Clone IP13958 Report

Search the DGRC for IP13958

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:139
Well:58
Vector:pOT2
Associated Gene/TranscriptCG7907-RB
Protein status:IP13958.pep: gold
Preliminary Size:2244
Sequenced Size:2756

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7907 2005-01-01 Successful iPCR screen
CG7907 2008-04-29 Release 5.5 accounting
CG7907 2008-08-15 Release 5.9 accounting
CG7907 2008-12-18 5.12 accounting

Clone Sequence Records

IP13958.complete Sequence

2756 bp (2756 high quality bases) assembled on 2005-05-04

GenBank Submission: BT022776

> IP13958.complete
CTGAGTGGTTCGAATATTTCGTATTAACGAAAAATAATTTTTTCGGAAAA
GTTCGGTCAAACACATTTAAGGCAGCAGTGAAATAGCAGTGCTACAATTT
GGTTAAAAACGGTCAAATATCAAGGTGAATATCTGCCTCCGTTTTCTTTA
TACCTTTTATGCAATGCGGTAAAGGAGACATATTTATTCTTCATCGTTAT
CAGTATCTGACTTACATTTACTTTCATGAAGAACTTCTGAACCACTCTCA
ATCTTGGTTAGCTCCTTGGTCCTTTTACTCAAAACGAAGAACAAGACGAT
GGGCCGTCGTAAGCGTGAAGACTCCTCTGACGAGGAGGGAGACGACTGTC
GCCAGAAGAGGACTGCCGAGACGACGGTGAAGACCGTGGAGCAGCTGATG
AGAGAGCTTAGTTTCCCGGGGCACACTCCGCTCGAATTGAAGCTGGGGAA
CCTGGGTTACCTGCTAGGCAAAGGGATGAGTGTTGACCTGAAGGAGAACC
TCATAAATGAGCTAGTAATATGTCTGGGCTATTATCCCGGACAGGCCAGT
GCCTATGCCACACTTGTGGGCCTAATTAATGTCGCAGACTTTGAATTCGG
CTCCGAGTGCCTGTTGTTCATGGCGCACAAGGTGGGAGAGTCCGTGCACA
TTCGCGATTGGAACAGGTGCCGTGGAGTGGTTCACTGCATGGTGGATCTG
TATCACTGCCAGGTGCTCCCGTCGTCCTATATTCTAAAATTGCTCGCAGC
CTTCTTGAAGGACTGCGAGGCTCTGAAGGATCCGGACGATCTGGTGGGCG
TCACACCGCAGATACGACGCGATTTTCTTGCCTACTGTGTACTATCCGCC
ATGCCCCTTATTGGGCGCGATTTGGAGGGGGAGACGGCGTTTGATAAGCT
GATAGTCTCACTCCAGATTTACATTAAGAAGCGGTCCGCTCTGCACACCA
ACATGTTGAGTGTGTGGCCGGATTTCAATCAGAGGGACTACCTGGAGCTG
TTGTGGCAGCAGGTGGACGGTATGAGGCAGAACCATTGGGCCGAACCGGA
GCATCAGTTGATCCCCCGACCTTACAAGTCCTTCTCTGAGACCTTGAGCC
ACGGCCGAATCCACCAGCTAAGGGATTATGATTTGGCCGCCCATGAGGAG
CGATGTCGGTATCCGCTGCCGCGTGTATGTTTTCGCATCTTCTCCTGCGA
CTCTGTCGGCGAGATCCCTAATATGCCCCCGCCGGTGAGCATCGAAAGGC
ATCTGCTGGAGGCCCATATTCTGGACATACTGATCTCTTTTCATAAGGAG
AGAAAAATCTGTGCCGATAGCCTCTTGATGTACGCCGCCTCCAAGCCCCA
GTTGCCGGTCTATTACTGCATTGTGGAGGTGATCTTGGGCGAGATGCTGC
GGCTGCCCACCGCCAATTGGAGCACCATTGCCTACGGATCCATTCTGGTG
GAGCTGTGCAAGCGCCAACCGGACAAGATACCCCAGGTGGTGGCCCAGGC
CTTGGATATAATCTATAATCGACTGAACTCCATGAGCGTAGCTTGCTTCG
ACCGCCTGGTCAACTGGGTGTCGCATCACATCAGCAACTTCGGGTTTAAC
TGCCAGTGGAGCAAGTGGGCTCAGGGTCTTCCATCGCCAATCGATCCGAG
TGCCACCAATCTGCAGCCAAAGGTGGTTTTCCTGAGGGAATTGCTCAAGA
AGTGCTTCAGACTTTCGTACCACCAAAGAATTAAAGATGTAGTGCCGGAT
ATACTGGCCGATTTTCTTCCGCCGCCGGTACTGCCGCACTTCAAGTTTGT
CGACGAAACCCTTCCTGGTGCCATTTTGTCCAAGGATCTGCTGGAGGCGA
TGCGCAGCCCGCAAGCAAGCCCCGAAATGATCTCTGAAATTATTAAATCC
AGCACGGGAATCGGTCCGCTGCTCAAGATCAACGTGTTCACCCAGAACTG
TCTTCATCTGGGATCCAAATCATTTAGCCACACTTTCGGGATACTTCGAA
AATATCACTCTGTCTTCAAGGATTTGGTTGCAGGAGATCCAGAGAGGCAG
GCCGCGGTCTTGAACGGAATCTTCGATGTGTGGGTCGCCAGCGATCAGTA
CAAATTTGTGGTGACCGAAAAGCTGGTCACGGGGTTGATAATTGAGCCCA
TTAGCGTTGTGCGTTGGATCTTCGGCCCATCGATGCGCAAGGAGCTCACC
AAGATATACATTTGGGAGCTGCTCCACTCCGCTCTCCGCCACCTGAAGCG
TGTCCAACAAAAGATCGAAGTCGTGGATGTCGATGATCCAAGTGCATGCG
ATCCTGTAGTCAAAGGCATTCTGTTCACCATTGTGCAGCGTTTTGTGAAG
ACTCTTTGCGGTGCTCCGTTTGCAGACGAGGGAACAGAGGAGCATTACTG
GTTCCAGTGGGTTCTGGGCAGACTGGAGGAGACGCTCTTTATCTATGCGG
ATGACTTTAGGGTGATCAATAACAAGTTGATTAAAATGTCCGAGGATGCA
TCAGATCTCAGGCCTGAAATCTCAAAAACCATTGCGGCTTTTGTGGCTTG
CGTCATGTAACTTCTGTTGAAGATTTCATTCCCGACTCTCGATTTACGAA
TTTGACAACCAACTGGTGATTTACTTATTCAACGGACAAACTCAATATAC
ACTCCCAAAAAAAAAATGTGTACAAAAAACACTATACAATTTTAATAATT
TTTTATTACTTTGGGAGAAATAATACTGCTATCAAAAAAAAAAAAAAAAA
AAAAAA

IP13958.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:23:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG7907-RB 2737 CG7907-RB 1..2736 1..2736 13680 100 Plus
CG7907-RC 2720 CG7907-RC 225..2719 242..2736 12475 100 Plus
CG7907-RC 2720 CG7907-RC 101..224 1..124 620 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:42:03
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 17227852..17229320 242..1710 7345 100 Plus
chr3R 27901430 chr3R 17229787..17230501 2019..2733 3575 100 Plus
chr3R 27901430 chr3R 17229388..17229700 1709..2021 1565 100 Plus
chr3R 27901430 chr3R 17227546..17227786 1..241 1205 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:21:17 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:42:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21404041..21405509 242..1710 7345 100 Plus
3R 32079331 3R 21405976..21406697 2019..2740 3595 99.9 Plus
3R 32079331 3R 21405577..21405889 1709..2021 1565 100 Plus
3R 32079331 3R 21403735..21403975 1..241 1205 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:15:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 21144872..21146340 242..1710 7345 100 Plus
3R 31820162 3R 21146807..21147528 2019..2740 3595 99.8 Plus
3R 31820162 3R 21146408..21146720 1709..2021 1565 100 Plus
3R 31820162 3R 21144566..21144806 1..241 1205 100 Plus
Blast to na_te.dros performed 2019-03-16 17:42:01
Subject Length Description Subject Range Query Range Score Percent Strand
297 6995 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). 598..675 2622..2699 119 64.6 Plus

IP13958.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:42:58 Download gff for IP13958.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 17227546..17227786 1..241 100 -> Plus
chr3R 17227852..17229320 242..1710 100 -> Plus
chr3R 17229390..17229699 1711..2020 100 -> Plus
chr3R 17229789..17230501 2021..2733 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:56:11 Download gff for IP13958.complete
Subject Subject Range Query Range Percent Splice Strand
CG7907-RC 1..2262 299..2560 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:40:32 Download gff for IP13958.complete
Subject Subject Range Query Range Percent Splice Strand
CG7907-RC 1..2262 299..2560 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:00:14 Download gff for IP13958.complete
Subject Subject Range Query Range Percent Splice Strand
CG7907-RB 1..2262 299..2560 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:16:11 Download gff for IP13958.complete
Subject Subject Range Query Range Percent Splice Strand
CG7907-RC 1..2262 299..2560 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:04:48 Download gff for IP13958.complete
Subject Subject Range Query Range Percent Splice Strand
CG7907-RB 1..2262 299..2560 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:13:17 Download gff for IP13958.complete
Subject Subject Range Query Range Percent Splice Strand
CG7907-RB 1..2733 1..2733 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:40:32 Download gff for IP13958.complete
Subject Subject Range Query Range Percent Splice Strand
CG7907-RB 1..2733 1..2733 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:00:14 Download gff for IP13958.complete
Subject Subject Range Query Range Percent Splice Strand
CG7907-RB 1..2733 1..2733 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:16:12 Download gff for IP13958.complete
Subject Subject Range Query Range Percent Splice Strand
CG7907-RB 1..2733 1..2733 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:04:48 Download gff for IP13958.complete
Subject Subject Range Query Range Percent Splice Strand
CG7907-RB 1..2733 1..2733 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:42:58 Download gff for IP13958.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21403735..21403975 1..241 100 -> Plus
3R 21404041..21405509 242..1710 100 -> Plus
3R 21405579..21405888 1711..2020 100 -> Plus
3R 21405978..21406690 2021..2733 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:42:58 Download gff for IP13958.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21403735..21403975 1..241 100 -> Plus
3R 21404041..21405509 242..1710 100 -> Plus
3R 21405579..21405888 1711..2020 100 -> Plus
3R 21405978..21406690 2021..2733 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:42:58 Download gff for IP13958.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21403735..21403975 1..241 100 -> Plus
3R 21404041..21405509 242..1710 100 -> Plus
3R 21405579..21405888 1711..2020 100 -> Plus
3R 21405978..21406690 2021..2733 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:00:14 Download gff for IP13958.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17229457..17229697 1..241 100 -> Plus
arm_3R 17229763..17231231 242..1710 100 -> Plus
arm_3R 17231301..17231610 1711..2020 100 -> Plus
arm_3R 17231700..17232412 2021..2733 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:02:59 Download gff for IP13958.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21144566..21144806 1..241 100 -> Plus
3R 21144872..21146340 242..1710 100 -> Plus
3R 21146410..21146719 1711..2020 100 -> Plus
3R 21146809..21147521 2021..2733 100   Plus

IP13958.pep Sequence

Translation from 298 to 2559

> IP13958.pep
MGRRKREDSSDEEGDDCRQKRTAETTVKTVEQLMRELSFPGHTPLELKLG
NLGYLLGKGMSVDLKENLINELVICLGYYPGQASAYATLVGLINVADFEF
GSECLLFMAHKVGESVHIRDWNRCRGVVHCMVDLYHCQVLPSSYILKLLA
AFLKDCEALKDPDDLVGVTPQIRRDFLAYCVLSAMPLIGRDLEGETAFDK
LIVSLQIYIKKRSALHTNMLSVWPDFNQRDYLELLWQQVDGMRQNHWAEP
EHQLIPRPYKSFSETLSHGRIHQLRDYDLAAHEERCRYPLPRVCFRIFSC
DSVGEIPNMPPPVSIERHLLEAHILDILISFHKERKICADSLLMYAASKP
QLPVYYCIVEVILGEMLRLPTANWSTIAYGSILVELCKRQPDKIPQVVAQ
ALDIIYNRLNSMSVACFDRLVNWVSHHISNFGFNCQWSKWAQGLPSPIDP
SATNLQPKVVFLRELLKKCFRLSYHQRIKDVVPDILADFLPPPVLPHFKF
VDETLPGAILSKDLLEAMRSPQASPEMISEIIKSSTGIGPLLKINVFTQN
CLHLGSKSFSHTFGILRKYHSVFKDLVAGDPERQAAVLNGIFDVWVASDQ
YKFVVTEKLVTGLIIEPISVVRWIFGPSMRKELTKIYIWELLHSALRHLK
RVQQKIEVVDVDDPSACDPVVKGILFTIVQRFVKTLCGAPFADEGTEEHY
WFQWVLGRLEETLFIYADDFRVINNKLIKMSEDASDLRPEISKTIAAFVA
CVM*

IP13958.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 13:29:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22594-PA 783 GF22594-PA 41..783 24..753 1794 48.2 Plus
Dana\GF21419-PA 800 GF21419-PA 1..797 1..750 1118 32.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 13:29:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24620-PA 756 GG24620-PA 7..756 2..753 2898 70.7 Plus
Dere\GG18719-PA 800 GG18719-PA 1..797 1..750 1114 32.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 13:29:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24565-PA 800 GH24565-PA 1..797 1..750 1109 32.4 Plus
Dgri\GH11294-PA 743 GH11294-PA 4..724 2..733 1079 34.3 Plus
Dgri\GH12873-PA 252 GH12873-PA 1..194 309..508 437 45 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:02:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG7907-PC 753 CG7907-PC 1..753 1..753 3971 100 Plus
CG7907-PB 753 CG7907-PB 1..753 1..753 3971 100 Plus
Cbp80-PB 800 CG7035-PB 1..797 1..750 1092 32.7 Plus
Cbp80-PA 800 CG7035-PA 1..797 1..750 1092 32.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 13:29:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24596-PA 742 GI24596-PA 5..728 3..738 1284 37.8 Plus
Dmoj\GI15172-PA 800 GI15172-PA 1..797 1..750 1089 32.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 13:29:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14760-PA 800 GL14760-PA 1..797 1..750 1124 32.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 13:29:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20048-PA 800 GA20048-PA 1..797 1..750 1124 32.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 13:29:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10424-PA 751 GM10424-PA 1..751 1..753 3390 83 Plus
Dsec\GM12358-PA 800 GM12358-PA 1..797 1..750 1118 32.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 13:29:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19424-PA 751 GD19424-PA 1..751 1..753 3356 83.8 Plus
Dsim\GD16701-PA 409 GD16701-PA 1..392 1..396 594 34.1 Plus
Dsim\GD24743-PA 306 GD24743-PA 3..303 504..750 280 27.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 13:29:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16385-PA 741 GJ16385-PA 3..727 2..738 1306 37.8 Plus
Dvir\GJ17049-PA 783 GJ17049-PA 1..780 1..750 989 31 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 13:29:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25694-PA 826 GK25694-PA 10..823 1..750 1121 33.2 Plus
Dwil\GK25785-PA 800 GK25785-PA 1..797 1..750 1111 32.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 13:29:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25733-PA 761 GE25733-PA 7..761 2..753 3040 74.9 Plus
Dyak\GE25736-PA 769 GE25736-PA 7..728 2..719 2964 75.9 Plus
Dyak\GE16357-PA 800 GE16357-PA 1..797 1..750 1113 32.5 Plus

IP13958.hyp Sequence

Translation from 298 to 2559

> IP13958.hyp
MGRRKREDSSDEEGDDCRQKRTAETTVKTVEQLMRELSFPGHTPLELKLG
NLGYLLGKGMSVDLKENLINELVICLGYYPGQASAYATLVGLINVADFEF
GSECLLFMAHKVGESVHIRDWNRCRGVVHCMVDLYHCQVLPSSYILKLLA
AFLKDCEALKDPDDLVGVTPQIRRDFLAYCVLSAMPLIGRDLEGETAFDK
LIVSLQIYIKKRSALHTNMLSVWPDFNQRDYLELLWQQVDGMRQNHWAEP
EHQLIPRPYKSFSETLSHGRIHQLRDYDLAAHEERCRYPLPRVCFRIFSC
DSVGEIPNMPPPVSIERHLLEAHILDILISFHKERKICADSLLMYAASKP
QLPVYYCIVEVILGEMLRLPTANWSTIAYGSILVELCKRQPDKIPQVVAQ
ALDIIYNRLNSMSVACFDRLVNWVSHHISNFGFNCQWSKWAQGLPSPIDP
SATNLQPKVVFLRELLKKCFRLSYHQRIKDVVPDILADFLPPPVLPHFKF
VDETLPGAILSKDLLEAMRSPQASPEMISEIIKSSTGIGPLLKINVFTQN
CLHLGSKSFSHTFGILRKYHSVFKDLVAGDPERQAAVLNGIFDVWVASDQ
YKFVVTEKLVTGLIIEPISVVRWIFGPSMRKELTKIYIWELLHSALRHLK
RVQQKIEVVDVDDPSACDPVVKGILFTIVQRFVKTLCGAPFADEGTEEHY
WFQWVLGRLEETLFIYADDFRVINNKLIKMSEDASDLRPEISKTIAAFVA
CVM*

IP13958.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:02:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG7907-PC 753 CG7907-PC 1..753 1..753 3971 100 Plus
CG7907-PB 753 CG7907-PB 1..753 1..753 3971 100 Plus
Cbp80-PB 800 CG7035-PB 1..797 1..750 1092 32.7 Plus
Cbp80-PA 800 CG7035-PA 1..797 1..750 1092 32.7 Plus