Clone IP16242 Report

Search the DGRC for IP16242

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:162
Well:42
Vector:pOT2
Associated Gene/TranscriptGstO2-RA
Protein status:IP16242.pep: gold
Sequenced Size:927

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6673 2008-04-29 Release 5.5 accounting
CG6673 2008-08-15 Release 5.9 accounting
CG6673 2008-12-18 5.12 accounting

Clone Sequence Records

IP16242.complete Sequence

927 bp (927 high quality bases) assembled on 2005-11-21

GenBank Submission: BT024242

> IP16242.complete
CACCAACATTTCACGTCTTGGGAATTATTTTAAAATTGTTAACAAAATGG
CCCTGCCGCAAAAGCACTTCAAGAGGGGTTCCACCAAGCCCGAGCTGCCA
GAAGATGGAGTTCCTCGTTTCTTTTCCATGGCATTCTGCCCCTTCAGCCA
CCGAGTTCGTCTGATGCTGGCCGCCAAACATATTGAACATCATAAGATCT
ACGTCGATTTGATTGAGAAGCCTGAATGGTACAAGGATTTCAGTCCTCTG
GGCAAAGTGCCAGCCCTGCAGCTTACTGGGGTGAAGGACCAACCGACCCT
CGTGGAGTCGCTCATCATAGCAGAGTACTTGGACCAGCAATATCCCCAGA
CGCGACTCTTTCCCACGGATCCGCTTCAGAAGGCGCTGGACAAGATTCTA
ATCGAACGTTTTGCTCCAGTGGTCAGTGCCATTTATCCTGTGCTGACTTG
TAATCCCAACGCTCCGAAAGATGCCATACCGAACTTCGAGAATGCCTTGG
ATGTTTTTGAAGTGGAGTTGGGCAAAAGAGGAACGCCCTACTTTGCCGGC
CAGCACATTGGAATCGTGGACTACATGATTTGGCCTTGGTTCGAACGTTT
TCCCAGCATGAAGATCAATACGGAGCAAAAGTATGAGCTGGATACAAAAC
GATTTGAGAAGCTGCTCAAGTGGCGCGATTTGATGACCCAGGATGAGGTT
GTGCAGAAGACAGCTTTGGATGTCCAGTTGCATGCTGAGTTCCAGAAATC
GAAGACCCTTGGAAATCCCCAGTACGACATTGCCTTCAAGGGTACACCAT
AGAACGACAACTGGTTTAGACAAGATCAAATCTTTGGAACCGGTTATGGA
CTGCATTTATGTTTTATTCATTCCATGCGAAAAATTCAATAAACCAAGTG
CATCAGGCAAAAAAAAAAAAAAAAAAA

IP16242.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:25:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG6673-RA 1086 CG6673-RA 157..1065 1..909 4545 100 Plus
CG6673-RB 912 CG6673-RB 25..165 1..141 465 88.6 Plus
se-RA 910 se-RA 842..910 909..841 345 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:02:19
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 8513706..8514293 664..77 2895 99.5 Minus
chr3L 24539361 chr3L 8513402..8513647 908..664 1105 97.6 Minus
chr3L 24539361 chr3L 8515373..8515451 79..1 380 98.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:27:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:02:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8521732..8522319 664..77 2940 100 Minus
3L 28110227 3L 8521428..8521673 909..664 1230 100 Minus
3L 28110227 3L 8523399..8523477 79..1 395 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:17:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 8514832..8515419 664..77 2940 100 Minus
3L 28103327 3L 8514528..8514773 909..664 1230 100 Minus
3L 28103327 3L 8516499..8516577 79..1 395 100 Minus
Blast to na_te.dros performed on 2019-03-16 18:02:17 has no hits.

IP16242.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:03:00 Download gff for IP16242.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 8513402..8513646 665..908 97 <- Minus
chr3L 8513706..8514292 78..664 99 <- Minus
chr3L 8515375..8515451 1..77 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:02:56 Download gff for IP16242.complete
Subject Subject Range Query Range Percent Splice Strand
CG6673-RA 1..756 47..802 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:45:55 Download gff for IP16242.complete
Subject Subject Range Query Range Percent Splice Strand
CG6673-RA 1..756 47..802 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:07:51 Download gff for IP16242.complete
Subject Subject Range Query Range Percent Splice Strand
GstO2-RA 1..756 47..802 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:27:26 Download gff for IP16242.complete
Subject Subject Range Query Range Percent Splice Strand
CG6673-RA 1..756 47..802 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:28:03 Download gff for IP16242.complete
Subject Subject Range Query Range Percent Splice Strand
GstO2-RA 1..756 47..802 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:19:14 Download gff for IP16242.complete
Subject Subject Range Query Range Percent Splice Strand
CG6673-RA 24..921 1..898 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:45:55 Download gff for IP16242.complete
Subject Subject Range Query Range Percent Splice Strand
CG6673-RA 24..921 1..898 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:07:51 Download gff for IP16242.complete
Subject Subject Range Query Range Percent Splice Strand
GstO2-RA 25..932 1..908 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:27:27 Download gff for IP16242.complete
Subject Subject Range Query Range Percent Splice Strand
CG6673-RA 24..921 1..898 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:28:03 Download gff for IP16242.complete
Subject Subject Range Query Range Percent Splice Strand
GstO2-RA 25..932 1..908 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:03:00 Download gff for IP16242.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8521429..8521672 665..908 100 <- Minus
3L 8521732..8522318 78..664 100 <- Minus
3L 8523401..8523477 1..77 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:03:00 Download gff for IP16242.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8521429..8521672 665..908 100 <- Minus
3L 8521732..8522318 78..664 100 <- Minus
3L 8523401..8523477 1..77 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:03:00 Download gff for IP16242.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8521429..8521672 665..908 100 <- Minus
3L 8521732..8522318 78..664 100 <- Minus
3L 8523401..8523477 1..77 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:07:51 Download gff for IP16242.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8514529..8514772 665..908 100 <- Minus
arm_3L 8514832..8515418 78..664 100 <- Minus
arm_3L 8516501..8516577 1..77 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:06:30 Download gff for IP16242.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8514529..8514772 665..908 100 <- Minus
3L 8514832..8515418 78..664 100 <- Minus
3L 8516501..8516577 1..77 100   Minus

IP16242.hyp Sequence

Translation from 0 to 801

> IP16242.hyp
TNISRLGNYFKIVNKMALPQKHFKRGSTKPELPEDGVPRFFSMAFCPFSH
RVRLMLAAKHIEHHKIYVDLIEKPEWYKDFSPLGKVPALQLTGVKDQPTL
VESLIIAEYLDQQYPQTRLFPTDPLQKALDKILIERFAPVVSAIYPVLTC
NPNAPKDAIPNFENALDVFEVELGKRGTPYFAGQHIGIVDYMIWPWFERF
PSMKINTEQKYELDTKRFEKLLKWRDLMTQDEVVQKTALDVQLHAEFQKS
KTLGNPQYDIAFKGTP*

IP16242.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:20:00
Subject Length Description Subject Range Query Range Score Percent Strand
GstO2-PA 251 CG6673-PA 1..251 16..266 1339 100 Plus
GstO2-PB 250 CG6673-PB 1..248 16..263 890 66.3 Plus
GstO3-PA 241 CG6776-PA 5..239 21..260 624 48.3 Plus
se-PA 243 CG6781-PA 5..241 21..263 575 43.6 Plus
GstO1-PA 254 CG6662-PA 5..245 21..262 572 45.9 Plus

IP16242.pep Sequence

Translation from 46 to 801

> IP16242.pep
MALPQKHFKRGSTKPELPEDGVPRFFSMAFCPFSHRVRLMLAAKHIEHHK
IYVDLIEKPEWYKDFSPLGKVPALQLTGVKDQPTLVESLIIAEYLDQQYP
QTRLFPTDPLQKALDKILIERFAPVVSAIYPVLTCNPNAPKDAIPNFENA
LDVFEVELGKRGTPYFAGQHIGIVDYMIWPWFERFPSMKINTEQKYELDT
KRFEKLLKWRDLMTQDEVVQKTALDVQLHAEFQKSKTLGNPQYDIAFKGT
P*

IP16242.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:55:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10161-PA 223 GF10161-PA 1..221 28..249 989 83.4 Plus
Dana\GF10160-PA 250 GF10160-PA 1..248 1..248 866 64.7 Plus
Dana\GF24330-PA 243 GF24330-PA 6..239 7..245 636 50.6 Plus
Dana\GF10159-PA 252 GF10159-PA 5..246 6..250 624 48.6 Plus
Dana\GF24331-PA 243 GF24331-PA 5..241 6..248 574 44 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:55:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15075-PA 248 GG15075-PA 9..248 12..251 1187 92.1 Plus
Dere\GG15074-PA 250 GG15074-PA 1..248 1..248 879 65.9 Plus
Dere\GG14320-PA 241 GG14320-PA 5..239 6..245 647 50 Plus
Dere\GG14321-PA 243 GG14321-PA 5..241 6..248 580 44.4 Plus
Dere\GG15073-PA 254 GG15073-PA 5..245 6..247 573 46.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:55:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16193-PA 249 GH16193-PA 1..247 1..248 873 63.3 Plus
Dgri\GH15264-PA 241 GH15264-PA 5..239 6..245 677 51.7 Plus
Dgri\GH15265-PA 243 GH15265-PA 5..241 6..248 566 43.2 Plus
Dgri\GH18587-PA 1041 GH18587-PA 812..971 24..178 153 30.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:33:50
Subject Length Description Subject Range Query Range Score Percent Strand
GstO2-PA 251 CG6673-PA 1..251 1..251 1339 100 Plus
GstO2-PB 250 CG6673-PB 1..248 1..248 890 66.3 Plus
GstO3-PA 241 CG6776-PA 5..239 6..245 624 48.3 Plus
se-PA 243 CG6781-PA 5..241 6..248 575 43.6 Plus
GstO1-PA 254 CG6662-PA 5..245 6..247 572 45.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:55:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13342-PA 251 GI13342-PA 5..245 6..247 841 63.6 Plus
Dmoj\GI11973-PA 241 GI11973-PA 5..239 6..245 656 51.7 Plus
Dmoj\GI11974-PA 243 GI11974-PA 5..241 6..248 580 44 Plus
Dmoj\GI24516-PA 1070 GI24516-PA 841..1000 24..178 148 29.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:55:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15567-PA 246 GL15567-PA 5..246 8..249 1022 77.7 Plus
Dper\GL15566-PA 250 GL15566-PA 1..248 1..248 867 64 Plus
Dper\GL15503-PA 241 GL15503-PA 5..239 6..245 598 47.9 Plus
Dper\GL15565-PA 253 GL15565-PA 5..244 6..247 593 44.2 Plus
Dper\GL15504-PA 243 GL15504-PA 5..241 6..248 555 42.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:55:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23449-PA 246 GA23449-PA 5..246 8..249 1020 77.3 Plus
Dpse\GA19769-PA 250 GA19769-PA 1..248 1..248 872 64.4 Plus
Dpse\GA23844-PA 241 GA23844-PA 5..239 6..245 602 48.3 Plus
Dpse\GA19760-PA 243 GA19760-PA 5..242 6..245 584 43.8 Plus
Dpse\GA19859-PA 243 GA19859-PA 5..241 6..248 556 42.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:55:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24932-PA 224 GM24932-PA 1..224 28..251 1165 97.3 Plus
Dsec\GM24931-PA 250 GM24931-PA 1..248 1..248 888 66.3 Plus
Dsec\GM25061-PA 241 GM25061-PA 5..239 6..245 629 48.8 Plus
Dsec\GM24930-PA 254 GM24930-PA 5..246 6..248 582 46.3 Plus
Dsec\GM25062-PA 204 GM25062-PA 5..202 6..248 452 38.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:55:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12980-PA 212 GD12980-PA 1..212 40..251 1096 97.6 Plus
Dsim\GD12979-PA 250 GD12979-PA 1..248 1..248 886 66.3 Plus
Dsim\GD14099-PA 241 GD14099-PA 5..239 6..245 590 46.2 Plus
Dsim\GD14100-PA 243 GD14100-PA 5..241 6..248 577 44 Plus
Dsim\GD12978-PA 254 GD12978-PA 5..246 6..248 576 46.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:55:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13170-PA 249 GJ13170-PA 1..249 1..250 900 65.6 Plus
Dvir\GJ13171-PA 222 GJ13171-PA 1..221 28..248 879 73.3 Plus
Dvir\GJ12198-PA 241 GJ12198-PA 5..239 6..245 648 50.2 Plus
Dvir\GJ12199-PA 243 GJ12199-PA 5..241 6..248 571 43.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:55:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20540-PA 239 GK20540-PA 1..239 11..249 954 72.8 Plus
Dwil\GK20539-PA 251 GK20539-PA 3..249 2..248 916 69.1 Plus
Dwil\GK20538-PA 259 GK20538-PA 5..253 6..250 589 44.6 Plus
Dwil\GK20355-PA 243 GK20355-PA 5..241 6..248 581 44.9 Plus
Dwil\GK20354-PA 238 GK20354-PA 8..233 6..236 566 45.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:55:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21298-PA 224 GE21298-PA 1..222 28..249 1128 95 Plus
Dyak\GE21297-PA 250 GE21297-PA 1..248 1..248 886 66.3 Plus
Dyak\GE20748-PA 241 GE20748-PA 5..239 6..245 634 49.6 Plus
Dyak\GE20749-PA 243 GE20749-PA 5..241 6..248 577 44.4 Plus
Dyak\GE21296-PA 254 GE21296-PA 5..245 6..247 562 44.6 Plus