Clone IP16020 Report

Search the DGRC for IP16020

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:160
Well:20
Vector:pOT2
Associated Gene/TranscriptPten-RB
Protein status:IP16020.pep: gold
Sequenced Size:2565

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Pten 2008-04-29 Release 5.5 accounting
Pten 2008-08-15 Release 5.9 accounting
Pten 2008-12-18 5.12 accounting

Clone Sequence Records

IP16020.complete Sequence

2565 bp (2565 high quality bases) assembled on 2006-04-13

GenBank Submission: BT025053

> IP16020.complete
ATTTAATAGAGCATGAGCGCTACTGTTTAACTTTTACACATAATTGAAAA
GTTTTATTTGAAATTTCGTGGCTTAGAGCAAAACATGTGATAGCTTTTTG
AAATGCAGTAGCCAGAACCTGCTCGGTTGGAACATTTAGCTTATTGACTT
AAACATACCCATATGCACATACATACATATGTATTAAACAGTGGGCACAT
ATATTCGTGTGGTGCTGATAGTGTAAATGTGTAAAATGTCTGTGGAATTG
TAAATATGTTTTTGTTTAAACAAATATGTACATAAATGCACAAAAATCGG
TGCATATATGTGCACATGCCCATCATCCATATCTGCATATTTCTGTACAT
GCATATGTGCTCTAACTACAATACATACCACCATTCGCAAACAGTTTGTC
AAAAAAGTGTGTCTACTCGGCGAGATAAAACAAAAAACAGTTGCCAAATC
AGTCGCTATGTTAAGTAATTCGAAATTACTGCTCGGTGTTTCTAAAACGG
ATTTTGATTTTGATTTTCACCCCTCGAAAATCGCCCCCTCAGCCAACGAA
CCCATTTAATTGCTCGAATTCGTATCGAAATCGCCGTGCGTTGGGCTTCA
ATAAAAGAACTCTGTTCTGTTAGCCAGTTACAATTAAAACCAGGACCATT
TGACAACCAATCTGAATGTATTATGCCAAGCGGAAGATTGTTATATTGTT
TATCTTTGATAATATGCCGATACATAACGTACACTTTGCAATGGAGTAAA
TAGAAGACAAGCACTGGTTCCCAAATACATTTGAATGGATGCAGCTAATC
TAATTTAAATAAAAAAGACAAGTCTTTAAACCTTAAAAATATGGCCAACA
CTATTTCGTTAATGTCCAACGTGATACGCAATGTAGTGAGTAAAAAACGT
ATACGATACAAAGAAAAAGGATACGATTTGGATTTAACATACATTAATGA
TAACATAATTGCCATGGGCTATCCAGCACCGGATAAACTAGAGGGCCTAT
TCAGAAACCGTCTGGAAGATGTCTTTAAGCTATTGGAAGAGAATCATGCC
CAGCATTACAAAATCTATAACCTATGCTCGGAGCGTAGTTACGACGTTGC
TAAATTTCGCGGGAGAGTAGCTGTTTATCCGTTCGATGATCATAACCCTC
CAACGATTGAGTTAATACAACGATTTTGCAGTGATGTTGATATGTGGCTC
AAGGAAGATTCGTCCAATGTTGTAGCCGTGCACTGTAAAGCTGGAAAGGG
CAGAACCGGTACCATGATCTGCGCATATTTAGTGTTCAGTGGAATTAAAA
AATCCGCCGACGAGGCATTAGCGTGGTATGATGAGAAGCGTACAAAGGAC
CGAAAAGGTGTGACAATCCCATCTCAGCGTCGATATGTTCAGTATTTTTC
CAAACTAGTTTGTTCAAGTGTTCCATATTCGAAAGTAAGCCTTAACGTAT
GTGAAATACGCTTCTCGGAGTCCAGTTGTGTGCAAAACTTAGGCATGGTA
GAATGTTCAATATCTGTATTACACGACTCAGCCACAGAAAATGCAAAGCC
AGATAGACTGAAAACCTTGCCGATTGATTTTCAAAAATCATTTGTTTTGA
CCATTAAACCATCAATACCAGTTTCCGGCGATGTAAAATTTGAACTCACA
AAAAAATCCCCAGATAAAATCATTTGTCACTTTTGGCTAAATACGTTTTT
TGTACGAAACTATTCACCTTGCGAGTCCGATGGAACAGTTAACAAATATA
TACACACTTTAAGCAAATCAGAAATCGATGATGTACATAAAGACAGTGAA
CATAAAAGATTTTCAGAAGAATTCAAGATTTCAATCGTTTTTGAGGCAGA
GAATTTTAGCAATGATGTTCAAGCTGAAGCGTCCGAAAAAGAGAGAAACG
AAAATGTTTTAAATTTCGAAAGATCAGACTATGACAGTTTGTCTCCAAAC
TGCTATGCCGAAAAAAAAGTCTTAACTGCGATCGTCAATGATAATACAAC
GAAAAGTCAAACAATAGAAACGTTGGATCATAAGGATATAGTTACTAAAA
TTCAATACGACACATCAACCAATTCAAAAAATACTTCGACTGCGTGCAAA
CGCAAACAGCCTAATAGCAAAACTCTTTTACCAAGCTTGAATGATTCCAC
AAAAGAGGAAATAAAACGAAATCATATATTTAATCAACCGTCCATTAAGA
AAACTGATTTAATCAAATGGCAGAATAGTGAAGTTCATATCACCTCTGAC
ACTCGAAGTATAAACGAAAATAAGAACATCAATTACAATTCATACATCAC
ATGTAAACAATCCTCTCCAAAATTCAACTGTGGTACCGAAGATGGCGAGG
AAGATTGGGAATCCGGTGAATCAACATACCTGTAATCAATGCTTATTACG
GACTTATAATTCTTGGTGATTTAGCAAAGTAATTAAAATTGCTAAGTAAT
TGGCTAATCTATTCGAATTTGTAAATATACTGTATGATATTTATTTAAGT
AGTTTTAACAATTATTTTAAATAAACTCATGTACATTTTGTATTGTAAAA
AAAAAAAAAAAAAAA

IP16020.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:28:35
Subject Length Description Subject Range Query Range Score Percent Strand
Pten-RG 2754 Pten-RG 151..2697 1..2547 12735 100 Plus
Pten-RH 2449 Pten-RH 291..2443 395..2547 10765 100 Plus
Pten.b 2677 Pten.b 305..2275 395..2365 9855 100 Plus
Pten.b 2677 Pten.b 68..304 1..237 1185 100 Plus
Pten-RH 2449 Pten-RH 54..290 1..237 1185 100 Plus
Pten.b 2677 Pten.b 2488..2670 2365..2547 915 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:54:37
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 10259110..10259834 725..1 3625 100 Minus
chr2L 23010047 chr2L 10256247..10256572 2369..2044 1630 100 Minus
chr2L 23010047 chr2L 10256634..10256851 2043..1826 1090 100 Minus
chr2L 23010047 chr2L 10258332..10258546 940..726 1075 100 Minus
chr2L 23010047 chr2L 10257582..10257772 1448..1258 955 100 Minus
chr2L 23010047 chr2L 10255182..10255363 2546..2365 910 100 Minus
chr2L 23010047 chr2L 10258097..10258273 1113..937 870 99.4 Minus
chr2L 23010047 chr2L 10257091..10257253 1717..1555 815 100 Minus
chr2L 23010047 chr2L 10257882..10258030 1261..1113 745 100 Minus
chr2L 23010047 chr2L 10256920..10257029 1827..1718 550 100 Minus
chr2L 23010047 chr2L 10257405..10257512 1554..1447 540 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:26:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:54:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10260254..10260978 725..1 3625 100 Minus
2L 23513712 2L 10257391..10257716 2369..2044 1630 100 Minus
2L 23513712 2L 10257778..10257995 2043..1826 1090 100 Minus
2L 23513712 2L 10259476..10259690 940..726 1075 100 Minus
2L 23513712 2L 10258726..10258916 1448..1258 955 100 Minus
2L 23513712 2L 10256325..10256507 2547..2365 915 100 Minus
2L 23513712 2L 10259241..10259417 1113..937 870 99.4 Minus
2L 23513712 2L 10258235..10258397 1717..1555 815 100 Minus
2L 23513712 2L 10259026..10259174 1261..1113 745 100 Minus
2L 23513712 2L 10258064..10258173 1827..1718 550 100 Minus
2L 23513712 2L 10258549..10258656 1554..1447 540 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:19:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10260254..10260978 725..1 3625 100 Minus
2L 23513712 2L 10257391..10257716 2369..2044 1630 100 Minus
2L 23513712 2L 10257778..10257995 2043..1826 1090 100 Minus
2L 23513712 2L 10259476..10259690 940..726 1075 100 Minus
2L 23513712 2L 10258726..10258916 1448..1258 955 100 Minus
2L 23513712 2L 10256325..10256507 2547..2365 915 100 Minus
2L 23513712 2L 10259241..10259417 1113..937 870 99.4 Minus
2L 23513712 2L 10258235..10258397 1717..1555 815 100 Minus
2L 23513712 2L 10259026..10259174 1261..1113 745 100 Minus
2L 23513712 2L 10258064..10258173 1827..1718 550 100 Minus
2L 23513712 2L 10258549..10258656 1554..1447 540 100 Minus
Blast to na_te.dros performed on 2019-03-16 23:54:35 has no hits.

IP16020.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:55:29 Download gff for IP16020.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 10255182..10255362 2366..2546 100 <- Minus
chr2L 10256251..10256572 2044..2365 100 <- Minus
chr2L 10256634..10256849 1828..2043 100 <- Minus
chr2L 10256920..10257029 1718..1827 100 <- Minus
chr2L 10257091..10257253 1555..1717 100 <- Minus
chr2L 10257405..10257512 1447..1554 100 <- Minus
chr2L 10257584..10257771 1259..1446 100 <- Minus
chr2L 10257885..10258029 1114..1258 100 <- Minus
chr2L 10258097..10258269 941..1113 100 <- Minus
chr2L 10258332..10258546 726..940 100 <- Minus
chr2L 10259110..10259834 1..725 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:01:30 Download gff for IP16020.complete
Subject Subject Range Query Range Percent Splice Strand
Pten-RB 1..1545 841..2385 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:50:51 Download gff for IP16020.complete
Subject Subject Range Query Range Percent Splice Strand
Pten-RG 1..1545 841..2385 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:53:02 Download gff for IP16020.complete
Subject Subject Range Query Range Percent Splice Strand
Pten-RB 1..1545 841..2385 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:31:34 Download gff for IP16020.complete
Subject Subject Range Query Range Percent Splice Strand
Pten-RB 1..1545 841..2385 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:03:20 Download gff for IP16020.complete
Subject Subject Range Query Range Percent Splice Strand
Pten-RB 1..1545 841..2385 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:24:34 Download gff for IP16020.complete
Subject Subject Range Query Range Percent Splice Strand
Pten-RB 164..2316 394..2546 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:50:51 Download gff for IP16020.complete
Subject Subject Range Query Range Percent Splice Strand
Pten-RG 1..2546 1..2546 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:53:02 Download gff for IP16020.complete
Subject Subject Range Query Range Percent Splice Strand
Pten-RG 72..2617 1..2546 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:31:34 Download gff for IP16020.complete
Subject Subject Range Query Range Percent Splice Strand
Pten-RB 164..2316 394..2546 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:03:20 Download gff for IP16020.complete
Subject Subject Range Query Range Percent Splice Strand
Pten-RG 72..2617 1..2546 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:55:29 Download gff for IP16020.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10259029..10259173 1114..1258 100 <- Minus
2L 10259241..10259413 941..1113 100 <- Minus
2L 10258728..10258915 1259..1446 100 <- Minus
2L 10256326..10256506 2366..2546 100 <- Minus
2L 10257395..10257716 2044..2365 100 <- Minus
2L 10257778..10257993 1828..2043 100 <- Minus
2L 10258064..10258173 1718..1827 100 <- Minus
2L 10258235..10258397 1555..1717 100 <- Minus
2L 10258549..10258656 1447..1554 100 <- Minus
2L 10259476..10259690 726..940 100 <- Minus
2L 10260254..10260978 1..725 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:55:29 Download gff for IP16020.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10259029..10259173 1114..1258 100 <- Minus
2L 10259241..10259413 941..1113 100 <- Minus
2L 10258728..10258915 1259..1446 100 <- Minus
2L 10256326..10256506 2366..2546 100 <- Minus
2L 10257395..10257716 2044..2365 100 <- Minus
2L 10257778..10257993 1828..2043 100 <- Minus
2L 10258064..10258173 1718..1827 100 <- Minus
2L 10258235..10258397 1555..1717 100 <- Minus
2L 10258549..10258656 1447..1554 100 <- Minus
2L 10259476..10259690 726..940 100 <- Minus
2L 10260254..10260978 1..725 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:55:29 Download gff for IP16020.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10259029..10259173 1114..1258 100 <- Minus
2L 10259241..10259413 941..1113 100 <- Minus
2L 10258728..10258915 1259..1446 100 <- Minus
2L 10256326..10256506 2366..2546 100 <- Minus
2L 10257395..10257716 2044..2365 100 <- Minus
2L 10257778..10257993 1828..2043 100 <- Minus
2L 10258064..10258173 1718..1827 100 <- Minus
2L 10258235..10258397 1555..1717 100 <- Minus
2L 10258549..10258656 1447..1554 100 <- Minus
2L 10259476..10259690 726..940 100 <- Minus
2L 10260254..10260978 1..725 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:53:02 Download gff for IP16020.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10258235..10258397 1555..1717 100 <- Minus
arm_2L 10258549..10258656 1447..1554 100 <- Minus
arm_2L 10258728..10258915 1259..1446 100 <- Minus
arm_2L 10259029..10259173 1114..1258 100 <- Minus
arm_2L 10259241..10259413 941..1113 100 <- Minus
arm_2L 10257778..10257993 1828..2043 100 <- Minus
arm_2L 10258064..10258173 1718..1827 100 <- Minus
arm_2L 10256326..10256506 2366..2546 100 <- Minus
arm_2L 10257395..10257716 2044..2365 100 <- Minus
arm_2L 10259476..10259690 726..940 100 <- Minus
arm_2L 10260254..10260978 1..725 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:10:03 Download gff for IP16020.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10257395..10257716 2044..2365 100 <- Minus
2L 10257778..10257993 1828..2043 100 <- Minus
2L 10258064..10258173 1718..1827 100 <- Minus
2L 10258235..10258397 1555..1717 100 <- Minus
2L 10258549..10258656 1447..1554 100 <- Minus
2L 10258728..10258915 1259..1446 100 <- Minus
2L 10259029..10259173 1114..1258 100 <- Minus
2L 10259241..10259413 941..1113 100 <- Minus
2L 10259476..10259690 726..940 100 <- Minus
2L 10260254..10260978 1..725 100   Minus
2L 10256326..10256506 2366..2546 100 <- Minus

IP16020.pep Sequence

Translation from 840 to 2384

> IP16020.pep
MANTISLMSNVIRNVVSKKRIRYKEKGYDLDLTYINDNIIAMGYPAPDKL
EGLFRNRLEDVFKLLEENHAQHYKIYNLCSERSYDVAKFRGRVAVYPFDD
HNPPTIELIQRFCSDVDMWLKEDSSNVVAVHCKAGKGRTGTMICAYLVFS
GIKKSADEALAWYDEKRTKDRKGVTIPSQRRYVQYFSKLVCSSVPYSKVS
LNVCEIRFSESSCVQNLGMVECSISVLHDSATENAKPDRLKTLPIDFQKS
FVLTIKPSIPVSGDVKFELTKKSPDKIICHFWLNTFFVRNYSPCESDGTV
NKYIHTLSKSEIDDVHKDSEHKRFSEEFKISIVFEAENFSNDVQAEASEK
ERNENVLNFERSDYDSLSPNCYAEKKVLTAIVNDNTTKSQTIETLDHKDI
VTKIQYDTSTNSKNTSTACKRKQPNSKTLLPSLNDSTKEEIKRNHIFNQP
SIKKTDLIKWQNSEVHITSDTRSINENKNINYNSYITCKQSSPKFNCGTE
DGEEDWESGESTYL*

IP16020.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 13:57:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14124-PA 512 GF14124-PA 1..512 1..514 2258 82.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 13:57:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23962-PA 514 GG23962-PA 1..514 1..514 2491 89.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 13:57:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13854-PA 475 GH13854-PA 1..466 1..511 1302 53.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:45
Subject Length Description Subject Range Query Range Score Percent Strand
Pten-PH 514 CG5671-PH 1..514 1..514 2703 100 Plus
Pten-PG 514 CG5671-PG 1..514 1..514 2703 100 Plus
Pten-PB 514 CG5671-PB 1..514 1..514 2703 100 Plus
Pten-PD 514 CG5671-PD 1..514 1..514 2703 100 Plus
Pten-PA 509 CG5671-PA 1..508 1..508 2672 100 Plus
Pten-PE 509 CG5671-PE 1..508 1..508 2672 100 Plus
Pten-PC 418 CG5671-PC 1..401 1..401 2099 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 13:57:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18266-PA 611 GI18266-PA 1..526 1..508 1319 53.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 13:57:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19174-PA 546 GL19174-PA 1..460 1..511 1620 63.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 13:57:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19047-PA 480 GA19047-PA 1..464 1..510 1639 63.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 13:57:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11890-PA 514 GM11890-PA 1..514 1..514 2632 95.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 13:57:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22287-PA 443 GD22287-PA 21..443 92..514 2175 96 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 13:57:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17528-PA 571 GJ17528-PA 1..535 1..512 1395 55.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 13:57:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15265-PA 547 GK15265-PA 1..529 1..512 1498 58.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 13:57:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26252-PA 515 GE26252-PA 1..515 1..514 2519 91.3 Plus

IP16020.hyp Sequence

Translation from 840 to 2384

> IP16020.hyp
MANTISLMSNVIRNVVSKKRIRYKEKGYDLDLTYINDNIIAMGYPAPDKL
EGLFRNRLEDVFKLLEENHAQHYKIYNLCSERSYDVAKFRGRVAVYPFDD
HNPPTIELIQRFCSDVDMWLKEDSSNVVAVHCKAGKGRTGTMICAYLVFS
GIKKSADEALAWYDEKRTKDRKGVTIPSQRRYVQYFSKLVCSSVPYSKVS
LNVCEIRFSESSCVQNLGMVECSISVLHDSATENAKPDRLKTLPIDFQKS
FVLTIKPSIPVSGDVKFELTKKSPDKIICHFWLNTFFVRNYSPCESDGTV
NKYIHTLSKSEIDDVHKDSEHKRFSEEFKISIVFEAENFSNDVQAEASEK
ERNENVLNFERSDYDSLSPNCYAEKKVLTAIVNDNTTKSQTIETLDHKDI
VTKIQYDTSTNSKNTSTACKRKQPNSKTLLPSLNDSTKEEIKRNHIFNQP
SIKKTDLIKWQNSEVHITSDTRSINENKNINYNSYITCKQSSPKFNCGTE
DGEEDWESGESTYL*

IP16020.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:25:30
Subject Length Description Subject Range Query Range Score Percent Strand
Pten-PH 514 CG5671-PH 1..514 1..514 2703 100 Plus
Pten-PG 514 CG5671-PG 1..514 1..514 2703 100 Plus
Pten-PB 514 CG5671-PB 1..514 1..514 2703 100 Plus
Pten-PD 514 CG5671-PD 1..514 1..514 2703 100 Plus
Pten-PA 509 CG5671-PA 1..508 1..508 2672 100 Plus