Clone IP13628 Report

Search the DGRC for IP13628

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:136
Well:28
Vector:pOT2
Associated Gene/TranscriptCG4725-RA
Protein status:IP13628.pep: gold
Preliminary Size:2226
Sequenced Size:2284

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4725 2005-01-01 Successful iPCR screen
CG4725 2008-04-29 Stopped prior to 5.5

Clone Sequence Records

IP13628.complete Sequence

2284 bp assembled on 2009-06-15

GenBank Submission: BT088822.1

> IP13628.complete
CCAAGATGAGAGCTACCAGAAGCGCTTGGTTGGGCTTTCTGCTCGAGCTG
CTACTCCTCTTTGAAATCCAACTTTGCGATGTGACTGAAGCCCGACAAAA
CCATATGAATCGCATGCAGATGAGTGGAAACTTTCCAGACTCACGTGAGG
AGCAACTGGTGCGCCAAAAAATAGCTACAGATGTGCAAAAGTATATGAAC
CTGAGCGCCGATCCCTGTACGGATTTCTTCGAGTATGCCTGCGGTCAGTG
GGGCCGTTATCACAAGCGACAGCTTCGTCCGGATGAGTTGTCCACTGCCC
AGCAACTGATGGAGACCAAAATTTCGGAGCAACTGCAGCAGCTTCTCACC
CAGCCACTGCCGCCGCAACATCATCCGAACGGATATAGTGGAGCCAGCAT
GACGAATGTTCGAAAAGTGCGAGCCTTCTACGAATCTTGCGTCGCAGTGG
AAGCAAATGCCAGTGAGAGACGTCGTTTCCTAATGAAGATTCTCAAGGAT
AACGGAGGATTACGCAACGTTCCCAACTCCAACTGGCAGCACAATCGTCA
GTGGGTACAAACACTGGGCGAACTGAGAAGGAACTACGGATTGGACATAC
TTTTGGGTCTGGAAATCGATCTGAATCTGCAAACCATGAAGGGTAATACC
ATATACTTTGGTGAGCCCAAGCTCACCATCATTCCAGCTGAGCACTGCAA
TGCCTTGGCAACGCGAGGAGCTCAAGTGCGAGATGAGGTCTACGAGCTGG
TGCAGCAGCAGGTGACCGAGAATTTGCGCGATTGGTTTGGCATGGACACC
GGAGAGGCGGCTAGATTTGCAGGAGATATTATTCGTTTCGAGTTTGAGCT
GTGCAAACAAATGGGAGAGCAGGATATTCAGAAGCCAGAGGAGGAGTTTC
CACCCGCCATACAGGCGCAAATTTACGGCGCGCGATCGCGAACTGGTCAA
GAGCGTCTGCGGCGCCAGAAAGGAGGAATGACCCTGACCGAGCTCACCAG
CGAGATGGGAAATCACTTGGACTTTAAAATGCTGGTAGAGGTCATCCTGG
AGAGTCAGTACCCATCCCAAGTCTATCTTCGTTCTCCGGAATATGTTAAA
CATGTGGTGAGGACTGTTAAGGCCAATAACCGCATCACCGTTGGTGGCTA
CATTCTATACGTGGCCCTGAACGAACTGAATCAGCCGCCAGAGGAAGCAC
CTTCACAACGTGCCCGCCAATGCGTCCAGGTGACGCAACGTCTCTTTCCG
CAAGTTTTGGGTGAGATGTTCCAGCGCCATGTACAGCGCGATAATGCAAA
ACATGATCTGGACGCCGTTTTCAACGATGTGATCAAGGCGCTCGAGGAGC
AGTTCCACGTGGAATGGATGGACGAGAACGATCGCAGGGCGGCCAGAACC
AGACTGTCACAATATCGAGTGTCTCTGCCGGATTACCAAAGTTTGGATCT
AACCGATTTGCAGTTCCAGAAGTCAGAAGACTACTGGCGCCGTTTGGAGA
TTGCACTAAAGTATCGTTCCCATCAGCAGTTCGAAGCCCTCAGGGGCAAC
GATTTTGGTCAGGATGCAGACGGTCTGGATGCATTCGAGGTGCGAGCTGC
TCTATCCCCCCGCCAGCAAATGGTCCTGGTTGGATGGGGTCTGCTGCAGG
CTCCATACTACAATTACTACTACCCAAAGTCTTTGAAATATGCGCTATTG
GGCCATCGATTGGCCAGTGCATTGGTTCAGGCATTCGATGACGAGGGATG
GAACAATCATCCACAGGCGACGGCCCAGTGGAATGAGGTGACCATGTCTG
GTTACCGAAATGCCAGCGAATGCCAACGGGCTCAGTACAGTAGTTACTTG
TACAATGAACCTGGCGAATTTCGCAATGCCACCAGGCTAAGAGAGATTAT
AGCCGATGGCAGTGGTCTCAACTTGGCCTTCAACGCGTATCTAGCTTGGC
TGGAGCAGCAGGATCACAAGCTACGTCCACTACTGGCGAAGGAAACGCTG
TCGGAGTTAAATTTCACCAACACCCAGCTATTCTTCATATACTTCGCACA
GACGCGCTGCTGGGCAAAGGACAACCAGGATGCCATCCTGGACTCGATGC
CTCTGATGCAGCACACACCGGAGAGATGGGATGTCAATGGACCGCTCAGC
AACTCCGCGGAATTCGGACGAGAGTTCGGCTGTGCCCTGGGCACACCGAT
GAATAGTGGCGACAAGTGTTTGGTTTACTGATGATGACAAGGCGGAAATA
AAATATACTTGGAAAGTAAAAAAAAAAAAAAAAA

IP13628.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:32:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG4725-RA 2267 CG4725-RA 1..2267 1..2267 11335 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:16:25
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 18582305..18584571 2267..1 11260 99.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:20:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:16:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22758808..22761076 2269..1 11345 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:48:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 22499639..22501907 2269..1 11345 100 Minus
Blast to na_te.dros performed on 2019-03-16 05:16:24 has no hits.

IP13628.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:17:15 Download gff for IP13628.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 18582305..18584571 1..2267 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:10:34 Download gff for IP13628.complete
Subject Subject Range Query Range Percent Splice Strand
CG4725-RA 1..2226 6..2231 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:47:58 Download gff for IP13628.complete
Subject Subject Range Query Range Percent Splice Strand
CG4725-RA 1..2226 6..2231 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:17:05 Download gff for IP13628.complete
Subject Subject Range Query Range Percent Splice Strand
CG4725-RA 1..2226 6..2231 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:01:53 Download gff for IP13628.complete
Subject Subject Range Query Range Percent Splice Strand
CG4725-RA 1..2226 6..2231 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-06-15 17:52:35 Download gff for IP13628.complete
Subject Subject Range Query Range Percent Splice Strand
CG4725-RA 1..2262 6..2267 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:47:58 Download gff for IP13628.complete
Subject Subject Range Query Range Percent Splice Strand
CG4725-RA 1..2262 6..2267 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:17:05 Download gff for IP13628.complete
Subject Subject Range Query Range Percent Splice Strand
CG4725-RA 1..2262 6..2267 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:01:53 Download gff for IP13628.complete
Subject Subject Range Query Range Percent Splice Strand
CG4725-RA 1..2267 1..2267 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:17:15 Download gff for IP13628.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22758810..22761076 1..2267 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:17:15 Download gff for IP13628.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22758810..22761076 1..2267 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:17:15 Download gff for IP13628.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22758810..22761076 1..2267 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:17:05 Download gff for IP13628.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18584532..18586798 1..2267 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:23:30 Download gff for IP13628.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22499641..22501907 1..2267 100   Minus

IP13628.pep Sequence

Translation from 2 to 2230

> IP13628.pep
KMRATRSAWLGFLLELLLLFEIQLCDVTEARQNHMNRMQMSGNFPDSREE
QLVRQKIATDVQKYMNLSADPCTDFFEYACGQWGRYHKRQLRPDELSTAQ
QLMETKISEQLQQLLTQPLPPQHHPNGYSGASMTNVRKVRAFYESCVAVE
ANASERRRFLMKILKDNGGLRNVPNSNWQHNRQWVQTLGELRRNYGLDIL
LGLEIDLNLQTMKGNTIYFGEPKLTIIPAEHCNALATRGAQVRDEVYELV
QQQVTENLRDWFGMDTGEAARFAGDIIRFEFELCKQMGEQDIQKPEEEFP
PAIQAQIYGARSRTGQERLRRQKGGMTLTELTSEMGNHLDFKMLVEVILE
SQYPSQVYLRSPEYVKHVVRTVKANNRITVGGYILYVALNELNQPPEEAP
SQRARQCVQVTQRLFPQVLGEMFQRHVQRDNAKHDLDAVFNDVIKALEEQ
FHVEWMDENDRRAARTRLSQYRVSLPDYQSLDLTDLQFQKSEDYWRRLEI
ALKYRSHQQFEALRGNDFGQDADGLDAFEVRAALSPRQQMVLVGWGLLQA
PYYNYYYPKSLKYALLGHRLASALVQAFDDEGWNNHPQATAQWNEVTMSG
YRNASECQRAQYSSYLYNEPGEFRNATRLREIIADGSGLNLAFNAYLAWL
EQQDHKLRPLLAKETLSELNFTNTQLFFIYFAQTRCWAKDNQDAILDSMP
LMQHTPERWDVNGPLSNSAEFGREFGCALGTPMNSGDKCLVY*

IP13628.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:00:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18285-PA 738 GF18285-PA 1..738 2..742 2706 67.8 Plus
Dana\GF18284-PA 691 GF18284-PA 36..691 50..742 885 31.9 Plus
Dana\GF17017-PA 691 GF17017-PA 32..691 54..742 481 23 Plus
Dana\GF17991-PA 681 GF17991-PA 36..681 50..742 434 21.9 Plus
Dana\GF18283-PA 691 GF18283-PA 39..691 52..742 428 21.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:00:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12482-PA 741 GG12482-PA 1..741 2..742 3902 96.6 Plus
Dere\GG12481-PA 696 GG12481-PA 39..696 48..742 898 33.1 Plus
Dere\GG11623-PA 699 GG11623-PA 35..699 50..742 553 25 Plus
Dere\GG11622-PA 699 GG11622-PA 36..699 51..742 527 24.6 Plus
Dere\GG11619-PA 683 GG11619-PA 36..682 46..742 497 24.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:00:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18334-PA 743 GH18334-PA 3..743 26..742 2544 62.6 Plus
Dgri\GH18323-PA 697 GH18323-PA 40..697 53..742 869 32.7 Plus
Dgri\GH13212-PA 692 GH13212-PA 29..692 50..742 539 25.2 Plus
Dgri\GH13201-PA 693 GH13201-PA 13..693 11..742 507 23.5 Plus
Dgri\GH18312-PA 682 GH18312-PA 31..682 52..742 459 22.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:37:16
Subject Length Description Subject Range Query Range Score Percent Strand
Nepl13-PA 741 CG4725-PA 1..741 2..742 3915 100 Plus
Nepl14-PA 696 CG4723-PA 39..696 48..742 936 32.1 Plus
Nepl21-PC 707 CG14526-PC 44..707 50..742 563 24.6 Plus
Nepl18-PA 682 CG14528-PA 36..682 46..742 512 24 Plus
Nepl20-PA 700 CG14527-PA 37..700 50..742 504 23.5 Plus
Nepl15-PA 686 CG4721-PA 36..686 52..742 451 21.8 Plus
Nep4-PC 978 CG4058-PC 367..978 123..742 414 24.2 Plus
Nep4-PB 978 CG4058-PB 367..978 123..742 414 24.2 Plus
Nep4-PA 1040 CG4058-PA 429..1040 123..742 414 24.2 Plus
Nepl19-PA 671 CG14523-PA 54..666 50..742 410 23.2 Plus
Nep1-PD 849 CG5905-PD 160..849 39..742 406 24.3 Plus
Nep1-PC 849 CG5905-PC 160..849 39..742 406 24.3 Plus
Nep1-PA 849 CG5905-PA 160..849 39..742 406 24.3 Plus
Nep1-PB 849 CG5905-PB 160..849 39..742 406 24.3 Plus
Nepl17-PA 681 CG14529-PA 36..681 50..742 377 21.8 Plus
Nep3-PC 786 CG9565-PC 112..786 58..742 372 23.3 Plus
Nep3-PB 786 CG9565-PB 112..786 58..742 372 23.3 Plus
Nep3-PA 786 CG9565-PA 112..786 58..742 372 23.3 Plus
Nepl7-PB 669 CG15485-PB 48..669 65..742 339 23.3 Plus
Nepl7-PA 669 CG15485-PA 48..669 65..742 339 23.3 Plus
Nep7-PA 717 CG5527-PA 58..708 61..734 298 22 Plus
Nep2-PC 763 CG9761-PC 420..763 403..742 254 24.7 Plus
Nep2-PA 763 CG9761-PA 420..763 403..742 254 24.7 Plus
Nep2-PB 774 CG9761-PB 420..774 403..742 247 24.3 Plus
Nepl12-PA 702 CG8358-PA 319..697 372..738 214 23.3 Plus
Nep5-PD 882 CG6265-PD 685..882 541..742 210 32.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:00:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10778-PA 764 GI10778-PA 65..764 46..742 2531 66.1 Plus
Dmoj\GI10777-PA 694 GI10777-PA 40..694 50..742 1002 35 Plus
Dmoj\GI22369-PA 700 GI22369-PA 29..700 41..742 577 25.9 Plus
Dmoj\GI22368-PA 688 GI22368-PA 11..688 16..742 507 23.6 Plus
Dmoj\GI22367-PA 692 GI22367-PA 37..692 40..742 468 25.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:00:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23773-PA 766 GL23773-PA 26..766 31..742 2783 71.9 Plus
Dper\GL23772-PA 692 GL23772-PA 40..692 50..742 970 34 Plus
Dper\GL24195-PA 709 GL24195-PA 35..709 39..742 491 24.6 Plus
Dper\GL23771-PA 685 GL23771-PA 24..685 44..742 461 22.3 Plus
Dper\GL27139-PA 1049 GL27139-PA 453..1049 138..742 406 25.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:00:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18387-PA 765 GA18387-PA 26..765 31..742 2790 72.1 Plus
Dpse\GA18386-PA 691 GA18386-PA 40..691 50..742 957 33.6 Plus
Dpse\GA13054-PA 709 GA13054-PA 35..709 39..742 491 24.6 Plus
Dpse\GA26947-PA 666 GA26947-PA 20..666 50..742 460 23.8 Plus
Dpse\GA18384-PA 682 GA18384-PA 21..682 44..742 457 22.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:00:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23613-PA 419 GM23613-PA 1..407 2..408 2150 97.5 Plus
Dsec\GM23614-PA 321 GM23614-PA 1..321 422..742 1731 99.4 Plus
Dsec\GM23612-PA 696 GM23612-PA 41..696 50..742 898 33.2 Plus
Dsec\GM12744-PA 698 GM12744-PA 35..698 50..742 526 24.2 Plus
Dsec\GM12743-PA 700 GM12743-PA 37..700 50..742 499 23.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:00:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18423-PA 741 GD18423-PA 1..741 2..742 3968 98.9 Plus
Dsim\GD18422-PA 696 GD18422-PA 41..696 50..742 899 33.2 Plus
Dsim\GD21387-PA 685 GD21387-PA 20..685 50..742 514 24.5 Plus
Dsim\GD18421-PA 686 GD18421-PA 36..686 52..742 447 23.2 Plus
Dsim\GD21385-PA 598 GD21385-PA 31..598 137..742 417 24.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:00:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14377-PA 725 GJ14377-PA 15..725 40..742 2674 68.3 Plus
Dvir\GJ14376-PA 689 GJ14376-PA 37..689 50..742 905 33 Plus
Dvir\GJ24402-PA 670 GJ24402-PA 26..670 50..742 552 25.3 Plus
Dvir\GJ24403-PA 710 GJ24403-PA 46..710 50..742 531 26.2 Plus
Dvir\GJ14375-PA 685 GJ14375-PA 34..685 52..742 481 23 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:00:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11621-PA 747 GK11621-PA 1..747 2..742 2541 62.5 Plus
Dwil\GK11620-PA 684 GK11620-PA 33..684 50..742 924 33 Plus
Dwil\GK22544-PA 686 GK22544-PA 30..686 58..742 520 24.7 Plus
Dwil\GK11619-PA 688 GK11619-PA 25..688 44..742 492 22.1 Plus
Dwil\GK22543-PA 681 GK22543-PA 1..681 17..742 492 23.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:00:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24005-PA 741 GE24005-PA 1..741 2..742 3772 95 Plus
Dyak\GE24004-PA 696 GE24004-PA 41..696 50..742 920 33.7 Plus
Dyak\GE23808-PA 1025 GE23808-PA 362..1025 51..742 544 23 Plus
Dyak\GE19949-PA 697 GE19949-PA 35..697 50..742 514 24.3 Plus
Dyak\GE23807-PA 682 GE23807-PA 36..682 46..742 475 23.7 Plus
Dyak\GE23808-PA 1025 GE23808-PA 35..332 50..386 207 22 Plus

IP13628.hyp Sequence

Translation from 2 to 2230

> IP13628.hyp
KMRATRSAWLGFLLELLLLFEIQLCDVTEARQNHMNRMQMSGNFPDSREE
QLVRQKIATDVQKYMNLSADPCTDFFEYACGQWGRYHKRQLRPDELSTAQ
QLMETKISEQLQQLLTQPLPPQHHPNGYSGASMTNVRKVRAFYESCVAVE
ANASERRRFLMKILKDNGGLRNVPNSNWQHNRQWVQTLGELRRNYGLDIL
LGLEIDLNLQTMKGNTIYFGEPKLTIIPAEHCNALATRGAQVRDEVYELV
QQQVTENLRDWFGMDTGEAARFAGDIIRFEFELCKQMGEQDIQKPEEEFP
PAIQAQIYGARSRTGQERLRRQKGGMTLTELTSEMGNHLDFKMLVEVILE
SQYPSQVYLRSPEYVKHVVRTVKANNRITVGGYILYVALNELNQPPEEAP
SQRARQCVQVTQRLFPQVLGEMFQRHVQRDNAKHDLDAVFNDVIKALEEQ
FHVEWMDENDRRAARTRLSQYRVSLPDYQSLDLTDLQFQKSEDYWRRLEI
ALKYRSHQQFEALRGNDFGQDADGLDAFEVRAALSPRQQMVLVGWGLLQA
PYYNYYYPKSLKYALLGHRLASALVQAFDDEGWNNHPQATAQWNEVTMSG
YRNASECQRAQYSSYLYNEPGEFRNATRLREIIADGSGLNLAFNAYLAWL
EQQDHKLRPLLAKETLSELNFTNTQLFFIYFAQTRCWAKDNQDAILDSMP
LMQHTPERWDVNGPLSNSAEFGREFGCALGTPMNSGDKCLVY*

IP13628.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:59:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG4725-PA 741 CG4725-PA 1..741 2..742 3915 100 Plus
CG4723-PA 696 CG4723-PA 39..696 48..742 936 32.1 Plus
CG14526-PC 707 CG14526-PC 44..707 50..742 563 24.6 Plus
CG14528-PA 682 CG14528-PA 36..682 46..742 512 24 Plus
CG14527-PA 700 CG14527-PA 37..700 50..742 504 23.5 Plus