Clone IP15366 Report

Search the DGRC for IP15366

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:153
Well:66
Vector:pOT2
Associated Gene/TranscriptTrxr-1-RC
Protein status:IP15366.pep: gold
Sequenced Size:1973

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Trxr-1 2008-04-29 Release 5.5 accounting
Trxr-1 2008-08-15 Release 5.9 accounting
Trxr-1 2008-12-18 5.12 accounting

Clone Sequence Records

IP15366.complete Sequence

1973 bp (1973 high quality bases) assembled on 2006-04-12

GenBank Submission: BT025070

> IP15366.complete
TCATCGTCAATCGTCATCGCGCACCCGCTCCAACTGGAATTGTACAGTCG
GGGTCGCGCGAACAGCACTCGAAACTCGTATCATGCTGAAGTACATGATT
TGCGCCATCGTTGTGGGCGCCAAAAAGAGCACATCCTCTAAGTATAATGG
ATCCTACGACTACGACCTTATTGTGATTGGAGGCGGCTCAGCTGGCCTGG
CCTGCGCCAAGGAGGCAGTCCTCAATGGAGCCCGTGTGGCCTGTCTGGAT
TTCGTTAAGCCCACGCCCACTCTGGGCACCAAGTGGGGCGTTGGCGGCAC
CTGCGTGAACGTGGGCTGCATTCCCAAGAAGCTGATGCACCAGGCCTCCC
TTCTGGGCGAGGCTGTCCATGAGGCGGCCGCCTACGGCTGGAACGTGGAC
GAAAAGATCAAGCCAGACTGGCACAAGCTGGTGCAGTCCGTACAGAACCA
CATCAAGTCCGTCAACTGGGTGACCCGTGTGGATCTGCGCGACAAGAAAG
TGGAGTACATCAATGGACTGGGCTCCTTCGTGGACTCGCACACACTGCTG
GCCAAGCTGAAGAGCGGCGAGCGCACAATCACCGCCCAGACCTTCGTCAT
TGCCGTTGGCGGCCGACCACGTTATCCGGATATTCCCGGTGCTGTCGAGT
ATGGCATCACCAGCGATGATCTGTTCAGTTTGGACCGCGAGCCCGGCAAG
ACCCTGGTGGTGGGAGCTGGCTACATTGGCTTGGAGTGCGCTGGATTCCT
GAAGGGTCTCGGCTACGAGCCCACTGTGATGGTGCGTTCTATTGTGCTGC
GTGGCTTCGACCAGCAGATGGCCGAGCTGGTGGCAGCCTCGATGGAGGAG
CGTGGCATTCCCTTCCTCCGCAAGACGGTGCCGCTGTCCGTGGAAAAGCA
GGATGATGGCAAGCTGCTCGTGAAGTACAAGAACGTGGAGACCGGCGAGG
AGGCCGAGGATGTTTACGACACCGTTCTGTGGGCCATCGGCCGCAAGGGT
CTGGTGGACGATCTGAACCTGCCCAATGCCGGCGTGACTGTGCAGAAGGA
CAAGATTCCAGTGGACTCCCAGGAGGCTACCAATGTGGCAAACATCTACG
CTGTCGGCGATATCATCTATGGCAAGCCAGAGCTGACGCCCGTCGCCGTT
TTGGCTGGCCGTTTGCTGGCCCGCCGCCTGTACGGAGGATCTACCCAGCG
CATGGACTACAAGGATGTGGCCACCACCGTTTTCACGCCCCTGGAGTACG
CCTGCGTCGGCCTGAGCGAGGAGGATGCCGTCAAGCAGTTCGGAGCCGAT
GAGATCGAGGTGTTCCACGGCTACTACAAGCCCACGGAGTTCTTCATTCC
CCAGAAGAGCGTGCGCTACTGCTACTTGAAGGCTGTGGCCGAGCGCCATG
GTGACCAGCGCGTCTATGGACTGCACTATATTGGCCCGGTGGCCGGTGAG
GTTATCCAGGGATTCGCTGCCGCTTTGAAGTCTGGCCTGACTATTAACAC
GCTGATCAACACCGTGGGCATCCATCCCACTACCGCCGAAGAATTCACCC
GGCTGGCCATCACCAAGCGCTCCGGACTGGACCCCACGCCGGCCAGCTGC
TGCAGCTAAAGCGGGAACGCAGCTCAGCCGCCTGGGACGTGTCGAAGCCG
CTTGCTCCACCCGAAATCCCGTAGATGAATGGTTGTTGTCGCGGCCCAGC
GATCGATGAGTTCAATAGTTCCGTTTCGTTTCCACAATTAACACCCAACA
CAATAGCTCTGCGCAAGGGAGGGGCACTGGGCAGCGATGGCGGGTGGAAC
GACACCAGTGGAACTACCCGCGCGACCAGCCCAACCCACGACTGCTGCGC
CGCCGACATGCACTCAAAATTTTGAATTTGTTTGAACCTATGAAATTAAC
TATGAAATCCCCTAAATGTACGGTTGAAGAATATAATTTTTCACCAACAA
AAAAAAAAAAAAAAAAAAAAAAA

IP15366.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:28:56
Subject Length Description Subject Range Query Range Score Percent Strand
Trxr-1-RC 2004 Trxr-1-RC 34..1984 1..1951 9755 100 Plus
Trxr-1-RA 2330 Trxr-1-RA 395..2197 149..1951 9015 100 Plus
Trxr-1-RB 2433 Trxr-1-RB 498..2300 149..1951 9015 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:30:36
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 8138621..8139846 723..1948 6070 99.7 Plus
chrX 22417052 chrX 8137906..8138259 149..502 1695 98.6 Plus
chrX 22417052 chrX 8138323..8138549 496..722 1135 100 Plus
chr3L 24539361 chr3L 22539772..22540775 602..1605 955 73 Plus
chrX 22417052 chrX 8136162..8136311 1..150 750 100 Plus
chr3L 24539361 chr3L 22539318..22539672 154..508 715 81.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:24:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:30:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8246808..8248036 723..1951 6145 100 Plus
X 23542271 X 8246093..8246446 149..502 1755 99.7 Plus
X 23542271 X 8246510..8246736 496..722 1135 100 Plus
3L 28110227 3L 22550864..22551867 602..1605 955 73 Plus
X 23542271 X 8244349..8244498 1..150 750 100 Plus
3L 28110227 3L 22550410..22550764 154..508 715 81.3 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:20:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 8254906..8256134 723..1951 6145 100 Plus
X 23527363 X 8254191..8254544 149..502 1755 99.7 Plus
X 23527363 X 8254608..8254834 496..722 1135 100 Plus
X 23527363 X 8252447..8252596 1..150 750 100 Plus
3L 28103327 3L 22543964..22544229 602..867 490 78.9 Plus
3L 28103327 3L 22543626..22543755 273..402 455 90 Plus
3L 28103327 3L 22544779..22544967 1417..1605 330 78.3 Plus
3L 28103327 3L 22543768..22543864 412..508 320 88.6 Plus
3L 28103327 3L 22544666..22544754 1304..1392 310 89.8 Plus
Blast to na_te.dros performed on 2019-03-16 07:30:34 has no hits.

IP15366.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:31:26 Download gff for IP15366.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 8136162..8136310 1..149 100 -> Plus
chrX 8137907..8138252 150..495 98 -> Plus
chrX 8138323..8138549 496..722 100 -> Plus
chrX 8138621..8139846 723..1948 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:59:13 Download gff for IP15366.complete
Subject Subject Range Query Range Percent Splice Strand
Trxr-1-RC 1..1527 83..1609 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:51:19 Download gff for IP15366.complete
Subject Subject Range Query Range Percent Splice Strand
Trxr-1-RC 1..1527 83..1609 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:01:41 Download gff for IP15366.complete
Subject Subject Range Query Range Percent Splice Strand
Trxr-1-RC 1..1527 83..1609 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:32:00 Download gff for IP15366.complete
Subject Subject Range Query Range Percent Splice Strand
Trxr-1-RC 1..1527 83..1609 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:34:36 Download gff for IP15366.complete
Subject Subject Range Query Range Percent Splice Strand
Trxr-1-RC 1..1527 83..1609 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:25:12 Download gff for IP15366.complete
Subject Subject Range Query Range Percent Splice Strand
Trxr-1-RC 1..1910 39..1948 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:51:19 Download gff for IP15366.complete
Subject Subject Range Query Range Percent Splice Strand
Trxr-1-RC 1..1910 39..1948 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:01:41 Download gff for IP15366.complete
Subject Subject Range Query Range Percent Splice Strand
Trxr-1-RC 1..1911 38..1948 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:32:00 Download gff for IP15366.complete
Subject Subject Range Query Range Percent Splice Strand
Trxr-1-RC 1..1910 39..1948 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:34:36 Download gff for IP15366.complete
Subject Subject Range Query Range Percent Splice Strand
Trxr-1-RC 161..2108 1..1948 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:31:26 Download gff for IP15366.complete
Subject Subject Range Query Range Percent Splice Strand
X 8244349..8244497 1..149 100 -> Plus
X 8246094..8246439 150..495 100 -> Plus
X 8246510..8246736 496..722 100 -> Plus
X 8246808..8248033 723..1948 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:31:26 Download gff for IP15366.complete
Subject Subject Range Query Range Percent Splice Strand
X 8244349..8244497 1..149 100 -> Plus
X 8246094..8246439 150..495 100 -> Plus
X 8246510..8246736 496..722 100 -> Plus
X 8246808..8248033 723..1948 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:31:26 Download gff for IP15366.complete
Subject Subject Range Query Range Percent Splice Strand
X 8244349..8244497 1..149 100 -> Plus
X 8246094..8246439 150..495 100 -> Plus
X 8246510..8246736 496..722 100 -> Plus
X 8246808..8248033 723..1948 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:01:41 Download gff for IP15366.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8138382..8138530 1..149 100 -> Plus
arm_X 8140127..8140472 150..495 100 -> Plus
arm_X 8140543..8140769 496..722 100 -> Plus
arm_X 8140841..8142066 723..1948 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:10:32 Download gff for IP15366.complete
Subject Subject Range Query Range Percent Splice Strand
X 8254192..8254537 150..495 100 -> Plus
X 8254608..8254834 496..722 100 -> Plus
X 8254906..8256131 723..1948 100   Plus
X 8252447..8252595 1..149 100 -> Plus

IP15366.hyp Sequence

Translation from 0 to 1608

> IP15366.hyp
HRQSSSRTRSNWNCTVGVARTALETRIMLKYMICAIVVGAKKSTSSKYNG
SYDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGT
CVNVGCIPKKLMHQASLLGEAVHEAAAYGWNVDEKIKPDWHKLVQSVQNH
IKSVNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQTFVI
AVGGRPRYPDIPGAVEYGITSDDLFSLDREPGKTLVVGAGYIGLECAGFL
KGLGYEPTVMVRSIVLRGFDQQMAELVAASMEERGIPFLRKTVPLSVEKQ
DDGKLLVKYKNVETGEEAEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQKD
KIPVDSQEATNVANIYAVGDIIYGKPELTPVAVLAGRLLARRLYGGSTQR
MDYKDVATTVFTPLEYACVGLSEEDAVKQFGADEIEVFHGYYKPTEFFIP
QKSVRYCYLKAVAERHGDQRVYGLHYIGPVAGEVIQGFAAALKSGLTINT
LINTVGIHPTTAEEFTRLAITKRSGLDPTPASCCS*

IP15366.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:16:47
Subject Length Description Subject Range Query Range Score Percent Strand
Trxr-1-PC 508 CG2151-PC 1..508 28..535 2641 100 Plus
Trxr-1-PB 596 CG2151-PB 107..596 46..535 2532 99.4 Plus
Trxr-1-PA 491 CG2151-PA 6..491 50..535 2531 100 Plus
Trxr-2-PA 516 CG11401-PA 31..516 52..535 1979 76.8 Plus
CG7430-PB 504 CG7430-PB 12..487 18..513 402 28.1 Plus

IP15366.pep Sequence

Translation from 82 to 1608

> IP15366.pep
MLKYMICAIVVGAKKSTSSKYNGSYDYDLIVIGGGSAGLACAKEAVLNGA
RVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAA
YGWNVDEKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFV
DSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDIPGAVEYGITSDDLFSL
DREPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSIVLRGFDQQMAELV
AASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEEAEDVYDTVLW
AIGRKGLVDDLNLPNAGVTVQKDKIPVDSQEATNVANIYAVGDIIYGKPE
LTPVAVLAGRLLARRLYGGSTQRMDYKDVATTVFTPLEYACVGLSEEDAV
KQFGADEIEVFHGYYKPTEFFIPQKSVRYCYLKAVAERHGDQRVYGLHYI
GPVAGEVIQGFAAALKSGLTINTLINTVGIHPTTAEEFTRLAITKRSGLD
PTPASCCS*

IP15366.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:00:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19373-PA 537 GF19373-PA 52..537 23..508 2499 95.9 Plus
Dana\GF23459-PA 514 GF23459-PA 29..514 25..508 2046 77.2 Plus
Dana\GF24574-PA 504 GF24574-PA 32..489 21..488 403 30.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:00:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19308-PA 491 GG19308-PA 5..491 22..508 2535 97.5 Plus
Dere\GG16263-PA 518 GG16263-PA 31..518 25..508 2029 76.9 Plus
Dere\GG13635-PA 504 GG13635-PA 32..489 21..488 385 28.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:00:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12753-PA 596 GH12753-PA 112..596 23..508 2331 89.9 Plus
Dgri\GH16699-PA 514 GH16699-PA 20..514 15..508 1964 75.2 Plus
Dgri\GH17093-PA 504 GH17093-PA 32..489 21..488 395 30.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:35:11
Subject Length Description Subject Range Query Range Score Percent Strand
Trxr-1-PC 508 CG2151-PC 1..508 1..508 2641 100 Plus
Trxr-1-PB 596 CG2151-PB 107..596 19..508 2532 99.4 Plus
Trxr-1-PA 491 CG2151-PA 6..491 23..508 2531 100 Plus
Trxr-2-PA 516 CG11401-PA 31..516 25..508 1979 76.8 Plus
CG7430-PB 504 CG7430-PB 21..487 8..486 398 28 Plus
CG7430-PA 504 CG7430-PA 21..487 8..486 398 28 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:00:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15898-PA 601 GI15898-PA 117..601 23..508 2311 88.9 Plus
Dmoj\GI11388-PA 515 GI11388-PA 24..515 18..508 1953 75.5 Plus
Dmoj\GI11696-PA 504 GI11696-PA 21..489 8..488 398 29.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:00:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23230-PA 512 GL23230-PA 28..512 25..508 2024 77.2 Plus
Dper\GL22852-PA 504 GL22852-PA 32..489 21..488 389 29.7 Plus
Dper\GL14458-PA 65 GL14458-PA 6..64 23..82 151 56.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:00:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15270-PA 490 GA15270-PA 6..490 23..508 2393 92.2 Plus
Dpse\GA10979-PA 512 GA10979-PA 19..512 18..508 2000 76.4 Plus
Dpse\GA20345-PA 504 GA20345-PA 32..489 21..488 389 29.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:00:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22453-PA 516 GM22453-PA 31..516 25..508 2036 77.6 Plus
Dsec\GM11241-PA 268 GM11241-PA 5..197 22..214 1015 98.4 Plus
Dsec\GM25722-PA 504 GM25722-PA 32..489 21..488 382 28.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:00:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15034-PA 516 GD15034-PA 55..516 49..508 1907 76.5 Plus
Dsim\GD24769-PA 94 GD24769-PA 1..94 415..508 505 100 Plus
Dsim\GD14729-PA 504 GD14729-PA 32..489 21..488 379 28.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:00:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16646-PA 556 GJ16646-PA 72..556 23..508 2312 89.5 Plus
Dvir\GJ11643-PA 517 GJ11643-PA 24..517 16..508 1969 76.2 Plus
Dvir\GJ11371-PA 504 GJ11371-PA 21..489 8..488 392 29.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:00:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24920-PA 550 GK24920-PA 66..550 23..508 2366 90.5 Plus
Dwil\GK16764-PA 466 GK16764-PA 26..435 25..433 1667 75.7 Plus
Dwil\GK12667-PA 504 GK12667-PA 32..489 21..488 393 29.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:00:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15773-PA 491 GE15773-PA 5..491 22..508 2540 97.7 Plus
Dyak\GE23284-PA 516 GE23284-PA 31..516 25..508 2021 77 Plus
Dyak\GE19931-PA 504 GE19931-PA 32..489 21..488 388 28.4 Plus