Clone IP14616 Report

Search the DGRC for IP14616

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:146
Well:16
Vector:pOT2
Associated Gene/Transcriptlms-RB
Protein status:IP14616.pep: gold
Sequenced Size:1586

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13424 2008-04-29 Release 5.5 accounting
CG13424 2008-08-15 Release 5.9 accounting
CG13424 2008-12-18 5.12 accounting

Clone Sequence Records

IP14616.complete Sequence

1586 bp (1586 high quality bases) assembled on 2006-09-22

GenBank Submission: BT029105

> IP14616.complete
CGCGCTGTTGTCTCCGGAATATCTTCAAAATATATATCGCTCGCAATCGG
CGGAAACATGAATTCGCAATCGGCAGTGCGTCGCTATCCACACAGTTTTT
CCATCGAACAAATTCTGGCCAAGCCGGAAATGCGCAGCTCCACTTCCTTT
GAGGACTCCGTGCAGGATGAAAGCGGTCGCGGTGGCAATTGTCTCGGTGC
TTCACGGGCTTCCAGTCCGGCAACATCGAGTTGCTTGGATGACAACATGG
ACGACGGCAAAAGTGATATCGATTTGGCCTCAGATGATGGAAACGGCCTT
GGTGATGACCGCAAAAAGCGACCGCGTACCGCCTTCTCGGCAGCTCAAAT
CAAAGCACTGGAAACGGAGTTCGAAAGGGGAAAGTATCTTTCGGTGGCGA
AGCGAACTGCACTGGCCAAGCAGCTGCAGCTCACAGAAACGCAGATCAAG
ATCTGGTTCCAAAACCGCCGCACCAAGTGGAAGCGCAAGTACACCTCGGA
CGTGGAAACGCTGGCCTCGCACTATTACGCCCAGCTGGGTATCGGGGGAT
TGGCCAGGCCGATGGTGGTTGGTGATCGCCTTTGGCTCTTTAGCCAAACG
CCAACGGGTCCCACGCCCATTCAGTCCATTATGCTAAATGGCAGTGGCTC
CGCTGCACCCATGGCCTCAGCAACGACGGCCACCGGCTCACCCATGCGTC
CGTACGCGACTAGCGGCGGAATGCCACCGTTGCCGGGTCCCAGTGTGATG
GAGAGTGCCCGTAATGCCATACTGGCACGTGGACAACCCTTGAACTTCGC
CCTGCCCTTTGGCGTGGCTAAGCCGCCGGCGGGTGGTGTGCCTGCGGCCA
GCTACATCCCTCGCTGCAAGCCGTATGCGACCAGCTATGTGGACTACGCG
GCGTCACTGCCAACGAACGAGAGCTATCTGCAAATGAAGTACGCGACGCT
GCCGCCGGAAGCGGAAAGCGGCGCCTCCAATGGCCTCGCCGAACTGGAAC
GCGTCTTTGGGGATGCCAATGCCAACTTTCTGCAACAACGCAGCACGCCA
GTCGCTGGAACAGCCACAGCCTACGGCCACGATGGATTAAATCAGGCGCA
GCGGAGCCGCAGACCCACACAATCGGAGTCCGAGTGCAGCGACATTGACT
GCGAGCATCTGGACGAGGATGAGGAGCCACCTGCTGCGGAGTGAAAAGGC
GATTGGTTGTCTTTAGAATTTATGTTCCGTACGTCTCTCATACACACAAA
AATATGCTCATACAAAGTGTAGTCATAGGGGGTAGTAGAGTAGGTGTCCT
GTCTGGGTTGATTCCATTACAACTAGCTGAGAGTGGCACACTTTCAGATC
TGGCCGGGATTACTGGCGTACCCCTGGTGGCTCAGCACTGGTCTAGTTTA
CGTTGTGGTTCTAGTACTAGTACTAGCGCTAGTTATTGCTATTCTATGTT
ACATTGTGTGGGTCGGGTACTGTTTACTGACTGGCTCTCAACAATTAATA
AATGTAAATTAAATAATCAAAAATCACAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

IP14616.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:15:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG13424-RA 2048 CG13424-RA 43..1572 1..1530 7650 100 Plus
Mgat1-RA 2989 Mgat1-RA 2594..2989 1530..1135 1980 100 Minus
NK7_1.b 2689 NK7_1.b 1614..1684 413..483 235 88.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:54:15
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 16445159..16446244 442..1527 5430 100 Plus
chr2R 21145070 chr2R 16443671..16443966 1..296 1480 100 Plus
chr2R 21145070 chr2R 16444856..16445005 295..444 750 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:22:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:54:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20558389..20559477 442..1530 5445 100 Plus
2R 25286936 2R 20556901..20557196 1..296 1480 100 Plus
2R 25286936 2R 20558086..20558235 295..444 750 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:08:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 20559588..20560676 442..1530 5445 100 Plus
2R 25260384 2R 20558100..20558395 1..296 1480 100 Plus
2R 25260384 2R 20559285..20559434 295..444 750 100 Plus
Blast to na_te.dros performed on 2019-03-15 15:54:14 has no hits.

IP14616.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:54:59 Download gff for IP14616.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 16443671..16443965 1..295 100 -> Plus
chr2R 16444857..16445005 296..444 100 -> Plus
chr2R 16445162..16446244 445..1527 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:57:18 Download gff for IP14616.complete
Subject Subject Range Query Range Percent Splice Strand
CG13424-RA 43..1236 1..1194 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:25:54 Download gff for IP14616.complete
Subject Subject Range Query Range Percent Splice Strand
CG13424-RA 43..1236 1..1194 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:45:55 Download gff for IP14616.complete
Subject Subject Range Query Range Percent Splice Strand
lms-RB 1..1137 58..1194 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:45:41 Download gff for IP14616.complete
Subject Subject Range Query Range Percent Splice Strand
CG13424-RA 43..1236 1..1194 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:20:47 Download gff for IP14616.complete
Subject Subject Range Query Range Percent Splice Strand
lms-RB 1..1137 58..1194 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:54:20 Download gff for IP14616.complete
Subject Subject Range Query Range Percent Splice Strand
CG13424-RA 43..1569 1..1527 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:25:54 Download gff for IP14616.complete
Subject Subject Range Query Range Percent Splice Strand
CG13424-RA 43..1569 1..1527 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:45:55 Download gff for IP14616.complete
Subject Subject Range Query Range Percent Splice Strand
lms-RB 25..1551 1..1527 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:45:41 Download gff for IP14616.complete
Subject Subject Range Query Range Percent Splice Strand
CG13424-RA 43..1569 1..1527 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:20:47 Download gff for IP14616.complete
Subject Subject Range Query Range Percent Splice Strand
lms-RB 25..1551 1..1527 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:54:59 Download gff for IP14616.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20556901..20557195 1..295 100 -> Plus
2R 20558087..20558235 296..444 100 -> Plus
2R 20558392..20559474 445..1527 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:54:59 Download gff for IP14616.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20556901..20557195 1..295 100 -> Plus
2R 20558087..20558235 296..444 100 -> Plus
2R 20558392..20559474 445..1527 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:54:59 Download gff for IP14616.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20556901..20557195 1..295 100 -> Plus
2R 20558087..20558235 296..444 100 -> Plus
2R 20558392..20559474 445..1527 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:45:55 Download gff for IP14616.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16444406..16444700 1..295 100 -> Plus
arm_2R 16445592..16445740 296..444 100 -> Plus
arm_2R 16445897..16446979 445..1527 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:52:56 Download gff for IP14616.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20558100..20558394 1..295 100 -> Plus
2R 20559286..20559434 296..444 100 -> Plus
2R 20559591..20560673 445..1527 100   Plus

IP14616.pep Sequence

Translation from 0 to 1193

> IP14616.pep
RAVVSGISSKYISLAIGGNMNSQSAVRRYPHSFSIEQILAKPEMRSSTSF
EDSVQDESGRGGNCLGASRASSPATSSCLDDNMDDGKSDIDLASDDGNGL
GDDRKKRPRTAFSAAQIKALETEFERGKYLSVAKRTALAKQLQLTETQIK
IWFQNRRTKWKRKYTSDVETLASHYYAQLGIGGLARPMVVGDRLWLFSQT
PTGPTPIQSIMLNGSGSAAPMASATTATGSPMRPYATSGGMPPLPGPSVM
ESARNAILARGQPLNFALPFGVAKPPAGGVPAASYIPRCKPYATSYVDYA
ASLPTNESYLQMKYATLPPEAESGASNGLAELERVFGDANANFLQQRSTP
VAGTATAYGHDGLNQAQRSRRPTQSESECSDIDCEHLDEDEEPPAAE*

IP14616.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 12:32:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12182-PA 380 GF12182-PA 1..380 20..391 1572 80.3 Plus
Dana\GF17487-PA 728 GF17487-PA 352..464 82..193 224 43 Plus
Dana\B-H1-PA 943 GF22335-PA 694..781 84..172 216 47.2 Plus
Dana\GF23802-PA 532 GF23802-PA 449..514 104..169 202 53 Plus
Dana\GF18604-PA 341 GF18604-PA 218..283 104..169 197 48.5 Plus
Dana\B-H1-PA 943 GF22335-PA 372..424 104..156 158 49.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 12:32:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22042-PA 381 GG22042-PA 1..381 20..397 1899 93.7 Plus
Dere\GG21357-PA 721 GG21357-PA 353..515 65..233 225 37.6 Plus
Dere\GG19116-PA 551 GG19116-PA 284..371 84..172 218 47.2 Plus
Dere\GG19114-PA 650 GG19114-PA 384..490 104..206 208 41.8 Plus
Dere\GG24598-PA 382 GG24598-PA 168..239 96..169 203 56.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 12:32:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19750-PA 385 GH19750-PA 1..381 20..392 1367 68.9 Plus
Dgri\GH24903-PA 571 GH24903-PA 290..377 84..172 224 48.3 Plus
Dgri\GH13706-PA 752 GH13706-PA 383..462 86..163 217 51.2 Plus
Dgri\GH24902-PA 648 GH24902-PA 357..442 82..172 205 42.9 Plus
Dgri\GH22032-PA 406 GH22032-PA 179..258 86..163 204 53.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:30
Subject Length Description Subject Range Query Range Score Percent Strand
lms-PC 378 CG13424-PC 1..378 20..397 1961 100 Plus
lms-PB 378 CG13424-PB 1..378 20..397 1961 100 Plus
B-H2-PA 645 CG5488-PA 278..642 19..396 242 26.9 Plus
B-H2-PB 303 CG5488-PB 13..300 80..396 231 28.1 Plus
NK7.1-PD 721 CG8524-PD 328..514 35..233 228 35 Plus
NK7.1-PC 721 CG8524-PC 328..514 35..233 228 35 Plus
NK7.1-PB 721 CG8524-PB 328..514 35..233 228 35 Plus
NK7.1-PA 721 CG8524-PA 328..514 35..233 228 35 Plus
Hmx-PE 592 CG43748-PE 387..532 23..169 222 36.9 Plus
Hmx-PC 592 CG43748-PC 387..532 23..169 222 36.9 Plus
Hmx-PD 718 CG43748-PD 387..532 23..169 222 36.9 Plus
CG34031-PC 219 CG34031-PC 134..202 106..174 207 55.1 Plus
slou-PA 659 CG6534-PA 505..603 80..163 204 47 Plus
slou-PB 698 CG6534-PB 505..603 80..163 204 47 Plus
B-H1-PA 544 CG5529-PA 279..366 84..172 200 48.3 Plus
bap-PA 382 CG7902-PA 115..233 46..163 198 44.3 Plus
unpg-PA 485 CG1650-PA 247..376 55..162 187 36.9 Plus
C15-PA 339 CG7937-PA 216..281 104..169 186 48.5 Plus
CG11085-PA 295 CG11085-PA 61..226 27..171 184 33.7 Plus
exex-PA 525 CG8254-PA 438..503 104..169 184 53 Plus
HGTX-PA 513 CG13475-PA 389..457 102..170 181 47.8 Plus
inv-PE 576 CG17835-PE 437..528 67..162 176 43.8 Plus
inv-PB 576 CG17835-PB 437..528 67..162 176 43.8 Plus
inv-PD 576 CG17835-PD 437..528 67..162 176 43.8 Plus
ro-PB 350 CG6348-PB 188..258 102..175 174 50 Plus
ro-PA 350 CG6348-PA 188..258 102..175 174 50 Plus
Dll-PB 322 CG3629-PB 66..181 42..162 173 34.7 Plus
Dll-PA 327 CG3629-PA 66..181 42..162 173 34.7 Plus
Dll-PC 347 CG3629-PC 66..181 42..162 173 34.7 Plus
CG18599-PA 475 CG18599-PA 315..447 104..244 173 31.9 Plus
Dr-PA 515 CG1897-PA 422..487 106..171 173 47 Plus
Rx-PB 904 CG10052-PB 489..796 43..333 173 26.9 Plus
ems-PA 494 CG2988-PA 387..450 104..167 172 54.7 Plus
toe-PA 640 CG10704-PA 330..441 58..162 169 36.8 Plus
repo-PA 612 CG31240-PA 263..453 46..235 168 30.5 Plus
tin-PA 416 CG7895-PA 280..369 87..174 167 44 Plus
vnd-PB 577 CG6172-PB 354..456 66..162 166 39 Plus
vnd-PA 723 CG6172-PA 500..602 66..162 166 39 Plus
otp-PJ 374 CG10036-PJ 92..288 80..265 163 27 Plus
otp-PK 416 CG10036-PK 92..318 80..284 163 27.8 Plus
E5-PA 524 CG9930-PA 302..360 104..162 163 57.6 Plus
toy-PA 543 CG11186-PA 238..448 81..303 163 26.3 Plus
prd-PA 590 CG6716-PA 137..251 56..166 163 37.4 Plus
prd-PB 613 CG6716-PB 160..274 56..166 163 37.4 Plus
ey-PB 624 CG1464-PB 101..255 22..163 163 32.3 Plus
ey-PA 838 CG1464-PA 315..469 22..163 163 32.3 Plus
ey-PC 857 CG1464-PC 334..488 22..163 163 32.3 Plus
zen-PA 353 CG1046-PA 73..185 88..201 162 37.7 Plus
zen2-PB 232 CG1048-PB 21..80 103..162 161 51.7 Plus
zen2-PA 252 CG1048-PA 41..100 103..162 161 51.7 Plus
eve-PA 376 CG2328-PA 36..238 66..286 161 27.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 12:32:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20286-PA 392 GI20286-PA 1..389 20..392 1312 67.8 Plus
Dmoj\GI24795-PA 307 GI24795-PA 163..245 85..169 228 51.8 Plus
Dmoj\GI15964-PA 524 GI15964-PA 233..348 51..172 226 42.6 Plus
Dmoj\GI24810-PA 787 GI24810-PA 397..477 85..163 222 50.6 Plus
Dmoj\GI15962-PA 636 GI15962-PA 356..483 82..206 211 40.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 12:32:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11409-PA 383 GL11409-PA 1..379 20..391 1524 78.9 Plus
Dper\GL13779-PA 324 GL13779-PA 19..106 80..169 230 51.1 Plus
Dper\GL24020-PA 773 GL24020-PA 395..519 80..225 221 39 Plus
Dper\GL19888-PA 550 GL19888-PA 276..363 84..172 220 47.2 Plus
Dper\GL19887-PA 633 GL19887-PA 371..439 104..172 205 50.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 12:32:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12277-PA 383 GA12277-PA 1..379 20..391 1524 78.9 Plus
Dpse\GA30058-PA 591 GA30058-PA 442..529 80..169 247 51.1 Plus
Dpse\GA21136-PA 761 GA21136-PA 384..508 80..225 224 39 Plus
Dpse\GA28287-PA 626 GA28287-PA 352..439 84..172 221 47.2 Plus
Dpse\GA28280-PA 636 GA28280-PA 374..442 104..172 205 50.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 12:32:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22025-PA 378 GM22025-PA 1..378 20..397 1978 97.9 Plus
Dsec\GM15242-PA 280 GM15242-PA 119..200 85..169 225 51.8 Plus
Dsec\GM13509-PA 461 GM13509-PA 196..283 84..172 219 47.2 Plus
Dsec\GM25858-PA 729 GM25858-PA 359..521 65..233 219 38.2 Plus
Dsec\GM13506-PA 640 GM13506-PA 374..480 104..206 208 41.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 12:32:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11523-PA 378 GD11523-PA 1..378 20..397 1972 97.4 Plus
Dsim\GD20427-PA 719 GD20427-PA 352..451 65..163 220 47.1 Plus
Dsim\GD15668-PA 547 GD15668-PA 282..369 84..172 219 47.2 Plus
Dsim\GD15666-PA 638 GD15666-PA 372..478 104..206 208 41.8 Plus
Dsim\bap-PA 382 GD19423-PA 168..239 96..169 202 56.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 12:32:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22013-PA 373 GJ22013-PA 1..370 20..392 1403 73.2 Plus
Dvir\GJ24443-PA 289 GJ24443-PA 145..227 85..169 228 51.8 Plus
Dvir\GJ18855-PA 547 GJ18855-PA 234..348 51..172 227 41 Plus
Dvir\GJ18853-PA 701 GJ18853-PA 391..553 35..206 222 35.6 Plus
Dvir\GJ24455-PA 758 GJ24455-PA 385..462 88..163 221 52.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 12:32:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21480-PA 384 GK21480-PA 1..384 20..391 1155 64.2 Plus
Dwil\GK12153-PA 788 GK12153-PA 383..484 64..163 239 47.1 Plus
Dwil\GK18982-PA 233 GK18982-PA 84..171 80..169 230 51.1 Plus
Dwil\GK19953-PA 650 GK19953-PA 377..464 84..172 218 47.2 Plus
Dwil\GK19952-PA 696 GK19952-PA 382..492 104..210 205 40.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 12:32:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12123-PA 380 GE12123-PA 1..380 20..397 1889 92.4 Plus
Dyak\GE25478-PA 262 GE25478-PA 121..202 85..169 225 51.8 Plus
Dyak\GE17664-PA 574 GE17664-PA 306..393 84..172 218 47.2 Plus
Dyak\GE26456-PA 721 GE26456-PA 371..451 85..163 217 50.6 Plus
Dyak\GE17661-PA 656 GE17661-PA 381..487 104..206 208 41.8 Plus

IP14616.hyp Sequence

Translation from 0 to 1193

> IP14616.hyp
RAVVSGISSKYISLAIGGNMNSQSAVRRYPHSFSIEQILAKPEMRSSTSF
EDSVQDESGRGGNCLGASRASSPATSSCLDDNMDDGKSDIDLASDDGNGL
GDDRKKRPRTAFSAAQIKALETEFERGKYLSVAKRTALAKQLQLTETQIK
IWFQNRRTKWKRKYTSDVETLASHYYAQLGIGGLARPMVVGDRLWLFSQT
PTGPTPIQSIMLNGSGSAAPMASATTATGSPMRPYATSGGMPPLPGPSVM
ESARNAILARGQPLNFALPFGVAKPPAGGVPAASYIPRCKPYATSYVDYA
ASLPTNESYLQMKYATLPPEAESGASNGLAELERVFGDANANFLQQRSTP
VAGTATAYGHDGLNQAQRSRRPTQSESECSDIDCEHLDEDEEPPAAE*

IP14616.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:07:53
Subject Length Description Subject Range Query Range Score Percent Strand
lms-PC 378 CG13424-PC 1..378 20..397 1961 100 Plus
lms-PB 378 CG13424-PB 1..378 20..397 1961 100 Plus
B-H2-PA 645 CG5488-PA 278..642 19..396 242 26.9 Plus
B-H2-PB 303 CG5488-PB 13..300 80..396 231 28.1 Plus
NK7.1-PD 721 CG8524-PD 328..514 35..233 228 35 Plus