Clone IP13529 Report

Search the DGRC for IP13529

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:135
Well:29
Vector:pOT2
Associated Gene/TranscriptCG17078-RB
Protein status:IP13529.pep: gold
Preliminary Size:1818
Sequenced Size:2126

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17078 2005-01-01 Successful iPCR screen
CG17078 2008-04-29 Picked prior to 5.5
CG17078 2008-05-05 Release 5.5 accounting
CG17078 2008-12-18 5.12 accounting

Clone Sequence Records

IP13529.complete Sequence

2126 bp assembled on 2008-08-25

GenBank Submission: BT044459.1

> IP13529.complete
ATTTCACGGCACGGTCCAAAAACACGGATAACAGGGCTTGGTTGGAGTCG
CGCAAACGCAAATAGAAGCCATGGACGTTGCCCCCGCACCGCCCGCCAGT
TCCGGCGGCGATCATAGCACCCAGCAGGCGCCGATCAGTCCGAATCAAAA
TGCAAACCAAGCGCCGGTCGCACTCGCAAAGGCAACAACAATCGAAAATG
GTGTACAAACAGGAGGAGCGAAAAAGCCAGAGAGCTGCGGTGAGAAAGCC
CCCGCCGTAGAGCCGACACATTCCACTGATGCTAGCCAGAAGGACGACGA
CGAGGGCAAGCCGAAGACCGAGCTGGCTGACAAAGTATTGATTACCATAT
GCAGCGCCGATCGCAAGATCAAGAAGACCTTCATGTCGTTGCCCACTCGA
AAGGATGTAATCGACAAAGCTCACAAATACGGCCTGTGCGGCAACACAAT
TGTCCTGGAGAGCAACGGCTGCGAGATCTGCGAGGACGACGTGCTCTTGT
TCGCTGCCAAGGAGAAGATTCTGTTGATGCTCCTCGCCGAGTCGGAGGAG
TATGTGGTGCTTCCTCCGCCATCGCCCCTCAACCGATCCGAACGCGCCGG
CAGCTCGGTGGATCCCAGCTTCTATGCCAACAACAGTATTGTGTCGAACC
CGAACGATTCGACGGTCTCTAATGACGAAACCATGTCACTGTCCAGCGTA
ACGCCATCAAGTGCAAAGAGTTCTGCTCTATTCAAGGAGTTCTCGATACC
CTGGAGCAAGGTGCCTGGGGACATAATGAAACTACTAAAGGGAAAGGGGA
GTTTGGGCAAGCGGTTGAATACACTTGCGAATGTTTTGGTGGAGGCTCTC
CGTGAAATATCCGCCCACATTCCCATACGGATTTTCCGGCAGGTCGCCCA
ACAGGCGGCTGAAAAGTACCCCGACTCCTTACTCGAAAAAGACCGCGAGG
GACAGTTTATAGCCACCACTCCGCAATCGCTCATATCCAAGATGATCAAC
CGTAACAATGCCCTAAACAAACCCCAGAAACGCGGCAGCTCGGGAACCTT
TGAGATCCACATCCCTAATAAAAAACGAAAATTCGGAGGTGGTGCTTCCA
ATGGTGATGCAAAATCGCTGGCTCTTAACAGGGATCTGGAGCACAAAAAG
GAGTTACTAATCTCCAGCTACCGAGGCAGTTCCCCACTGGAACAGTCCGT
CATAATCGAATATATGAAAGAGTGCTTTCCGTTGCAGCGCTCCTTTTTTA
ATAACAGCGAAAAGATCCCAGATATAACGGCCATTAAGGACAATTGGCCA
TATATTTTTGACAAGGCTGTGCTGTACCAGCACTTTGAGCTGCTTATGTC
CATCGATCCCCGGGCTCTAGAGAAGCGCTTGGCTACCGAAAAGGATCGCT
TTTTCAGGTTCTTTAAGAGTTCAAAGAACAAGAAGATCAGCTCTTTGGAC
GAGACCAACGCTAATTTCCTGCGTGGCATAGCGTACTATTTTAATGAGGA
TCCCGACTACATTTTCAAGCACCTCGAGAACAGTTCCCTTAGCAAGGAAT
CACTGCAAAGCACGAATCCCACAAACGCCCCCTGGGTGGCTCTAGTCAAT
TCACCCATAACAACGGCCGACGGCGTGGAATCGCAAATGGAGGCGAAGGT
CTACATTGAAGGCCAGATAATGGCCACATTCGCCGCCAAAGACGAAGACC
TGCCGGACATTCTGGCCCAGTTAATCTGCTACTACTATACCTTTAACATG
ATGTACCCTAAGGAAGCCAATCAAACACTCGAATTTATCGTCGTTTACTT
TCTGCAGCACTCGCCGGAACAAGTGCGATCGGCCAAAAAGTCTGTGACCA
CCAACGGCAAGTTTAACCACCTCATCGCCAAGCTTGCCAATGTACATGGC
TGAGATTTCATTTGGACGATTTTTGGCTGGAACCATGGCGCAGCGAGCGC
CACTTCAATCTCCTCTTGCTCCTCCCAACGGAGGAGGAGCCGAACTCTGT
TTAGTTTATTTATTTTCGCCGACCTATTCCACATGTATTTGTACCACTAT
TTTTAAGATTTGCATAAAGTGTGTAGTAATGTTGTGTATACATTTCTGAT
TTGTCACCCGAAAAAAAAAAAAAAAA

IP13529.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:07:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG17078-RB 2390 CG17078-RB 274..2388 1..2115 10560 99.9 Plus
CG17078.b 2375 CG17078.b 511..2373 253..2115 9300 99.9 Plus
CG17078.c 2331 CG17078.c 468..2329 254..2115 9295 99.9 Plus
CG17078.c 2331 CG17078.c 160..413 1..254 1270 100 Plus
CG17078.b 2375 CG17078.b 274..512 1..239 1195 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:53:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 275352..276532 1598..418 5875 99.8 Minus
chr2L 23010047 chr2L 274773..275284 2110..1599 2560 100 Minus
chr2L 23010047 chr2L 276992..277245 254..1 1270 100 Minus
chr2L 23010047 chr2L 276772..276937 419..254 830 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:20:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:53:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 275319..276499 1598..418 5905 100 Minus
2L 23513712 2L 274735..275251 2115..1599 2570 99.8 Minus
2L 23513712 2L 276959..277212 254..1 1270 100 Minus
2L 23513712 2L 276739..276904 419..254 830 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:25:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 275319..276499 1598..418 5905 100 Minus
2L 23513712 2L 274735..275251 2115..1599 2570 99.8 Minus
2L 23513712 2L 276959..277212 254..1 1270 100 Minus
2L 23513712 2L 276739..276904 419..254 830 100 Minus
Blast to na_te.dros performed 2019-03-16 01:53:47
Subject Length Description Subject Range Query Range Score Percent Strand
pogo 2121 pogo DMPOGOR11 2121bp AKA(S90749) Derived from X59837 (g8354) (Rel. 45, Last updated, Version 10). 1835..1918 1997..2080 123 60.7 Plus

IP13529.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:54:39 Download gff for IP13529.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 274773..275284 1599..2110 100 <- Minus
chr2L 275352..276530 420..1598 99 <- Minus
chr2L 276772..276936 255..419 100 <- Minus
chr2L 276992..277245 1..254 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:55:16 Download gff for IP13529.complete
Subject Subject Range Query Range Percent Splice Strand
CG17078-RA 1..158 71..228 100 == Plus
CG17078-RA 159..1818 243..1903 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:11:18 Download gff for IP13529.complete
Subject Subject Range Query Range Percent Splice Strand
CG17078-RB 1..1833 71..1903 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:11:09 Download gff for IP13529.complete
Subject Subject Range Query Range Percent Splice Strand
CG17078-RB 1..1833 71..1903 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:50:06 Download gff for IP13529.complete
Subject Subject Range Query Range Percent Splice Strand
CG17078-RB 1..1833 71..1903 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:08:19 Download gff for IP13529.complete
Subject Subject Range Query Range Percent Splice Strand
CG17078-RA 1..158 71..228 100 == Plus
CG17078-RA 159..1818 243..1903 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:11:17 Download gff for IP13529.complete
Subject Subject Range Query Range Percent Splice Strand
CG17078-RB 1..2110 1..2110 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:11:09 Download gff for IP13529.complete
Subject Subject Range Query Range Percent Splice Strand
CG17078-RB 1..2110 1..2110 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-25 10:59:21 Download gff for IP13529.complete
Subject Subject Range Query Range Percent Splice Strand
CG17078-RA 1..158 71..228 100 == Plus
CG17078-RA 159..1818 243..1903 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:50:06 Download gff for IP13529.complete
Subject Subject Range Query Range Percent Splice Strand
CG17078-RB 1..2110 1..2110 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:54:39 Download gff for IP13529.complete
Subject Subject Range Query Range Percent Splice Strand
2L 274740..275251 1599..2110 100 <- Minus
2L 275319..276497 420..1598 100 <- Minus
2L 276739..276903 255..419 100 <- Minus
2L 276959..277212 1..254 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:54:39 Download gff for IP13529.complete
Subject Subject Range Query Range Percent Splice Strand
2L 274740..275251 1599..2110 100 <- Minus
2L 275319..276497 420..1598 100 <- Minus
2L 276739..276903 255..419 100 <- Minus
2L 276959..277212 1..254 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:54:39 Download gff for IP13529.complete
Subject Subject Range Query Range Percent Splice Strand
2L 274740..275251 1599..2110 100 <- Minus
2L 275319..276497 420..1598 100 <- Minus
2L 276739..276903 255..419 100 <- Minus
2L 276959..277212 1..254 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:11:09 Download gff for IP13529.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 274740..275251 1599..2110 100 <- Minus
arm_2L 275319..276497 420..1598 100 <- Minus
arm_2L 276739..276903 255..419 100 <- Minus
arm_2L 276959..277212 1..254 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:41:32 Download gff for IP13529.complete
Subject Subject Range Query Range Percent Splice Strand
2L 276739..276903 255..419 100 <- Minus
2L 276959..277212 1..254 100   Minus
2L 274740..275251 1599..2110 100 <- Minus
2L 275319..276497 420..1598 100 <- Minus

IP13529.pep Sequence

Translation from 70 to 1902

> IP13529.pep
MDVAPAPPASSGGDHSTQQAPISPNQNANQAPVALAKATTIENGVQTGGA
KKPESCGEKAPAVEPTHSTDASQKDDDEGKPKTELADKVLITICSADRKI
KKTFMSLPTRKDVIDKAHKYGLCGNTIVLESNGCEICEDDVLLFAAKEKI
LLMLLAESEEYVVLPPPSPLNRSERAGSSVDPSFYANNSIVSNPNDSTVS
NDETMSLSSVTPSSAKSSALFKEFSIPWSKVPGDIMKLLKGKGSLGKRLN
TLANVLVEALREISAHIPIRIFRQVAQQAAEKYPDSLLEKDREGQFIATT
PQSLISKMINRNNALNKPQKRGSSGTFEIHIPNKKRKFGGGASNGDAKSL
ALNRDLEHKKELLISSYRGSSPLEQSVIIEYMKECFPLQRSFFNNSEKIP
DITAIKDNWPYIFDKAVLYQHFELLMSIDPRALEKRLATEKDRFFRFFKS
SKNKKISSLDETNANFLRGIAYYFNEDPDYIFKHLENSSLSKESLQSTNP
TNAPWVALVNSPITTADGVESQMEAKVYIEGQIMATFAAKDEDLPDILAQ
LICYYYTFNMMYPKEANQTLEFIVVYFLQHSPEQVRSAKKSVTTNGKFNH
LIAKLANVHG*

IP13529.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 12:25:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22851-PA 605 GF22851-PA 1..603 1..610 2514 78.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 12:25:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24666-PA 604 GG24666-PA 1..604 1..610 3074 94.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 12:25:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10221-PA 608 GH10221-PA 32..604 42..607 2142 70.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:07:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG17078-PE 610 CG17078-PE 1..610 1..610 3128 100 Plus
CG17078-PB 610 CG17078-PB 1..610 1..610 3128 100 Plus
CG17078-PC 608 CG17078-PC 1..608 1..610 3107 99.7 Plus
CG17078-PD 605 CG17078-PD 1..605 1..610 3085 99.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 12:25:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15049-PA 599 GI15049-PA 31..599 42..610 2190 72.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 12:25:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25828-PA 594 GL25828-PA 18..594 40..610 2351 76.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 12:25:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14313-PA 594 GA14313-PA 18..594 40..610 2360 76.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 12:25:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16684-PA 605 GM16684-PA 1..605 1..610 3122 96.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 12:25:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22972-PA 606 GD22972-PA 1..606 1..610 3157 97.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 12:25:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17243-PA 597 GJ17243-PA 31..597 42..610 2178 73.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 12:25:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21066-PA 606 GK21066-PA 1..603 1..608 2111 67.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 12:25:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16294-PA 604 GE16294-PA 1..603 1..609 3098 95.7 Plus

IP13529.hyp Sequence

Translation from 70 to 1902

> IP13529.hyp
MDVAPAPPASSGGDHSTQQAPISPNQNANQAPVALAKATTIENGVQTGGA
KKPESCGEKAPAVEPTHSTDASQKDDDEGKPKTELADKVLITICSADRKI
KKTFMSLPTRKDVIDKAHKYGLCGNTIVLESNGCEICEDDVLLFAAKEKI
LLMLLAESEEYVVLPPPSPLNRSERAGSSVDPSFYANNSIVSNPNDSTVS
NDETMSLSSVTPSSAKSSALFKEFSIPWSKVPGDIMKLLKGKGSLGKRLN
TLANVLVEALREISAHIPIRIFRQVAQQAAEKYPDSLLEKDREGQFIATT
PQSLISKMINRNNALNKPQKRGSSGTFEIHIPNKKRKFGGGASNGDAKSL
ALNRDLEHKKELLISSYRGSSPLEQSVIIEYMKECFPLQRSFFNNSEKIP
DITAIKDNWPYIFDKAVLYQHFELLMSIDPRALEKRLATEKDRFFRFFKS
SKNKKISSLDETNANFLRGIAYYFNEDPDYIFKHLENSSLSKESLQSTNP
TNAPWVALVNSPITTADGVESQMEAKVYIEGQIMATFAAKDEDLPDILAQ
LICYYYTFNMMYPKEANQTLEFIVVYFLQHSPEQVRSAKKSVTTNGKFNH
LIAKLANVHG*

IP13529.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:59:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG17078-PE 610 CG17078-PE 1..610 1..610 3128 100 Plus
CG17078-PB 610 CG17078-PB 1..610 1..610 3128 100 Plus
CG17078-PC 608 CG17078-PC 1..608 1..610 3107 99.7 Plus
CG17078-PD 605 CG17078-PD 1..605 1..610 3085 99.2 Plus