Clone IP16413 Report

Search the DGRC for IP16413

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:164
Well:13
Vector:pOT2
Associated Gene/Transcriptnrv2-RA
Protein status:IP16413.pep: gold
Sequenced Size:1980

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
nrv2 2008-04-29 Release 5.5 accounting
nrv2 2008-08-15 Release 5.9 accounting
nrv2 2008-12-18 5.12 accounting

Clone Sequence Records

IP16413.complete Sequence

1980 bp (1980 high quality bases) assembled on 2006-04-12

GenBank Submission: BT025048

> IP16413.complete
AACGTGTCACGGAGTGTTCGTAACGTGGTCGAAACGCGTTCCGTTTGCAA
ACAGCAACTTGAATAGAGTTTGTGGCCTTTAGATCCAAAGAAAACCCACC
GATAGAAACATGTCCAAGCCAGTACCAATGAGTCCGTCCTTTGTGGACGA
GGATCTGCACAACCTGAGGAAGCCCAAACCGTTCAAATTGGGCCAGTTCT
TATATAACACCGAGGATGGAACGGTTATGGGTCGCGATCGATCGTCATGG
GCCAAAATCGGAATCTTCTATGTGGCCTTCTACGGAGTCCTAGCCGCCCT
CGTTGCCATCTGCATGTGGGCCTTCTTCCAAACTCTCGATCCTCGCATTC
CCAAGTGGACCCTGGACCGTTCCCTGATAGGTACAAATCCAGGTCTAGGT
TTTCGACCCCTGCCACCGGTGGACAATGTGGAAAGCACTTTGATCTGGTA
CAAGGGCACCCAACACGAGAACTACAAGCACTGGACAGACTCCCTGGATG
ATTTCCTTGCGGTGTACAAAGTACCTGGTCTAACACCCGGCCGTGGTCAG
AACATCTACAACTGCGACTACAACCAGCCGCCGCCAAAGGGTCAGGTGTG
CGACGTGGACATCAAGACGTGGTCGCCGTGCACCAAGGAGAATAACTACA
GCTACCACAAGAGTGCGCCGTGTATCTTCCTCAAGCTGAACAAGATCTAC
GGCTGGATTCCGGAGTACTACAACAGATCGAATGACTTGCCCGCGAACAT
GCCCGCCAGCTTGAAGACCTACATCGCAGAGGTCGAGAAGACGCAGCCAG
AAAAGCTAAACACCATTTGGGTATCGTGCGAGGGCGAGAACCCAGCCGAC
CAGGAGAACATTGGTGCTGTCAACTACCTGCCAATCAGGGGATTCCCCGG
CTACTTCTATCCCTACCAGAACTCCGAGGGCTACTTGAGTCCCCTGGTGG
CGGTGCACTTCCAGCGCCCCAAACGCGGAATCATCATCAACGTGGAGTGC
AGGGCTTGGGCTCGCAACATCATACACGATCGCAAGGAGAGAATCGGATC
GGTGCACTATGAGCTCCTCATTGATTAAATTGTACCACACTATTACAACA
TAACATAATAGCAAACACAATAACAAGAATCTCCGATTAACAAGAATCTC
GGTATCAGAGGTGTGTGAGGACGATAAGTCTCGTCTAAGACAATCCTACC
AGAGGCAAACCACCAGATGTTGTAGTGAAGATTGTGAAAGGTTCAGATTT
TCGAATGTCATTAAAAATCCAAATTATTTAAACTTGTTTTCCGCGTTATA
AAGCATACAAAATATATATTCAAGACTTGCAACGCCTATAAACATACAAA
TTTTGAATTCCAATAACTTTTTATGCACTTTACGATGAAAGTTAGACGTA
AGATTGTAAAGCTAAACCACCAAGATGGGAACTCAATGGACAGGATGGAA
CTAAACCAGCCTGAATCTCGTTTGGCGCTGACCAGTAAATTTGGCGCTGA
CCAGTAAATAGTAAATCAATCAAATGCAACAAATTTACAGCAATTAATCC
AAACTGCCATTTCCAATGAATTAACAAACGAATCCCTAGATATTACAAAT
TTATAAAGAAAATTTAAGAATCATTTTTGAGTCTGCCGCTATGTAACATG
TAACCGAAAACAGACCAATTTTGTCTACCAAAAATCTAAATATTTACAGC
TAGCTTCAGAATTTACCATATTTATTAATAACTTAGTCAAAAGTGAAGCC
TATATACATATACATCACATTTTGATAGACGACAAAAGTGCAACATTTGG
AAAACAGAAAATCGTAACTTCGGTTAACTTGTAAGCTTATGATATAATAA
TTGCGAAGATTGAAATTTAAGGAAATAAATTGAGACGGCTAAGAGACACA
AAACACTTTCAATTCCTTTTCAATAAAAATCAAATGAAAGTAGTCAGAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

IP16413.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:28:47
Subject Length Description Subject Range Query Range Score Percent Strand
nrv2-RA 2132 nrv2-RA 127..2077 1..1951 9755 100 Plus
nrv2.a 2147 nrv2.a 265..2142 74..1951 9390 100 Plus
nrv2-RD 2191 nrv2-RD 310..2186 75..1951 9385 100 Plus
nrv2.a 2147 nrv2.a 28..102 1..75 375 100 Plus
nrv2-RD 2191 nrv2-RD 60..134 1..75 375 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:08:27
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 6788817..6789792 1947..975 4710 99.1 Minus
chr2L 23010047 chr2L 6790080..6790377 805..508 1475 99.7 Minus
chr2L 23010047 chr2L 6792277..6792454 251..74 890 100 Minus
chr2L 23010047 chr2L 6789847..6790018 975..804 815 98.3 Minus
chr2L 23010047 chr2L 6790748..6790891 394..251 720 100 Minus
chr2L 23010047 chr2L 6790567..6790689 512..390 615 100 Minus
chr2L 23010047 chr2L 6793541..6793615 75..1 375 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:27:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:08:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6789766..6790742 1951..975 4885 100 Minus
2L 23513712 2L 6791031..6791328 805..508 1475 99.7 Minus
2L 23513712 2L 6793228..6793405 251..74 890 100 Minus
2L 23513712 2L 6790798..6790969 975..804 860 100 Minus
2L 23513712 2L 6791699..6791842 394..251 720 100 Minus
2L 23513712 2L 6791518..6791640 512..390 615 100 Minus
2L 23513712 2L 6794492..6794566 75..1 375 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:19:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6789766..6790742 1951..975 4885 100 Minus
2L 23513712 2L 6791031..6791328 805..508 1475 99.6 Minus
2L 23513712 2L 6793228..6793405 251..74 890 100 Minus
2L 23513712 2L 6790798..6790969 975..804 860 100 Minus
2L 23513712 2L 6791699..6791842 394..251 720 100 Minus
2L 23513712 2L 6791518..6791640 512..390 615 100 Minus
2L 23513712 2L 6794492..6794566 75..1 375 100 Minus
Blast to na_te.dros performed 2019-03-15 18:08:26
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 925..961 967..1002 119 83.8 Plus
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 4633..4686 353..300 117 68.5 Minus

IP16413.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:09:26 Download gff for IP16413.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 6789848..6790016 806..974 98 <- Minus
chr2L 6788817..6789792 975..1947 99 <- Minus
chr2L 6790080..6790372 513..805 100 <- Minus
chr2L 6790567..6790686 393..512 100 <- Minus
chr2L 6790750..6790890 252..392 100 <- Minus
chr2L 6792277..6792453 75..251 100 <- Minus
chr2L 6793542..6793615 1..74 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:03:18 Download gff for IP16413.complete
Subject Subject Range Query Range Percent Splice Strand
nrv2-RE 1..969 110..1078 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:51:09 Download gff for IP16413.complete
Subject Subject Range Query Range Percent Splice Strand
nrv2-RE 1..969 110..1078 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:53:56 Download gff for IP16413.complete
Subject Subject Range Query Range Percent Splice Strand
nrv2-RD 1..969 110..1078 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:31:49 Download gff for IP16413.complete
Subject Subject Range Query Range Percent Splice Strand
nrv2-RE 1..969 110..1078 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:53:39 Download gff for IP16413.complete
Subject Subject Range Query Range Percent Splice Strand
nrv2-RD 1..969 110..1078 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:24:57 Download gff for IP16413.complete
Subject Subject Range Query Range Percent Splice Strand
nrv2-RA 60..2006 1..1947 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:51:09 Download gff for IP16413.complete
Subject Subject Range Query Range Percent Splice Strand
nrv2-RA 60..2006 1..1947 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:53:56 Download gff for IP16413.complete
Subject Subject Range Query Range Percent Splice Strand
nrv2-RA 34..1980 1..1947 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:31:49 Download gff for IP16413.complete
Subject Subject Range Query Range Percent Splice Strand
nrv2-RA 60..2006 1..1947 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:53:39 Download gff for IP16413.complete
Subject Subject Range Query Range Percent Splice Strand
nrv2-RA 34..1980 1..1947 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:09:26 Download gff for IP16413.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6794493..6794566 1..74 100   Minus
2L 6789770..6790742 975..1947 100 <- Minus
2L 6790799..6790967 806..974 100 <- Minus
2L 6791031..6791323 513..805 100 <- Minus
2L 6791518..6791637 393..512 100 <- Minus
2L 6791701..6791841 252..392 100 <- Minus
2L 6793228..6793404 75..251 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:09:26 Download gff for IP16413.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6794493..6794566 1..74 100   Minus
2L 6789770..6790742 975..1947 100 <- Minus
2L 6790799..6790967 806..974 100 <- Minus
2L 6791031..6791323 513..805 100 <- Minus
2L 6791518..6791637 393..512 100 <- Minus
2L 6791701..6791841 252..392 100 <- Minus
2L 6793228..6793404 75..251 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:09:26 Download gff for IP16413.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6794493..6794566 1..74 100   Minus
2L 6789770..6790742 975..1947 100 <- Minus
2L 6790799..6790967 806..974 100 <- Minus
2L 6791031..6791323 513..805 100 <- Minus
2L 6791518..6791637 393..512 100 <- Minus
2L 6791701..6791841 252..392 100 <- Minus
2L 6793228..6793404 75..251 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:53:56 Download gff for IP16413.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6791031..6791323 513..805 100 <- Minus
arm_2L 6791518..6791637 393..512 100 <- Minus
arm_2L 6791701..6791841 252..392 100 <- Minus
arm_2L 6793228..6793404 75..251 100 <- Minus
arm_2L 6794493..6794566 1..74 100   Minus
arm_2L 6789770..6790742 975..1947 100 <- Minus
arm_2L 6790799..6790967 806..974 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:10:21 Download gff for IP16413.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6789770..6790742 975..1947 100 <- Minus
2L 6790799..6790967 806..974 100 <- Minus
2L 6791031..6791323 513..805 100 <- Minus
2L 6791518..6791637 393..512 100 <- Minus
2L 6791701..6791841 252..392 100 <- Minus
2L 6793228..6793404 75..251 100 <- Minus
2L 6794493..6794566 1..74 100   Minus

IP16413.hyp Sequence

Translation from 109 to 1077

> IP16413.hyp
MSKPVPMSPSFVDEDLHNLRKPKPFKLGQFLYNTEDGTVMGRDRSSWAKI
GIFYVAFYGVLAALVAICMWAFFQTLDPRIPKWTLDRSLIGTNPGLGFRP
LPPVDNVESTLIWYKGTQHENYKHWTDSLDDFLAVYKVPGLTPGRGQNIY
NCDYNQPPPKGQVCDVDIKTWSPCTKENNYSYHKSAPCIFLKLNKIYGWI
PEYYNRSNDLPANMPASLKTYIAEVEKTQPEKLNTIWVSCEGENPADQEN
IGAVNYLPIRGFPGYFYPYQNSEGYLSPLVAVHFQRPKRGIIINVECRAW
ARNIIHDRKERIGSVHYELLID*

IP16413.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:21:12
Subject Length Description Subject Range Query Range Score Percent Strand
nrv2-PE 322 CG9261-PE 1..322 1..322 1782 100 Plus
nrv2-PA 322 CG9261-PA 1..322 1..322 1782 100 Plus
nrv2-PD 322 CG9261-PD 1..322 1..322 1782 100 Plus
nrv2-PG 323 CG9261-PG 22..323 21..322 1589 94.7 Plus
nrv2-PF 323 CG9261-PF 22..323 21..322 1589 94.7 Plus

IP16413.pep Sequence

Translation from 109 to 1077

> IP16413.pep
MSKPVPMSPSFVDEDLHNLRKPKPFKLGQFLYNTEDGTVMGRDRSSWAKI
GIFYVAFYGVLAALVAICMWAFFQTLDPRIPKWTLDRSLIGTNPGLGFRP
LPPVDNVESTLIWYKGTQHENYKHWTDSLDDFLAVYKVPGLTPGRGQNIY
NCDYNQPPPKGQVCDVDIKTWSPCTKENNYSYHKSAPCIFLKLNKIYGWI
PEYYNRSNDLPANMPASLKTYIAEVEKTQPEKLNTIWVSCEGENPADQEN
IGAVNYLPIRGFPGYFYPYQNSEGYLSPLVAVHFQRPKRGIIINVECRAW
ARNIIHDRKERIGSVHYELLID*

IP16413.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:00:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14479-PA 323 GF14479-PA 21..323 20..322 1476 88.8 Plus
Dana\GF14332-PA 311 GF14332-PA 24..311 29..322 859 52.4 Plus
Dana\GF14480-PA 309 GF14480-PA 16..309 22..322 660 42.5 Plus
Dana\GF18471-PA 386 GF18471-PA 25..260 20..307 187 24.9 Plus
Dana\GF18472-PA 378 GF18472-PA 24..276 19..319 155 23.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:00:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23580-PA 323 GG23580-PA 21..323 20..322 1495 90.8 Plus
Dere\GG21302-PA 311 GG21302-PA 13..311 24..322 859 51.5 Plus
Dere\GG23582-PA 309 GG23582-PA 16..309 22..322 623 41.8 Plus
Dere\GG21303-PA 204 GG21303-PA 30..204 147..322 548 54.5 Plus
Dere\GG16108-PA 345 GG16108-PA 25..274 20..319 194 20.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:00:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10786-PA 323 GH10786-PA 21..323 20..322 1426 84.5 Plus
Dgri\GH13318-PA 311 GH13318-PA 24..311 29..322 823 50.5 Plus
Dgri\GH10787-PA 309 GH10787-PA 16..309 22..322 597 39.9 Plus
Dgri\GH22397-PA 277 GH22397-PA 25..274 20..319 211 22.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:05:21
Subject Length Description Subject Range Query Range Score Percent Strand
nrv2-PE 322 CG9261-PE 1..322 1..322 1782 100 Plus
nrv2-PA 322 CG9261-PA 1..322 1..322 1782 100 Plus
nrv2-PD 322 CG9261-PD 1..322 1..322 1782 100 Plus
nrv2-PG 323 CG9261-PG 22..323 21..322 1589 94.7 Plus
nrv2-PF 323 CG9261-PF 22..323 21..322 1589 94.7 Plus
nrv2-PC 323 CG9261-PC 22..323 21..322 1589 94.7 Plus
nrv3-PE 313 CG8663-PE 13..313 24..322 877 51.5 Plus
nrv3-PD 311 CG8663-PD 13..311 24..322 875 51.5 Plus
nrv3-PC 311 CG8663-PC 13..311 24..322 875 51.5 Plus
nrv3-PA 311 CG8663-PA 13..311 24..322 875 51.5 Plus
nrv1-PB 309 CG9258-PB 16..309 22..322 639 42.5 Plus
nrv1-PA 309 CG9258-PA 16..309 22..322 639 42.5 Plus
CG11703-PA 353 CG11703-PA 25..274 20..319 224 23.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:00:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17298-PA 323 GI17298-PA 23..323 22..322 1358 81.7 Plus
Dmoj\GI12264-PA 310 GI12264-PA 24..310 29..322 825 50.3 Plus
Dmoj\GI17299-PA 309 GI17299-PA 1..309 7..322 646 40.7 Plus
Dmoj\GI16930-PA 276 GI16930-PA 21..271 16..319 171 24.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:00:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25960-PA 323 GL25960-PA 21..323 20..322 1465 88.4 Plus
Dper\GL26665-PA 311 GL26665-PA 13..311 24..322 854 51.1 Plus
Dper\GL25961-PA 309 GL25961-PA 26..309 29..322 618 41.4 Plus
Dper\GL25223-PA 321 GL25223-PA 23..321 22..322 533 37.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:00:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21652-PA 323 GA21652-PA 21..323 20..322 1467 88.8 Plus
Dpse\GA21243-PA 311 GA21243-PA 13..311 24..322 854 51.1 Plus
Dpse\GA21650-PA 309 GA21650-PA 26..309 29..322 616 40.9 Plus
Dpse\GA22950-PA 321 GA22950-PA 26..321 22..322 532 37.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:00:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13825-PA 323 GM13825-PA 21..323 20..322 1535 93.7 Plus
Dsec\GM23414-PA 311 GM23414-PA 13..311 24..322 859 51.5 Plus
Dsec\GM13836-PA 309 GM13836-PA 16..309 22..322 634 42.2 Plus
Dsec\GM26920-PA 347 GM26920-PA 22..274 17..319 219 22.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:00:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22540-PA 340 GD22540-PA 21..340 20..322 1489 87.2 Plus
Dsim\GD22541-PA 309 GD22541-PA 16..309 22..322 632 41.8 Plus
Dsim\GD20125-PA 347 GD20125-PA 22..274 17..319 223 22.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:00:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15658-PA 323 GJ15658-PA 23..323 22..322 1411 86 Plus
Dvir\GJ17853-PA 311 GJ17853-PA 24..311 29..322 828 49.8 Plus
Dvir\GJ15669-PA 309 GJ15669-PA 1..309 7..322 635 40.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:00:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24210-PA 323 GK24210-PA 21..323 20..322 1434 86.1 Plus
Dwil\GK18742-PA 311 GK18742-PA 24..311 29..322 845 51.4 Plus
Dwil\GK24211-PA 309 GK24211-PA 24..309 27..322 632 41.9 Plus
Dwil\GK13483-PA 345 GK13483-PA 92..262 137..310 166 28 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:00:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18402-PA 323 GE18402-PA 21..323 20..322 1505 91.4 Plus
Dyak\GE12918-PA 311 GE12918-PA 13..311 24..322 861 51.5 Plus
Dyak\GE18403-PA 309 GE18403-PA 16..309 22..322 627 41.8 Plus
Dyak\GE25144-PA 348 GE25144-PA 25..273 20..319 220 22.8 Plus