Clone IP13959 Report

Search the DGRC for IP13959

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:139
Well:59
Vector:pOT2
Associated Gene/TranscriptCG7991-RC
Protein status:IP13959.pep: gold
Preliminary Size:2577
Sequenced Size:3242

Clone Sequence Records

IP13959.complete Sequence

3242 bp assembled on 2009-07-02

GenBank Submission: BT088904.1

> IP13959.complete
AAGGAAGGACGCTGCCACATCGTTACCAACCTATCGTCACAATGGCGACA
ACGTGTCTATCACCACTGCCCCACCTGCGGATAGACTGCCTCTGGGTTAC
GAGGGAGCTGGAACTATAGAGCTGCAGGCTCAGGAGAACGACTACGTGCT
TGAGGAGTCCGCCCTACGAGTCCCACTCTCCCCGCCGCCGAACTACTCTC
CGCATCCTTTGACCCCACCGCCCAGTTACACGGAGAGACCAAGATCAGTC
CAGGAACACAGATCGCACTTGGCCGAGGCACTGCATCCAGCTGCCCCCGC
ACGTGTAGTGATATTTCCCCCAGTAGGCGCAAATACAGCAGCTAGCGAAC
AGGCAGCACGTCAACAAGCCAGAAGGAGACGGCGACTCCGGGAGCTTCAG
CAGCAGCAGCTGCGATTCGCCTCCAGCACCGATAGCTCCAGTAGCTCCGG
ATCCAGTTGCTCCGAATTAGGGAGCGACAGTGCTAGCAGAAGGCAGCGTC
GACGCAGGCGGGGATTAAGGGATGCCTATTGTCCAGATCTTCTGAACGCG
TGCTCCCTGATCCTCCAGAACCCCGGCAGCAGTGACAGTTCCGTGGGTAA
CTTCACGGCCACGCCCCCGCCTCCGGTGCGAGCACCTGGTCACCGGGATC
AGGAGGAGAGCTTCGAGTACAGCTCCGACTATGTGGAGATCGACGAGCTG
CTGCCACTAGTCGCCGGCGGGAGAGCGAAGAGCACTCCGCAGCTGGCGAT
GGGTCAAAACCTGAGCCTGCGACGGCCGCGCATCTCATTGACCTGGGTGC
TCCGAGAGCAGCAGCAGACGCAGCAGGCTCCTCCGTCGCAAACACCCCCA
TCCCCGCAGAAGGAGGCAGCGAAGGAATCGGACAGCCAGGTGCTGGATCG
CAAGGAGAACGAAGTCTTCCCGCCCAGAACAGAGCCCGTGCCCACCCAGC
TGGATGTCACCAAGAAGCGGTACCGTGTTAAGCAGCTACCAAGTGGTGGT
GAGCCGCTCAATGGCTATGCCACCACGCCCACCGCCCACCAGGCTCCTCC
CAACGGTCACCTGGCCAACCAGAAGTTCTTCAGCAACCAAAACCTGCTGG
ACGTGTCACGGAGCGGTCCCAGCAGTGCTCCAGTGGCCGCCGCCTCCACC
AAAGAGCTGCTCTTCGTGTGCACACCCCAGCGGGCGCCCAGGACCGATAG
TCATAGCGAAGCCCTGCTTCTGGCCAGAAAGCGAAACGAGATCCGTAAGA
AGCTGGCCTCCCGCCTGCAGCAGGCAAGATCCAGTGCCTCGCAGGCGGGT
GAGGCCAGGGGATCGGTCACGGGAGCGGAGTCTGTAAAGTGCACCTCCTA
CTCGGAGCCCAGTTTGGTGGCTGCCTCGGAGGGCGGCGGAGTGGGGGGCT
CGGGCGGAGGAGCAGCTGCCCCCCAGCAGCAGCGGAGACATAGGCATCGC
AAGCGTCGGGATCGCAATCGTGTGCAGAGATTTGGCTATGAGATCCACAA
CGTGGACGAGTTTCTCTCCCGCTGCTCTCTGGCCACTCCCGGCAATATTC
CCGTGGTTCTTTCCACGGCCAGCACCCTATACCAAACGAGACCAGGTGGC
TACCAACTGGAGATCCCTCTGCCCCTGGGCATGGTGGTGAATGCGGTTTT
CAAGAACCAGAACTGGCTGTATGTGCAAACGCCCCACGCGGAGGAGGGCT
ATGTGGGCTATGCCTGCTGCCTGCCCCTTGGGATTCTGCCCCAGCAGGCA
AGAGCGGGCTCCAGGAACACCCCCTGCTGGGAGTCCAATGCGGATGTCTT
CCCCCGCCCATGTGGCAACATGACGGACTCGGAGAAGGAGATCCGCCTGC
GTGGTGGCACCCGATCCGATGGCGCCCGCACTCCACGCAGCTCAAAGCCC
ACTGAAGATGTCCTCAAGATCGGATCCACCACCATCAACAACAACAACAA
CCATAGCAATAATAATAACCAAGCGAAGTGCGGGAGCACAACCAGCTCCT
TGTACGGAGAACAACAGGTGGACAAGCTGTATCTGAGGGCCGCATCCAAG
CCGCGCCTAGTGGAGAAGGCGTACGCCCAGTTGCGCTCCACTCGCCAGGT
GACTGCATCTGGTTCAGCTTCGGCCAAGAGCGGCGCTTCTCAGGATGAGT
ATGTGACCCTGCAGCCAAAGCCCGCCAAGAAGCAGCCGAGTGCCCAAGCC
CATTTGCACCAGTCACAGCCAGCGGCCAGGCGCCTCTCCAACGTGTCCTA
CATCACCAACGGCCACAATGGCCAGCATCTGCATCCGAAGCTCGTGCCCC
TGCCACCCTACGAGCACAAGCCGGCCAAGAACCAGGCGGAGGCAGACGCC
ACCCTAAAGGCGCTGCGGCGCCAGCAGGAGGTGGGCCAGCGACAAACTCT
AGTCGCCATCAACACGGACTACATCACGGAGAGCATCGCGGTGCACAAGG
GTGAGATTGTCACGCTGTGCGAGTGCCGCGAGTCCAAGGATCAGCGCCAG
TGGTTCTACGTGCGGACGAGGGACGGACGCGAAGGCTTCATTCCGGCCGA
GGTGGCCGGCCATGGCTACCTGTAGACCTCCACCTTCTGGTATTGGTATG
GGTCTCTAAGGGTCATATGAAAGGGATTAGAAAGCTTAATGTTAACTATG
GACATCCTTTGTCATATTAACCAACCATCATATAATTGCTATATCTAGAA
TATCTTAATCTTTAAGATTTTCTCATGATTTTGTGGTAAATTACTTAGCT
TTATATTTCGACTCTTTCCATTACTGAGTAAAGTATCATTCATGAAAAAA
TGGAGCCCAACCACCGTAAGTTGTCCAAAGAGCACCTTCTCCCTTTTAAG
ATTTCCAAAAGGACCCACCCCAAAAACAAGTCAAGTTCTACATTTAAATG
AATTAACTTAATACCCATCTTAAGCACTCATAGGCCACTAATTCCATTCG
CGATCCTTAGTACGCTTCTAGTTGTAAACTGTATTCATATCGGTGTCCGT
AATTGAATTGAATTGTATCTGTATCTGTGTATGTTTATGTGCGTGAGTGT
GGATCCTTCGCAGGATCTTGTATTTATCTAGCCTAGCATTACGAGTACTC
TATGTAATAGAAAACTTGCTTAAATGAAATCAAAGACGAAAGCGAAGACG
GAACCTATTTATATAATAACTGTACTTGATGCTTCTAATAAATAACAGAC
ATTTAAATAAATATAAAAAACCAAAAAAAAAAAAAAAAAAAA

IP13959.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:33:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG7991.a 3154 CG7991.a 14..3154 12..3152 15705 100 Plus
CG7991-RA 2744 CG7991-RA 14..2744 12..2742 13655 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:53:36
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 1712400..1715101 521..3222 13510 100 Plus
chr3L 24539361 chr3L 1711833..1712343 11..521 2555 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:21:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:53:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1712840..1715542 521..3223 13515 100 Plus
3L 28110227 3L 1712273..1712783 11..521 2555 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:49:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 1712840..1715542 521..3223 13515 100 Plus
3L 28103327 3L 1712273..1712783 11..521 2555 100 Plus
Blast to na_te.dros performed 2019-03-15 18:53:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2370..2473 1915..2016 145 62.5 Plus
Stalker2 7672 Stalker2 STALKER2 7672bp 3956..4016 2734..2675 139 77.8 Minus

IP13959.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:54:38 Download gff for IP13959.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 1711833..1712343 11..521 100 -> Plus
chr3L 1712401..1715101 522..3222 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:11:28 Download gff for IP13959.complete
Subject Subject Range Query Range Percent Splice Strand
CG7991-RA 12..2577 8..2575 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:49:47 Download gff for IP13959.complete
Subject Subject Range Query Range Percent Splice Strand
CG7991-RB 93..2667 1..2575 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:34:36 Download gff for IP13959.complete
Subject Subject Range Query Range Percent Splice Strand
CG7991-RB 93..2667 1..2575 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:03:41 Download gff for IP13959.complete
Subject Subject Range Query Range Percent Splice Strand
CG7991-RB 93..2667 1..2575 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-02 16:10:40 Download gff for IP13959.complete
Subject Subject Range Query Range Percent Splice Strand
CG7991-RA 12..2577 8..2575 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:49:47 Download gff for IP13959.complete
Subject Subject Range Query Range Percent Splice Strand
CG7991-RC 852..4073 1..3222 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:34:36 Download gff for IP13959.complete
Subject Subject Range Query Range Percent Splice Strand
CG7991-RB 506..3727 1..3222 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:03:41 Download gff for IP13959.complete
Subject Subject Range Query Range Percent Splice Strand
CG7991-RB 506..3727 1..3222 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:54:38 Download gff for IP13959.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1712273..1712783 11..521 100 -> Plus
3L 1712841..1715541 522..3222 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:54:38 Download gff for IP13959.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1712273..1712783 11..521 100 -> Plus
3L 1712841..1715541 522..3222 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:54:38 Download gff for IP13959.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1712273..1712783 11..521 100 -> Plus
3L 1712841..1715541 522..3222 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:34:36 Download gff for IP13959.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1712273..1712783 11..521 100 -> Plus
arm_3L 1712841..1715541 522..3222 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:25:35 Download gff for IP13959.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1712273..1712783 11..521 100 -> Plus
3L 1712841..1715541 522..3222 100   Plus

IP13959.pep Sequence

Translation from 1 to 2574

> IP13959.pep
RKDAATSLPTYRHNGDNVSITTAPPADRLPLGYEGAGTIELQAQENDYVL
EESALRVPLSPPPNYSPHPLTPPPSYTERPRSVQEHRSHLAEALHPAAPA
RVVIFPPVGANTAASEQAARQQARRRRRLRELQQQQLRFASSTDSSSSSG
SSCSELGSDSASRRQRRRRRGLRDAYCPDLLNACSLILQNPGSSDSSVGN
FTATPPPPVRAPGHRDQEESFEYSSDYVEIDELLPLVAGGRAKSTPQLAM
GQNLSLRRPRISLTWVLREQQQTQQAPPSQTPPSPQKEAAKESDSQVLDR
KENEVFPPRTEPVPTQLDVTKKRYRVKQLPSGGEPLNGYATTPTAHQAPP
NGHLANQKFFSNQNLLDVSRSGPSSAPVAAASTKELLFVCTPQRAPRTDS
HSEALLLARKRNEIRKKLASRLQQARSSASQAGEARGSVTGAESVKCTSY
SEPSLVAASEGGGVGGSGGGAAAPQQQRRHRHRKRRDRNRVQRFGYEIHN
VDEFLSRCSLATPGNIPVVLSTASTLYQTRPGGYQLEIPLPLGMVVNAVF
KNQNWLYVQTPHAEEGYVGYACCLPLGILPQQARAGSRNTPCWESNADVF
PRPCGNMTDSEKEIRLRGGTRSDGARTPRSSKPTEDVLKIGSTTINNNNN
HSNNNNQAKCGSTTSSLYGEQQVDKLYLRAASKPRLVEKAYAQLRSTRQV
TASGSASAKSGASQDEYVTLQPKPAKKQPSAQAHLHQSQPAARRLSNVSY
ITNGHNGQHLHPKLVPLPPYEHKPAKNQAEADATLKALRRQQEVGQRQTL
VAINTDYITESIAVHKGEIVTLCECRESKDQRQWFYVRTRDGREGFIPAE
VAGHGYL*

IP13959.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:16:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24826-PA 915 GF24826-PA 224..915 174..857 2478 80.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:16:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14817-PA 867 GG14817-PA 8..867 1..857 3567 94.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:16:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15964-PA 909 GH15964-PA 182..909 170..857 2221 68.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:51:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG7991-PB 888 CG7991-PB 32..888 1..857 4454 100 Plus
CG7991-PC 608 CG7991-PC 1..608 250..857 3169 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:16:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16615-PA 869 GI16615-PA 168..869 171..857 2189 67.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:16:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11952-PA 891 GL11952-PA 221..880 174..817 2039 68.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:16:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20747-PA 901 GA20747-PA 179..901 174..857 2385 73 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:16:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14438-PA 864 GM14438-PA 11..864 4..857 4399 97.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:16:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13640-PA 861 GD13640-PA 30..861 4..857 4229 94.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:16:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12872-PA 909 GJ12872-PA 183..909 174..857 2140 67.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:16:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17115-PA 944 GK17115-PA 207..944 172..857 2246 69.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:16:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21180-PA 911 GE21180-PA 58..911 4..857 3581 95.3 Plus

IP13959.hyp Sequence

Translation from 11 to 2574

> IP13959.hyp
AATSLPTYRHNGDNVSITTAPPADRLPLGYEGAGTIELQAQENDYVLEES
ALRVPLSPPPNYSPHPLTPPPSYTERPRSVQEHRSHLAEALHPAAPARVV
IFPPVGANTAASEQAARQQARRRRRLRELQQQQLRFASSTDSSSSSGSSC
SELGSDSASRRQRRRRRGLRDAYCPDLLNACSLILQNPGSSDSSVGNFTA
TPPPPVRAPGHRDQEESFEYSSDYVEIDELLPLVAGGRAKSTPQLAMGQN
LSLRRPRISLTWVLREQQQTQQAPPSQTPPSPQKEAAKESDSQVLDRKEN
EVFPPRTEPVPTQLDVTKKRYRVKQLPSGGEPLNGYATTPTAHQAPPNGH
LANQKFFSNQNLLDVSRSGPSSAPVAAASTKELLFVCTPQRAPRTDSHSE
ALLLARKRNEIRKKLASRLQQARSSASQAGEARGSVTGAESVKCTSYSEP
SLVAASEGGGVGGSGGGAAAPQQQRRHRHRKRRDRNRVQRFGYEIHNVDE
FLSRCSLATPGNIPVVLSTASTLYQTRPGGYQLEIPLPLGMVVNAVFKNQ
NWLYVQTPHAEEGYVGYACCLPLGILPQQARAGSRNTPCWESNADVFPRP
CGNMTDSEKEIRLRGGTRSDGARTPRSSKPTEDVLKIGSTTINNNNNHSN
NNNQAKCGSTTSSLYGEQQVDKLYLRAASKPRLVEKAYAQLRSTRQVTAS
GSASAKSGASQDEYVTLQPKPAKKQPSAQAHLHQSQPAARRLSNVSYITN
GHNGQHLHPKLVPLPPYEHKPAKNQAEADATLKALRRQQEVGQRQTLVAI
NTDYITESIAVHKGEIVTLCECRESKDQRQWFYVRTRDGREGFIPAEVAG
HGYL*

IP13959.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:02:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG7991-PB 888 CG7991-PB 35..888 1..854 4438 100 Plus
CG7991-PC 608 CG7991-PC 1..608 247..854 3169 100 Plus