358..2870 100 <- Minus
chrX 4696177..4696368 166..357 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:54:58 Download gff for IP13349.complete
Subject Subject Range Query Range Percent Splice Strand
CG2861-RA 71..2667 154..2751 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:14:32 Download gff for IP13349.complete
Subject Subject Range Query Range Percent Splice Strand
CG2861-RA 71..2667 154..2751 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:19:13 Download gff for IP13349.complete
Subject Subject Range Query Range Percent Splice Strand
CG2861-RA 71..2667 154..2751 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:04:40 Download gff for IP13349.complete
Subject Subject Range Query Range Percent Splice Strand
CG2861-RA 71..2667 154..2751 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:53:01 Download gff for IP13349.complete
Subject Subject Range Query Range Percent Splice Strand
CG2861-RA 71..2667 154..2751 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:14:32 Download gff for IP13349.complete
Subject Subject Range Query Range Percent Splice Strand
CG2861-RC 1..2875 1..2875 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:19:13 Download gff for IP13349.complete
Subject Subject Range Query Range Percent Splice Strand
CG2861-RC 1..2875 1..2875 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-12 16:28:37 Download gff for IP13349.complete
Subject Subject Range Query Range Percent Splice Strand
CG2861-RA 71..2667 154..2751 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:04:40 Download gff for IP13349.complete
Subject Subject Range Query Range Percent Splice Strand
CG2861-RC 1..2875 1..2875 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:19:36 Download gff for IP13349.complete
Subject Subject Range Query Range Percent Splice Strand
X 4800835..4803352 358..2875 100 <- Minus
X 4803427..4803618 166..357 100 <- Minus
X 4804698..4804862 1..165 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:19:36 Download gff for IP13349.complete
Subject Subject Range Query Range Percent Splice Strand
X 4800835..4803352 358..2875 100 <- Minus
X 4803427..4803618 166..357 100 <- Minus
X 4804698..4804862 1..165 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:19:36 Download gff for IP13349.complete
Subject Subject Range Query Range Percent Splice Strand
X 4800835..4803352 358..2875 100 <- Minus
X 4803427..4803618 166..357 100 <- Minus
X 4804698..4804862 1..165 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:19:13 Download gff for IP13349.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 4694868..4697385 358..2875 100 <- Minus
arm_X 4697460..4697651 166..357 100 <- Minus
arm_X 4698731..4698895 1..165 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:45:15 Download gff for IP13349.complete
Subject Subject Range Query Range Percent Splice Strand
X 4811525..4811716 166..357 100 <- Minus
X 4808933..4811450 358..2875 100 <- Minus
X 4812796..4812960 1..165 100   Minus

IP13349.pep Sequence

Translation from 375 to 2801

> IP13349.pep
MPDMMPMANSFNPLININQEAGVVINTGINSIDNGLPSTYSEHISQPTNT
ESTRNMNSSIFDIPSDLDNNSSNESGDEVTQPTAKQSKINANFVCKIESD
TNMDKLPTTSNNTNDKPPNNTDSDSDIISISDLIEDLNLDFNQLPITSCD
VETHPADTQSNIDANLPYDLISAINMDFVNPANRTYMSAANSTRGTAYKI
RKPRTVKRIIKAPSKSNIGKLLREAAKKENAAAGTQRPKKATSTITSSVQ
NFPNPNNWPACPFPMQNGTMPADEPNDLMPTVSQSLTVPAAQNRPIQTIG
KIIKPPVKRTYTKRANKTNNTNIPNKNSTGVIQSNGVAPTIRQGLVEPGG
TNILMPWNRQIPMVSVAENPRVQTIDKIIVPPPKRTYKKRVNKTVNTNQS
SESAVGDGAPSAPIQSIPKVRKPRGPGKKTAKMVPGQESQQDIPLGVPPN
GEAPQTSSQAPVPRVKRAYRKRANNTNNTNILNVNSTGVMESNGGGPTIP
NSQQIPNVAVVLNLPIQPIKPKAPRKPRAKKVCNQQPGTDIPFGVSAQGQ
TAQIKPKPKPRAPRVPKEPKAPKEPKAPKVPKAPRVPKAPRVPKAPRVPK
APRVPKPPKEPKPPKEPKPPKQPKAPRVPKEPKPPKVPKEPKAPRAPRAP
RVPKAPKEPKVPKIPKNPRVPKAPRQPKASMNKIQNTVKVPLPIEPVPLE
TPTYINPINTPVQSTVGEILALGSMPPISPIKFPVLFDEHAAQHTVANSN
MPQSSLPTLDIPQLPTRNNKQPSTKSAEDTEILGLGKNKNAMVYIIFIFI
IMFIYLFK*

IP13349.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:05:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG2861-PC 808 CG2861-PC 1..808 1..808 4237 100 Plus
CG2861-PE 1873 CG2861-PE 98..889 1..792 4157 100 Plus
CG2861-PD 1873 CG2861-PD 98..889 1..792 4157 100 Plus
CG2861-PA 1893 CG2861-PA 98..889 1..792 4157 100 Plus
CG12723-PA 625 CG12723-PA 269..505 497..730 277 31.5 Plus
BOD1-PC 1109 CG5514-PC 335..543 501..713 208 33.5 Plus
BOD1-PA 1109 CG5514-PA 335..543 501..713 208 33.5 Plus
BOD1-PD 1150 CG5514-PD 335..543 501..713 208 33.5 Plus
BOD1-PB 1150 CG5514-PB 335..543 501..713 208 33.5 Plus
BOD1-PE 1151 CG5514-PE 335..543 501..713 208 33.5 Plus
nahoda-PC 1148 CG12781-PC 279..514 481..702 205 28 Plus
nahoda-PB 1335 CG12781-PB 279..514 481..702 205 28 Plus
nahoda-PA 1335 CG12781-PA 279..514 481..702 205 28 Plus
CG12723-PA 625 CG12723-PA 290..603 410..753 204 24 Plus
nahoda-PC 1148 CG12781-PC 359..538 520..702 188 29 Plus
nahoda-PB 1335 CG12781-PB 359..538 520..702 188 29 Plus
nahoda-PA 1335 CG12781-PA 359..538 520..702 188 29 Plus
BOD1-PC 1109 CG5514-PC 342..562 554..786 185 28 Plus
BOD1-PA 1109 CG5514-PA 342..562 554..786 185 28 Plus
BOD1-PD 1150 CG5514-PD 342..562 554..786 185 28 Plus
BOD1-PB 1150 CG5514-PB 342..562 554..786 185 28 Plus
BOD1-PE 1151 CG5514-PE 342..562 554..786 185 28 Plus
CG13731-PB 792 CG13731-PB 36..306 537..774 183 26.3 Plus
Mur89F-PC 2158 CG4090-PC 1105..1806 26..768 183 19.9 Plus
Mur89F-PB 2159 CG4090-PB 1105..1806 26..768 183 19.9 Plus
nahoda-PC 1148 CG12781-PC 383..546 520..683 181 28.7 Plus
nahoda-PB 1335 CG12781-PB 383..546 520..683 181 28.7 Plus
nahoda-PA 1335 CG12781-PA 383..546 520..683 181 28.7 Plus
CG13722-PB 708 CG13722-PB 289..525 497..711 176 29.8 Plus
RAF2-PC 1117 CG4877-PC 302..720 383..786 175 24.4 Plus
RAF2-PA 1117 CG4877-PA 302..720 383..786 175 24.4 Plus
RAF2-PB 1117 CG4877-PB 302..720 383..786 175 24.4 Plus
CG15021-PA 420 CG15021-PA 48..344 398..704 174 26.5 Plus
CG15021-PA 420 CG15021-PA 35..229 535..711 172 31.7 Plus
Muc55B-PB 485 CG5765-PB 250..437 539..730 172 30.5 Plus
Muc55B-PA 485 CG5765-PA 250..437 539..730 172 30.5 Plus
CG11835-PD 795 CG11835-PD 198..674 367..772 172 23 Plus
CG11835-PC 795 CG11835-PC 198..674 367..772 172 23 Plus
CG11835-PB 795 CG11835-PB 198..674 367..772 172 23 Plus
CG11835-PA 795 CG11835-PA 198..674 367..772 172 23 Plus
CG15021-PA 420 CG15021-PA 50..307 490..730 167 26.2 Plus
frm-PD 268 CG10625-PD 117..262 563..713 160 33.8 Plus
frm-PA 268 CG10625-PA 117..262 563..713 160 33.8 Plus
frm-PE 652 CG10625-PE 501..646 563..713 160 33.8 Plus
frm-PB 682 CG10625-PB 531..676 563..713 160 33.8 Plus
frm-PC 682 CG10625-PC 531..676 563..713 160 33.8 Plus
CG11345-PA 242 CG11345-PA 47..220 558..707 155 33.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 11:47:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17403-PA 212 GM17403-PA 32..210 622..798 455 62 Plus
Dsec\GM17402-PA 172 GM17402-PA 1..127 176..304 418 68.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 11:47:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16830-PA 340 GE16830-PA 73..262 571..753 458 59.1 Plus

IP13349.hyp Sequence

Translation from 375 to 2801

> IP13349.hyp
MPDMMPMANSFNPLININQEAGVVINTGINSIDNGLPSTYSEHISQPTNT
ESTRNMNSSIFDIPSDLDNNSSNESGDEVTQPTAKQSKINANFVCKIESD
TNMDKLPTTSNNTNDKPPNNTDSDSDIISISDLIEDLNLDFNQLPITSCD
VETHPADTQSNIDANLPYDLISAINMDFVNPANRTYMSAANSTRGTAYKI
RKPRTVKRIIKAPSKSNIGKLLREAAKKENAAAGTQRPKKATSTITSSVQ
NFPNPNNWPACPFPMQNGTMPADEPNDLMPTVSQSLTVPAAQNRPIQTIG
KIIKPPVKRTYTKRANKTNNTNIPNKNSTGVIQSNGVAPTIRQGLVEPGG
TNILMPWNRQIPMVSVAENPRVQTIDKIIVPPPKRTYKKRVNKTVNTNQS
SESAVGDGAPSAPIQSIPKVRKPRGPGKKTAKMVPGQESQQDIPLGVPPN
GEAPQTSSQAPVPRVKRAYRKRANNTNNTNILNVNSTGVMESNGGGPTIP
NSQQIPNVAVVLNLPIQPIKPKAPRKPRAKKVCNQQPGTDIPFGVSAQGQ
TAQIKPKPKPRAPRVPKEPKAPKEPKAPKVPKAPRVPKAPRVPKAPRVPK
APRVPKPPKEPKPPKEPKPPKQPKAPRVPKEPKPPKVPKEPKAPRAPRAP
RVPKAPKEPKVPKIPKNPRVPKAPRQPKASMNKIQNTVKVPLPIEPVPLE
TPTYINPINTPVQSTVGEILALGSMPPISPIKFPVLFDEHAAQHTVANSN
MPQSSLPTLDIPQLPTRNNKQPSTKSAEDTEILGLGKNKNAMVYIIFIFI
IMFIYLFK*

IP13349.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:58:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG2861-PC 808 CG2861-PC 1..808 1..808 4237 100 Plus
CG2861-PE 1873 CG2861-PE 98..889 1..792 4157 100 Plus
CG2861-PD 1873 CG2861-PD 98..889 1..792 4157 100 Plus
CG2861-PA 1893 CG2861-PA 98..889 1..792 4157 100 Plus
CG12723-PA 625 CG12723-PA 269..505 497..730 277 31.5 Plus