Clone IP16206 Report

Search the DGRC for IP16206

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:162
Well:6
Vector:pOT2
Associated Gene/TranscriptST6Gal-RA
Protein status:IP16206.pep: gold
Sequenced Size:1602

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
ST6Gal 2008-04-29 Release 5.5 accounting
ST6Gal 2008-08-15 Release 5.9 accounting
ST6Gal 2008-12-18 5.12 accounting

Clone Sequence Records

IP16206.complete Sequence

1602 bp (1602 high quality bases) assembled on 2005-11-21

GenBank Submission: BT024241

> IP16206.complete
GAAAGTTCGAACTGCGGACGCGTCGCCGGAAAATCCTTCGCTTTTCCGGC
TGCTTTTCCGAGTTTTGCGGGCTGCATGTGAACGCACTGTCGCGTATTAT
GAGTGGAGAATGAGGCAAGTGACACGCGCATCGTCGGGTCAAAGTCAGGC
CCTCCTTTCATGCCTCATTATCGCCGTGTGCGCCGCATTAATAATTCAAT
CTGGGCATATCCAGGGTGTGAAAGCTCAGCCGGGACGCGAACCCGGCGAG
GTGAATTCGCGGCAGCCCGGCAACGGAAATGGGACCACTGGCCACCGCGT
GCCGCGCAGTGTGTTCCACGTGCGCTGGAACCCCAACGAGAAGTTCATCG
TGGAGAGTCGCGAGAATCCGGCCATCAACTCGTCCAAGCTGGCTCCGCAT
CCCCGACTCAAGGTCTCGAAGAACACCAAGCTCACGCTGAGCCCCAAGCT
GTATCTCTGCCACGACAAGCACTCGGAGCTGTGCCACAACAAGACCCAGC
AGTTTCGCCAGCGCATTGTCCGGGCCTTCGAGAAGGCCATGGTGGAGTCG
GTAAACGAGTCGCAGGCGAACCACTACAACGTGGACTACAAGCCCGTCTT
TGGGGACAGCTTCGAGGAGCAGTACTACCCCTCGACCTGCCTGGTCATGG
AGGCGGGCGTGCGGGTCCTGCGCCGCAAGGACGCGCCCTTCAACAAACTG
CCCTTCGGCCGGCTCTTTCCGCGTCAAAAGCTCTTCCGCAACGTCAAAGA
CATCAAGACCTGCGCCATCGTCTCCAGTGCGGGATCCTTGGCTGGCTCCA
AGTTAGGCCGCTTCATTGACACGCACGACATTGTGATGAGATTCAATCAT
GCGCCCACGCAAGGACACGAGGTGGATGTTGGCAGCAAAACCACGATCCG
TGTGGTGAATTCGCAAGTGGTCACCAAGCCGGAATTCGACTTCACCCGAG
CCCCCATCTTCCGGAACGTCACGATCGCCGCCTGGGATCCGGGCAAGTAC
AATGGCACACTGGAGGATTGGCTCACTAGCGCTGACTACGACCTCTTTTC
CAACTACGAGCTGTACAGGCGGCGCTATCCGAAGTCACGTGCCTTCCTCA
TCGATCCCCACTCCGTGTGGCGCCTGTGGCAGAGTCTGCAGATGTTTGCC
GGAAACCGGCCGATAAGCAAGAATCCCCCCAGTTCCGGTTTTATAGGACT
GGCCCTGCTCCTGCCGCACTGTCCCCAGGTGGACTTCGTGGAGTACGTGC
CGTCCACACGACTCAATGGACGCTGTCACTACTACAGCAAAGAGATGAAT
TCCGCCTGCACATTCGGCTCCTGGCATCCGCTGGCCGCCGAGAAGCTGAT
GGCCCTGGACATGAACATGGCGGAGGACGACGACATGTCGGTCTTCCAGT
TCGGCATCCTGCGGATTCGCCGGCCGGACAAACTGCTCTGCGGCTTCAAC
TTCTTTGGCTACTGAAGAGGAGCGCGATTCCCAGTTGCCAGTTCGCAGTT
TGCAGGCGGAAGTGGCAGTGACAAACCAGGTGCATTTAATCAAGTGGTTT
TCATCGAGTGCAATAAACAATTCAACTTTGCAATGAAAAAAAAAAAAAAA
AA

IP16206.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:25:46
Subject Length Description Subject Range Query Range Score Percent Strand
ST6Gal.a 1601 ST6Gal.a 9..1595 1..1587 7935 100 Plus
ST6Gal.b 1868 ST6Gal.b 287..1782 92..1587 7480 100 Plus
ST6Gal.d 2203 ST6Gal.d 650..2145 92..1587 7480 100 Plus
ST6Gal.b 1868 ST6Gal.b 9..100 1..92 460 100 Plus
ST6Gal.d 2203 ST6Gal.d 8..99 1..92 460 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:59:15
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 20578575..20579118 818..275 2705 99.8 Minus
chr2R 21145070 chr2R 20577322..20577614 1585..1293 1450 99.7 Minus
chr2R 21145070 chr2R 20577880..20578160 1197..917 1360 98.9 Minus
chr2R 21145070 chr2R 20579186..20579370 276..92 925 100 Minus
chr2R 21145070 chr2R 20578221..20578321 918..818 505 100 Minus
chr2R 21145070 chr2R 20577676..20577775 1294..1195 500 100 Minus
chr2R 21145070 chr2R 20580171..20580262 92..1 460 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:27:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:59:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24692675..24693218 818..275 2720 100 Minus
2R 25286936 2R 24691420..24691714 1587..1293 1475 100 Minus
2R 25286936 2R 24691980..24692260 1197..917 1405 100 Minus
2R 25286936 2R 24693286..24693470 276..92 925 100 Minus
2R 25286936 2R 24692321..24692421 918..818 505 100 Minus
2R 25286936 2R 24691776..24691875 1294..1195 500 100 Minus
2R 25286936 2R 24694271..24694362 92..1 460 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:17:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 24693874..24694417 818..275 2720 100 Minus
2R 25260384 2R 24692619..24692913 1587..1293 1475 100 Minus
2R 25260384 2R 24693179..24693459 1197..917 1405 100 Minus
2R 25260384 2R 24694485..24694669 276..92 925 100 Minus
2R 25260384 2R 24693520..24693620 918..818 505 100 Minus
2R 25260384 2R 24692975..24693074 1294..1195 500 100 Minus
2R 25260384 2R 24695470..24695561 92..1 460 100 Minus
Blast to na_te.dros performed on 2019-03-16 02:59:14 has no hits.

IP16206.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:59:56 Download gff for IP16206.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 20577322..20577612 1295..1585 99 <- Minus
chr2R 20577676..20577773 1197..1294 100 <- Minus
chr2R 20577881..20578160 917..1196 98 <- Minus
chr2R 20578223..20578320 819..916 100 <- Minus
chr2R 20578575..20579117 276..818 99 <- Minus
chr2R 20579187..20579369 93..275 100 <- Minus
chr2R 20580171..20580262 1..92 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:02:48 Download gff for IP16206.complete
Subject Subject Range Query Range Percent Splice Strand
ST6Gal-RA 1..1356 110..1465 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:45:53 Download gff for IP16206.complete
Subject Subject Range Query Range Percent Splice Strand
ST6Gal-RA 1..1356 110..1465 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:25:29 Download gff for IP16206.complete
Subject Subject Range Query Range Percent Splice Strand
ST6Gal-RA 1..1356 110..1465 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:27:24 Download gff for IP16206.complete
Subject Subject Range Query Range Percent Splice Strand
ST6Gal-RA 1..1356 110..1465 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:28:06 Download gff for IP16206.complete
Subject Subject Range Query Range Percent Splice Strand
ST6Gal-RA 1..1356 110..1465 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:19:12 Download gff for IP16206.complete
Subject Subject Range Query Range Percent Splice Strand
ST6Gal-RA 75..1572 86..1585 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:45:53 Download gff for IP16206.complete
Subject Subject Range Query Range Percent Splice Strand
ST6Gal-RA 75..1572 86..1585 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:25:29 Download gff for IP16206.complete
Subject Subject Range Query Range Percent Splice Strand
ST6Gal-RA 25..1609 1..1585 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:27:24 Download gff for IP16206.complete
Subject Subject Range Query Range Percent Splice Strand
ST6Gal-RA 75..1572 86..1585 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:28:06 Download gff for IP16206.complete
Subject Subject Range Query Range Percent Splice Strand
ST6Gal-RA 25..1609 1..1585 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:59:56 Download gff for IP16206.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24691981..24692260 917..1196 100 <- Minus
2R 24692323..24692420 819..916 100 <- Minus
2R 24691422..24691712 1295..1585 100 <- Minus
2R 24691776..24691873 1197..1294 100 <- Minus
2R 24692675..24693217 276..818 100 <- Minus
2R 24693287..24693469 93..275 100 <- Minus
2R 24694271..24694362 1..92 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:59:56 Download gff for IP16206.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24691981..24692260 917..1196 100 <- Minus
2R 24692323..24692420 819..916 100 <- Minus
2R 24691422..24691712 1295..1585 100 <- Minus
2R 24691776..24691873 1197..1294 100 <- Minus
2R 24692675..24693217 276..818 100 <- Minus
2R 24693287..24693469 93..275 100 <- Minus
2R 24694271..24694362 1..92 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:59:56 Download gff for IP16206.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24691981..24692260 917..1196 100 <- Minus
2R 24692323..24692420 819..916 100 <- Minus
2R 24691422..24691712 1295..1585 100 <- Minus
2R 24691776..24691873 1197..1294 100 <- Minus
2R 24692675..24693217 276..818 100 <- Minus
2R 24693287..24693469 93..275 100 <- Minus
2R 24694271..24694362 1..92 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:29 Download gff for IP16206.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20580810..20580992 93..275 100 <- Minus
arm_2R 20581794..20581885 1..92 100   Minus
arm_2R 20578945..20579235 1295..1585 100 <- Minus
arm_2R 20579299..20579396 1197..1294 100 <- Minus
arm_2R 20579504..20579783 917..1196 100 <- Minus
arm_2R 20579846..20579943 819..916 100 <- Minus
arm_2R 20580198..20580740 276..818 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:06:28 Download gff for IP16206.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24693540..24693637 819..916 100 <- Minus
2R 24692993..24693090 1197..1294 100 <- Minus
2R 24693198..24693477 917..1196 100 <- Minus
2R 24692639..24692929 1295..1585 100 <- Minus
2R 24693892..24694434 276..818 100 <- Minus
2R 24694504..24694686 93..275 100 <- Minus
2R 24695488..24695579 1..92 100   Minus

IP16206.hyp Sequence

Translation from 0 to 1464

> IP16206.hyp
KVRTADASPENPSLFRLLFRVLRAACERTVAYYEWRMRQVTRASSGQSQA
LLSCLIIAVCAALIIQSGHIQGVKAQPGREPGEVNSRQPGNGNGTTGHRV
PRSVFHVRWNPNEKFIVESRENPAINSSKLAPHPRLKVSKNTKLTLSPKL
YLCHDKHSELCHNKTQQFRQRIVRAFEKAMVESVNESQANHYNVDYKPVF
GDSFEEQYYPSTCLVMEAGVRVLRRKDAPFNKLPFGRLFPRQKLFRNVKD
IKTCAIVSSAGSLAGSKLGRFIDTHDIVMRFNHAPTQGHEVDVGSKTTIR
VVNSQVVTKPEFDFTRAPIFRNVTIAAWDPGKYNGTLEDWLTSADYDLFS
NYELYRRRYPKSRAFLIDPHSVWRLWQSLQMFAGNRPISKNPPSSGFIGL
ALLLPHCPQVDFVEYVPSTRLNGRCHYYSKEMNSACTFGSWHPLAAEKLM
ALDMNMAEDDDMSVFQFGILRIRRPDKLLCGFNFFGY*

IP16206.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:19:39
Subject Length Description Subject Range Query Range Score Percent Strand
ST6Gal-PA 451 CG4871-PA 1..451 37..487 2405 100 Plus
ST6Gal-PB 474 CG4871-PB 1..474 37..487 2371 95.1 Plus

IP16206.pep Sequence

Translation from 109 to 1464

> IP16206.pep
MRQVTRASSGQSQALLSCLIIAVCAALIIQSGHIQGVKAQPGREPGEVNS
RQPGNGNGTTGHRVPRSVFHVRWNPNEKFIVESRENPAINSSKLAPHPRL
KVSKNTKLTLSPKLYLCHDKHSELCHNKTQQFRQRIVRAFEKAMVESVNE
SQANHYNVDYKPVFGDSFEEQYYPSTCLVMEAGVRVLRRKDAPFNKLPFG
RLFPRQKLFRNVKDIKTCAIVSSAGSLAGSKLGRFIDTHDIVMRFNHAPT
QGHEVDVGSKTTIRVVNSQVVTKPEFDFTRAPIFRNVTIAAWDPGKYNGT
LEDWLTSADYDLFSNYELYRRRYPKSRAFLIDPHSVWRLWQSLQMFAGNR
PISKNPPSSGFIGLALLLPHCPQVDFVEYVPSTRLNGRCHYYSKEMNSAC
TFGSWHPLAAEKLMALDMNMAEDDDMSVFQFGILRIRRPDKLLCGFNFFG
Y*

IP16206.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 13:41:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\ST6Gal-PA 444 GF11909-PA 1..444 1..451 2156 89.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 13:41:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\ST6Gal-PA 451 GG19899-PA 1..451 1..451 2383 96.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 13:41:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\ST6Gal-PA 458 GH21565-PA 74..458 63..451 1940 91.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:52:45
Subject Length Description Subject Range Query Range Score Percent Strand
SiaT-PA 451 CG4871-PA 1..451 1..451 2405 100 Plus
SiaT-PB 474 CG4871-PB 1..474 1..451 2371 95.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 13:41:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\ST6Gal-PA 458 GI19537-PA 40..458 35..451 1932 84.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 13:41:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\ST6Gal-PA 452 GL17166-PA 1..452 1..451 2082 86 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 13:41:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\ST6Gal-PA 452 GA18492-PA 1..452 1..451 2083 86 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 13:41:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\ST6Gal-PA 451 GM11799-PA 1..451 1..451 2430 98.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 13:41:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\ST6Gal-PA 449 GD24925-PA 1..449 1..451 2406 98.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 13:41:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\ST6Gal-PA 452 GJ21108-PA 67..452 62..451 1951 90.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 13:41:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21870-PA 457 GK21870-PA 1..457 1..451 2014 83.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 13:41:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\ST6Gal-PA 452 GE11423-PA 1..452 1..451 2361 96.5 Plus