Clone IP13472 Report

Search the DGRC for IP13472

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:134
Well:72
Vector:pOT2
Associated Gene/TranscriptCG31413-RA
Protein status:IP13472.pep: gold
Preliminary Size:1686
Sequenced Size:1800

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31413 2005-01-01 Successful iPCR screen
CG31413 2008-04-29 Release 5.5 accounting
CG31413 2008-08-15 Release 5.9 accounting
CG31413 2008-12-18 5.12 accounting

Clone Sequence Records

IP13472.complete Sequence

1800 bp (1800 high quality bases) assembled on 2006-01-20

GenBank Submission: BT024290

> IP13472.complete
ACCAGTCGCATAACGTATATCTTTTTGTAATGAATCCAAACGATACTTTA
TCAGCCTTCTCACTTCTCTTGTGCGTCCTGATTCTTTCCGCTGGACGCGG
CGAATTACTTTTTAATGCGGATGACAATGTGGTGCAGCTGGATTTTGCAT
CATTCGAGTCCGGACTTAGTGAACCAACGTCTGGGAAACTGGTGCAGTTC
TTTAACGGATTCTGCGAGGAGAGCCAGAACTTTATACCAGCGTTTAAGAA
TCTATCTCGTAAACTTTACAAGTGGCACCGATTACTCAAAGTCCATGTAC
TAGATTGTGGAAAGGATGAGAACGATATGATATGTAGCATTTACAGCATT
CGTAAAACGCCAACTCTGCGATATTTTCCACCGAGTTATAAGCTAGCACC
AGACAACCTGGGTACCGAGATCACTCATCGAAATCCCAAAGAGATACAAT
CGAAGCTGGCCCTAAATCTTCAAAAGCTTGATTACTTCAAAATGTTTAAG
CGGCAGGACAATGTGGCTCATATATTTCAAACGCACAAGGATATCGAGTA
CGTTGCTTTTGTTTTCCAAATGTGTTTAGACCACTTTCTGCCGCACTTGG
AAACGGGCAACTCGATGGAGGAAAAGTATGCCTCTCAGGGCGATTGCAAT
GAGGATAATCCAATAGTTTCGTTGATCGGAAGAAATACCCTTCTTGAATT
GCTGCCCTACAGGAAAGTGGTTGTGCGGATCTTCGACAATCATGATGTTT
ACAACAAATTTGGCATATCGCCCGTACCCAACTTAGTGGTTCTGGTAAAT
AAAGCTGGAAAACTGCTATTTCTCACACCCGAGATGGATAGCAGTAAGGC
TTATGTGGCTGCCATTAAGCAATTCTTGATCTTTGTCGACCTTAAGCCCC
AGAAACCGTTGCCAAAAACCCCACCCGCCAACATAAGTGAAGCCTTAAGG
TATGAGATATTCGAGCAGCACAAGCATCATCCCTCTCGGATCTATCGAGC
CGATCTGGAACGGGCTATCGATCAAATCCTTAATGTAAAGTTCCCAGGAA
CTACGCACTTTGCCGGAGCAAAGATAGTTGTTCTGCGAAATTTCGTTAAA
CTGATATACAACTCAAGTCCCTTGAAGCCAGAGGCGCGGGAAAAGCTGGC
AAACCTCTATTATTCCCTGCACGTGAAAAAGCAACTTTCCGGAGTGGGAT
TCAAAAATTTGCTGCTAAAATCAGTAAAGGATTACGTGTTTGATGGAAAG
CAATATGTTGGTTGTATTGCCTCTCGTCCTTCGTTGCGCGGCTTTAATTG
CTCCCTTTGGGTTCTATTCCATTATCTTAGTGTGGAGTCGAAAAAGCTTA
AGCCCAAATCCGTGTTGTTAGTATTTCTCGGATATGTACGATTCTTTATG
AACTGCAAGGAGTGTGATATGAAAATAAGCGAGTTCAAAAAGCTCCGACC
AATTGCAAATGTGACCAATGATGATGAACAGATTTTGTGGCTCTGGGAAG
CGCATAATTATGTCAACAAACAGTTGGCCGGCGATTCTACAGAGGATCCG
AAATTCCCAAAGATTCAGTTTCCAAGCGAAAGAGATTGTCCCAAGTGTAG
AAACAACGCGACCGAATGGCGCACCGAAGAAGTATTGCACTATCTGAAAG
GCATATATACCTTAAAAAACCTTAGTTGGTTCGGAATGTCATCCGGAAAA
CATGCAATTGAATAAAGAAAAATGTAACTTTGTAATATTTACGATTAAAA
AAAATGGTTAATAAATGGTTATAGATAGTTTCAAAAAAAAAAAAAAAAAA

IP13472.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:21:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG31413-RA 1783 CG31413-RA 1..1783 1..1783 8915 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:17:13
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 19526164..19527945 1..1782 8760 99.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:20:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:17:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23702761..23704543 1..1783 8915 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:13:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 23443592..23445374 1..1783 8915 100 Plus
Blast to na_te.dros performed 2019-03-16 15:17:12
Subject Length Description Subject Range Query Range Score Percent Strand
hobo 2959 hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). 2027..2105 530..453 113 63.7 Minus

IP13472.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:18:00 Download gff for IP13472.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 19526164..19527945 1..1782 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:55:09 Download gff for IP13472.complete
Subject Subject Range Query Range Percent Splice Strand
CG31413-RA 1..1686 30..1715 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:37:01 Download gff for IP13472.complete
Subject Subject Range Query Range Percent Splice Strand
CG31413-RA 1..1686 30..1715 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:42:21 Download gff for IP13472.complete
Subject Subject Range Query Range Percent Splice Strand
CG31413-RA 1..1686 30..1715 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:11:49 Download gff for IP13472.complete
Subject Subject Range Query Range Percent Splice Strand
CG31413-RA 1..1686 30..1715 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:43:19 Download gff for IP13472.complete
Subject Subject Range Query Range Percent Splice Strand
CG31413-RA 1..1686 30..1715 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:08:47 Download gff for IP13472.complete
Subject Subject Range Query Range Percent Splice Strand
CG31413-RA 1..1782 1..1782 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:37:00 Download gff for IP13472.complete
Subject Subject Range Query Range Percent Splice Strand
CG31413-RA 1..1782 1..1782 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:42:21 Download gff for IP13472.complete
Subject Subject Range Query Range Percent Splice Strand
CG31413-RA 1..1782 1..1782 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:11:49 Download gff for IP13472.complete
Subject Subject Range Query Range Percent Splice Strand
CG31413-RA 1..1782 1..1782 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:43:19 Download gff for IP13472.complete
Subject Subject Range Query Range Percent Splice Strand
CG31413-RA 1..1782 1..1782 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:18:00 Download gff for IP13472.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23702761..23704542 1..1782 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:18:00 Download gff for IP13472.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23702761..23704542 1..1782 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:18:00 Download gff for IP13472.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23702761..23704542 1..1782 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:42:21 Download gff for IP13472.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19528483..19530264 1..1782 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:00:21 Download gff for IP13472.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23443592..23445373 1..1782 100   Plus

IP13472.hyp Sequence

Translation from 2 to 1714

> IP13472.hyp
QSHNVYLFVMNPNDTLSAFSLLLCVLILSAGRGELLFNADDNVVQLDFAS
FESGLSEPTSGKLVQFFNGFCEESQNFIPAFKNLSRKLYKWHRLLKVHVL
DCGKDENDMICSIYSIRKTPTLRYFPPSYKLAPDNLGTEITHRNPKEIQS
KLALNLQKLDYFKMFKRQDNVAHIFQTHKDIEYVAFVFQMCLDHFLPHLE
TGNSMEEKYASQGDCNEDNPIVSLIGRNTLLELLPYRKVVVRIFDNHDVY
NKFGISPVPNLVVLVNKAGKLLFLTPEMDSSKAYVAAIKQFLIFVDLKPQ
KPLPKTPPANISEALRYEIFEQHKHHPSRIYRADLERAIDQILNVKFPGT
THFAGAKIVVLRNFVKLIYNSSPLKPEAREKLANLYYSLHVKKQLSGVGF
KNLLLKSVKDYVFDGKQYVGCIASRPSLRGFNCSLWVLFHYLSVESKKLK
PKSVLLVFLGYVRFFMNCKECDMKISEFKKLRPIANVTNDDEQILWLWEA
HNYVNKQLAGDSTEDPKFPKIQFPSERDCPKCRNNATEWRTEEVLHYLKG
IYTLKNLSWFGMSSGKHAIE*

IP13472.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:58:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG31413-PA 561 CG31413-PA 1..561 10..570 2967 100 Plus
CG17843-PA 552 CG17843-PA 7..545 20..562 970 37.9 Plus
CG6690-PA 562 CG6690-PA 35..540 36..558 803 34 Plus
CG4670-PB 637 CG4670-PB 44..570 36..562 625 28.2 Plus
CG4670-PA 637 CG4670-PA 44..570 36..562 625 28.2 Plus

IP13472.pep Sequence

Translation from 29 to 1714

> IP13472.pep
MNPNDTLSAFSLLLCVLILSAGRGELLFNADDNVVQLDFASFESGLSEPT
SGKLVQFFNGFCEESQNFIPAFKNLSRKLYKWHRLLKVHVLDCGKDENDM
ICSIYSIRKTPTLRYFPPSYKLAPDNLGTEITHRNPKEIQSKLALNLQKL
DYFKMFKRQDNVAHIFQTHKDIEYVAFVFQMCLDHFLPHLETGNSMEEKY
ASQGDCNEDNPIVSLIGRNTLLELLPYRKVVVRIFDNHDVYNKFGISPVP
NLVVLVNKAGKLLFLTPEMDSSKAYVAAIKQFLIFVDLKPQKPLPKTPPA
NISEALRYEIFEQHKHHPSRIYRADLERAIDQILNVKFPGTTHFAGAKIV
VLRNFVKLIYNSSPLKPEAREKLANLYYSLHVKKQLSGVGFKNLLLKSVK
DYVFDGKQYVGCIASRPSLRGFNCSLWVLFHYLSVESKKLKPKSVLLVFL
GYVRFFMNCKECDMKISEFKKLRPIANVTNDDEQILWLWEAHNYVNKQLA
GDSTEDPKFPKIQFPSERDCPKCRNNATEWRTEEVLHYLKGIYTLKNLSW
FGMSSGKHAIE*

IP13472.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 13:20:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18057-PA 540 GF18057-PA 4..537 12..557 1007 38.7 Plus
Dana\GF18056-PA 776 GF18056-PA 296..768 64..555 742 34.1 Plus
Dana\GF11199-PA 636 GF11199-PA 46..569 27..553 714 30.5 Plus
Dana\GF18055-PA 561 GF18055-PA 58..556 37..555 636 30.8 Plus
Dana\GF18058-PA 778 GF18058-PA 420..777 212..553 500 37.3 Plus
Dana\GF18058-PA 778 GF18058-PA 15..372 11..339 390 29.9 Plus
Dana\GF18056-PA 776 GF18056-PA 8..256 309..549 383 34.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 13:20:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11219-PA 560 GG11219-PA 1..553 1..557 2457 80.3 Plus
Dere\GG11096-PA 553 GG11096-PA 35..548 27..555 990 37.5 Plus
Dere\GG11095-PA 564 GG11095-PA 49..551 41..556 793 34.9 Plus
Dere\GG22509-PA 635 GG22509-PA 44..568 27..553 660 30.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 13:20:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20920-PA 559 GH20920-PA 31..554 27..555 802 35.1 Plus
Dgri\GH20280-PA 643 GH20280-PA 47..575 27..553 721 31.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:42:34
Subject Length Description Subject Range Query Range Score Percent Strand
Qsox4-PA 561 CG31413-PA 1..561 1..561 2967 100 Plus
Qsox2-PA 552 CG17843-PA 7..545 11..553 970 37.9 Plus
Qsox3-PA 562 CG6690-PA 35..540 27..549 803 34 Plus
Qsox1-PB 637 CG4670-PB 44..570 27..553 625 28.2 Plus
Qsox1-PA 637 CG4670-PA 44..570 27..553 625 28.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 13:20:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10722-PA 545 GI10722-PA 23..541 27..556 808 34.3 Plus
Dmoj\GI19451-PA 646 GI19451-PA 48..582 27..557 735 30.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 13:20:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20935-PA 542 GL20935-PA 28..538 27..552 925 37.9 Plus
Dper\GL23804-PA 554 GL23804-PA 39..551 27..557 901 37.5 Plus
Dper\GL10907-PA 638 GL10907-PA 44..571 27..553 712 30.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 13:20:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27058-PA 559 GA27058-PA 38..556 27..557 976 38.5 Plus
Dpse\GA28634-PA 548 GA28634-PA 2..544 1..552 936 36.5 Plus
Dpse\GA18343-PA 638 GA18343-PA 44..571 27..553 712 30.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 13:20:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26521-PA 561 GM26521-PA 1..561 1..561 2826 93 Plus
Dsec\GM26712-PA 561 GM26712-PA 1..561 1..561 2826 93 Plus
Dsec\GM26387-PA 564 GM26387-PA 35..541 27..549 818 35.2 Plus
Dsec\GM20295-PA 636 GM20295-PA 44..569 27..553 639 28 Plus
Dsec\GM26388-PA 174 GM26388-PA 35..151 27..144 272 44.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 13:20:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21029-PA 561 GD21029-PA 1..561 1..561 2826 93.2 Plus
Dsim\GD20911-PA 552 GD20911-PA 35..547 27..555 1004 38.6 Plus
Dsim\GD20910-PA 564 GD20910-PA 35..541 27..549 826 35 Plus
Dsim\GD25776-PA 636 GD25776-PA 44..569 27..553 654 28.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 13:20:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23137-PA 548 GJ23137-PA 4..544 10..556 893 37.3 Plus
Dvir\GJ21201-PA 646 GJ21201-PA 49..578 27..553 736 32.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 13:20:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14087-PA 645 GK14087-PA 45..577 27..553 700 30.6 Plus
Dwil\GK14235-PA 232 GK14235-PA 1..212 17..246 290 29.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 13:20:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10385-PA 571 GE10385-PA 1..553 1..557 2425 79.7 Plus
Dyak\GE10256-PA 554 GE10256-PA 36..549 27..555 1004 38.1 Plus
Dyak\GE10255-PA 558 GE10255-PA 35..546 27..553 821 34.5 Plus
Dyak\GE13379-PA 636 GE13379-PA 44..569 27..553 654 29.9 Plus