IP15605.complete Sequence
1853 bp (1853 high quality bases) assembled on 2006-05-24
GenBank Submission: BT025859
> IP15605.complete
ATTTGAACCGCCTGTCAATCTGGATTAGACGCCACCTCGGTTCGCGTAAA
AGCTCGGCGGACACTTTGGTTCCTCATCGATCGCCATCTAACCATGTGTG
GTAGTGCTCTGTAGTGCAGGCTGCAAAATGGAAACACAGATGGGGCCGCG
TCTCTTTGACATTGCCATACTGACACTAAATATAAAACATTTCAAGTTAT
CCTAATATCTAAACAAGAAACCAAGAATCCCAGTTCAAAAGTCAGCAGCC
GAAAGATAGCAAACTGAAAGTGATATTCGAGTTGGGACAAGCGTTAAGTT
TGCACAAAAAGTTCAAAATGGAGTTTCTAATGAAAACGTCGCGTTTGATC
GTCACATCGAAGACGTTCGCAAGACGTGTGGCCGTTCCGATTCCCAGAAT
GGGTTCATTTAACTCGGCCCCAAAGATCAACAATGTGGACTCCCAGGACG
ATGGCCTGGTACTGCCCTCCGGTCTAAGCACCCCGGCTCTTCTCCAGCAT
GTCCAGCAACTGCGTGGCGGTGGCATCGAGCAGCCATCGCTGCTCACCCG
CGGCTTCCTAAAACCGCTGCTGGCGGACGAGGATGTAGCCGACGGACTGC
GATGCCTCAAGCTGAATTCCGTGTCGAGGGTTTGCAGTGCGCCAGTCGAG
GGTGATGACATTCGATTGCTGCAGTGGAACATCCTATCACAAACTCTCGG
GCAGCACAACGATGGATTTGTGCGCTGTCCCGAGGAGGCTCTCACCTGGG
AGCACCGCAAGTACCTGATTGTCCAGGAGATTCTGCAGAACCAGCCCGAT
GTGATTTGTCTGCAAGAGGTAGACCACTTCAAGTTTCTGCAGACCGTGTT
GGGTAGCCAGAACTACGCAGGCATCTTCTTCCCGAAACCGGATTCCCCGT
GCCTGTACATCGAGCAGAACAATGGACCCGATGGCTGTGCCATCTTCTAC
AAGAGGGACAAACTGCAGCTGCAGGGATACGATACGAGGATCCTGGAAGT
GTGGCGGGTGCAGAGCAACCAGGTGGCCATCGCGGCCCGGCTGCGTATGC
GATCCAGTGGTCGGGAATTCTGTGTGGCCACCACCCACTTAAAGGCCCGC
CATGGCGCCCTTTTGGCGAAATTACGGAACGAACAGGGACGTGATCTCAT
TAGGTTTGTGAAGCAGTTTGCCGGAGATACGCCGCTGCTGCTCTGCGGCG
ATTTCAATGCCGAACCGGTGGAGCCAATCTATGCCACGATCTTGGGATGT
GATCTCCTCCGCTTGGGCAGCGCCTATGCCGACGTGAAGCTAGACCGCGA
GGAGATACTACATCCCAACGCGGATGTCGGTGAGTTCGTCGCGAAATCGA
TGAAACGCGAGCCACCCTACACCACCTGGAAAATTCGCGAAGAGGGCGAG
GAATGTCACACCATCGACTACGTCTTTTACACACCCGATCGCCTCAAGAT
CAAAAACTGTCTAGACTTTCCGGCCGGAGAGCAAATTGGCAAGAATCGCA
CACCCAGCTTCCAATATCCATCGGATCACTTTTCCCTGGTGTGTGACTTT
GAGCTACTGCCTCCGACGGAAAACGGAAAGGAAAGCGGCAGCGGAAGTGG
GAGCGATGGTGAAAATGAAACGGAAGTGGAGGGCAGCAAGCATGGATCCA
TTCAATAGAAAGCTTCAGATTCATAATTTGCCGAAAAAGAAGTTTCAATA
ACATTACATCGATTGTGATATTAGTTGTTAGATACATATTAGCCTCATAC
ACAACCGTTGCACTACAGTTTGCAGCTTTTACAAATGATAATCCAAAATT
CACAATAAATAAATTACAACGTATGGAAGAAAGTTAAAAAAAAAAAAAAA
AAA
IP15605.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 17:16:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nocturnin-RE | 1924 | nocturnin-RE | 69..1905 | 1..1837 | 9125 | 99.7 | Plus |
nocturnin-RC | 1731 | nocturnin-RC | 269..1712 | 394..1837 | 7160 | 99.7 | Plus |
nocturnin-RD | 2221 | nocturnin-RD | 761..2202 | 396..1837 | 7150 | 99.7 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:44:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 7033132..7033764 | 816..1448 | 3165 | 100 | Plus |
chr3R | 27901430 | chr3R | 7033828..7034216 | 1447..1835 | 1945 | 100 | Plus |
chr3R | 27901430 | chr3R | 7030128..7030395 | 130..397 | 1340 | 100 | Plus |
chr3R | 27901430 | chr3R | 7032485..7032721 | 394..630 | 1170 | 99.6 | Plus |
chr3R | 27901430 | chr3R | 7026005..7026135 | 1..131 | 625 | 98.5 | Plus |
chr3R | 27901430 | chr3R | 7032943..7033065 | 694..816 | 615 | 100 | Plus |
chr3R | 27901430 | chr3R | 7032775..7032838 | 630..693 | 320 | 100 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:25:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:44:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11207549..11208181 | 816..1448 | 3120 | 99.5 | Plus |
3R | 32079331 | 3R | 11208245..11208635 | 1447..1837 | 1955 | 100 | Plus |
3R | 32079331 | 3R | 11204564..11204831 | 130..397 | 1340 | 100 | Plus |
3R | 32079331 | 3R | 11206902..11207138 | 394..630 | 1170 | 99.6 | Plus |
3R | 32079331 | 3R | 11200439..11200569 | 1..131 | 655 | 100 | Plus |
3R | 32079331 | 3R | 11207360..11207482 | 694..816 | 615 | 100 | Plus |
3R | 32079331 | 3R | 11207192..11207255 | 630..693 | 320 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:10:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 10948380..10949012 | 816..1448 | 3120 | 99.5 | Plus |
3R | 31820162 | 3R | 10949076..10949466 | 1447..1837 | 1955 | 100 | Plus |
3R | 31820162 | 3R | 10945395..10945662 | 130..397 | 1340 | 100 | Plus |
3R | 31820162 | 3R | 10947733..10947969 | 394..630 | 1170 | 99.5 | Plus |
3R | 31820162 | 3R | 10941270..10941400 | 1..131 | 655 | 100 | Plus |
3R | 31820162 | 3R | 10948191..10948313 | 694..816 | 615 | 100 | Plus |
3R | 31820162 | 3R | 10948023..10948086 | 630..693 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2019-03-15 21:44:26 has no hits.
IP15605.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:45:13 Download gff for
IP15605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 7030129..7030395 | 131..397 | 100 | -> | Plus |
chr3R | 7032489..7032721 | 398..630 | 99 | -> | Plus |
chr3R | 7032776..7032838 | 631..693 | 100 | -> | Plus |
chr3R | 7032943..7033064 | 694..815 | 100 | -> | Plus |
chr3R | 7026005..7026134 | 1..130 | 98 | -> | Plus |
chr3R | 7033132..7033764 | 816..1448 | 100 | -> | Plus |
chr3R | 7033830..7034216 | 1449..1835 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:59:40 Download gff for
IP15605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nocturnin-RE | 1..1341 | 318..1658 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:29:06 Download gff for
IP15605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cu-RE | 1..1341 | 318..1658 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:57:08 Download gff for
IP15605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cu-RE | 1..1341 | 318..1658 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:53:58 Download gff for
IP15605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nocturnin-RE | 1..1341 | 318..1658 | 99 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:01:55 Download gff for
IP15605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cu-RE | 1..1341 | 318..1658 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:00:35 Download gff for
IP15605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nocturnin-RE | 24..1856 | 1..1833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:29:06 Download gff for
IP15605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cu-RE | 24..1856 | 1..1833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:57:08 Download gff for
IP15605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cu-RE | 31..1865 | 1..1835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:53:58 Download gff for
IP15605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nocturnin-RE | 24..1856 | 1..1833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:55 Download gff for
IP15605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cu-RE | 31..1865 | 1..1835 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:45:13 Download gff for
IP15605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11200439..11200568 | 1..130 | 100 | -> | Plus |
3R | 11204565..11204831 | 131..397 | 100 | -> | Plus |
3R | 11206906..11207138 | 398..630 | 99 | -> | Plus |
3R | 11207193..11207255 | 631..693 | 100 | -> | Plus |
3R | 11207360..11207481 | 694..815 | 100 | -> | Plus |
3R | 11207549..11208181 | 816..1448 | 99 | -> | Plus |
3R | 11208247..11208633 | 1449..1835 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:45:13 Download gff for
IP15605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11200439..11200568 | 1..130 | 100 | -> | Plus |
3R | 11204565..11204831 | 131..397 | 100 | -> | Plus |
3R | 11206906..11207138 | 398..630 | 99 | -> | Plus |
3R | 11207193..11207255 | 631..693 | 100 | -> | Plus |
3R | 11207360..11207481 | 694..815 | 100 | -> | Plus |
3R | 11207549..11208181 | 816..1448 | 99 | -> | Plus |
3R | 11208247..11208633 | 1449..1835 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:45:13 Download gff for
IP15605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11200439..11200568 | 1..130 | 100 | -> | Plus |
3R | 11204565..11204831 | 131..397 | 100 | -> | Plus |
3R | 11206906..11207138 | 398..630 | 99 | -> | Plus |
3R | 11207193..11207255 | 631..693 | 100 | -> | Plus |
3R | 11207360..11207481 | 694..815 | 100 | -> | Plus |
3R | 11207549..11208181 | 816..1448 | 99 | -> | Plus |
3R | 11208247..11208633 | 1449..1835 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:57:08 Download gff for
IP15605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7032628..7032860 | 398..630 | 99 | -> | Plus |
arm_3R | 7032915..7032977 | 631..693 | 100 | -> | Plus |
arm_3R | 7033082..7033203 | 694..815 | 100 | -> | Plus |
arm_3R | 7026161..7026290 | 1..130 | 100 | -> | Plus |
arm_3R | 7030287..7030553 | 131..397 | 100 | -> | Plus |
arm_3R | 7033271..7033903 | 816..1448 | 99 | -> | Plus |
arm_3R | 7033969..7034355 | 1449..1835 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:55:11 Download gff for
IP15605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10941270..10941399 | 1..130 | 100 | -> | Plus |
3R | 10945396..10945662 | 131..397 | 100 | -> | Plus |
3R | 10947737..10947969 | 398..630 | 99 | -> | Plus |
3R | 10948024..10948086 | 631..693 | 100 | -> | Plus |
3R | 10948191..10948312 | 694..815 | 100 | -> | Plus |
3R | 10948380..10949012 | 816..1448 | 99 | -> | Plus |
3R | 10949078..10949464 | 1449..1835 | 100 | | Plus |
IP15605.hyp Sequence
Translation from 317 to 1657
> IP15605.hyp
MEFLMKTSRLIVTSKTFARRVAVPIPRMGSFNSAPKINNVDSQDDGLVLP
SGLSTPALLQHVQQLRGGGIEQPSLLTRGFLKPLLADEDVADGLRCLKLN
SVSRVCSAPVEGDDIRLLQWNILSQTLGQHNDGFVRCPEEALTWEHRKYL
IVQEILQNQPDVICLQEVDHFKFLQTVLGSQNYAGIFFPKPDSPCLYIEQ
NNGPDGCAIFYKRDKLQLQGYDTRILEVWRVQSNQVAIAARLRMRSSGRE
FCVATTHLKARHGALLAKLRNEQGRDLIRFVKQFAGDTPLLLCGDFNAEP
VEPIYATILGCDLLRLGSAYADVKLDREEILHPNADVGEFVAKSMKREPP
YTTWKIREEGEECHTIDYVFYTPDRLKIKNCLDFPAGEQIGKNRTPSFQY
PSDHFSLVCDFELLPPTENGKESGSGSGSDGENETEVEGSKHGSIQ*
IP15605.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:19:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cu-PE | 446 | CG31299-PE | 1..446 | 1..446 | 2353 | 100 | Plus |
cu-PG | 481 | CG31299-PG | 1..481 | 1..446 | 2301 | 92.5 | Plus |
cu-PC | 449 | CG31299-PC | 26..449 | 23..446 | 2231 | 99.3 | Plus |
cu-PD | 642 | CG31299-PD | 215..642 | 19..446 | 2229 | 98.4 | Plus |
cu-PF | 441 | CG31299-PF | 1..441 | 1..446 | 2228 | 95.1 | Plus |
IP15605.pep Sequence
Translation from 317 to 1657
> IP15605.pep
MEFLMKTSRLIVTSKTFARRVAVPIPRMGSFNSAPKINNVDSQDDGLVLP
SGLSTPALLQHVQQLRGGGIEQPSLLTRGFLKPLLADEDVADGLRCLKLN
SVSRVCSAPVEGDDIRLLQWNILSQTLGQHNDGFVRCPEEALTWEHRKYL
IVQEILQNQPDVICLQEVDHFKFLQTVLGSQNYAGIFFPKPDSPCLYIEQ
NNGPDGCAIFYKRDKLQLQGYDTRILEVWRVQSNQVAIAARLRMRSSGRE
FCVATTHLKARHGALLAKLRNEQGRDLIRFVKQFAGDTPLLLCGDFNAEP
VEPIYATILGCDLLRLGSAYADVKLDREEILHPNADVGEFVAKSMKREPP
YTTWKIREEGEECHTIDYVFYTPDRLKIKNCLDFPAGEQIGKNRTPSFQY
PSDHFSLVCDFELLPPTENGKESGSGSGSDGENETEVEGSKHGSIQ*
IP15605.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cu-PE | 446 | CG31299-PE | 1..446 | 1..446 | 2353 | 100 | Plus |
cu-PG | 481 | CG31299-PG | 1..481 | 1..446 | 2301 | 92.5 | Plus |
cu-PC | 449 | CG31299-PC | 26..449 | 23..446 | 2231 | 99.3 | Plus |
cu-PD | 642 | CG31299-PD | 215..642 | 19..446 | 2229 | 98.4 | Plus |
cu-PF | 441 | CG31299-PF | 1..441 | 1..446 | 2228 | 95.1 | Plus |
cu-PH | 419 | CG31299-PH | 1..419 | 28..446 | 2223 | 100 | Plus |
CG31759-PD | 564 | CG31759-PD | 233..560 | 111..412 | 213 | 27.6 | Plus |
CG31759-PC | 564 | CG31759-PC | 233..560 | 111..412 | 213 | 27.6 | Plus |
angel-PA | 354 | CG12273-PA | 62..354 | 109..414 | 209 | 26.3 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 12:49:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA16160-PC | 448 | GA16160-PC | 1..448 | 1..446 | 2073 | 86.1 | Plus |
Dpse\GA16160-PE | 451 | GA16160-PE | 20..451 | 15..446 | 1946 | 83.4 | Plus |
Dpse\GA16160-PD | 668 | GA16160-PD | 239..668 | 19..446 | 1945 | 83.9 | Plus |
Dpse\GA11525-PA | 359 | GA11525-PA | 69..267 | 115..308 | 172 | 31.3 | Plus |