Clone IP16421 Report

Search the DGRC for IP16421

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:164
Well:21
Vector:pOT2
Associated Gene/TranscriptPoxm-RC
Protein status:IP16421.pep: gold
Sequenced Size:2570

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9610 2007-03-28 Manual selection by Ken Wan
Poxm 2008-04-29 Release 5.5 accounting
Poxm 2008-08-15 Release 5.9 accounting
Poxm 2008-12-18 5.12 accounting

Clone Sequence Records

IP16421.complete Sequence

2570 bp assembled on 2007-04-18

GenBank Submission: BT025043

> IP16421.complete
GGTGACGAGCAGCAACGATCGTTTTTGGAGAGCGCGCCAGGTTTTCCCGA
TCCAAACCGTTCCCAACCGATACGCTACGACCCGATACGCTAGAGCAAAA
AGGCCATCGAAAGATTTAAAGGCGCGCGCACGGATCAGTGAATGCTGTTT
AAATCGGTTCATTTGCAAACCATCAATCGCACGGGAGGTCCGCCAGTCAA
GTCCAAAGTAAACCGACATAATTCCCAAAATCAAAGCATAACAAACCCAT
TGTAGTGTCATTAAGTGTGTGTAGTTCCCGCTTCCCCAATAAGGTGTGAT
AAGTGCGTGATAATTTTCGAGCCAACCTACTCGAGAGCGATCGTTTTGGC
CCGAAAATGTGCTAATCAGATCTCAGTCTTGGTTCACGGCATAGTAGGCA
TCGCAGCCCGATGCTGTCCCGCACAACTGGCGCCAATTTGTATACAAATT
TCATGCCTTAATTGAAACTCACATTATAGCCAAGTGCGAAAAGTTAACGA
CTAGGTAACCACCGACAATCCCCAGCAAAGCAGAGTCCAACTATTCCGGC
GAATCCAATCGGAGAAAGTTCCACGGCGGAGTTGGCGAAAGGCAGATTTG
GGTGCCCACAATTGCAATTCTGGAGTTCTTCAATCAATTGCCATCGGCCG
AAATGGACCCAGAGTCGCAGTGTCCGCAGTATGGCGAGGTGAACCAGCTG
GGCGGCGTCTTTGTCAACGGCCGTCCGCTGCCCAATGCGACCAGGATGCG
GATCGTGGAGCTGGCCCGCCTGGGCATCCGACCCTGCGACATATCGCGCC
AGCTGCGAGTGAGTCACGGCTGCGTGTCCAAGATCCTGGCCAGGTACCAC
GAAACGGGCTCCATACTACCCGGCGCAATTGGGGGATCCAAGCCGCGCGT
GACCACACCCAAGGTGGTCAACTACATCAGGGAACTGAAGCAGCGAGATC
CCGGCATCTTTGCGTGGGAAATCCGGGACCGTTTGCTCAGCGAGGGCATA
TGCGACAAAACGAATGTACCCAGTGTGAGCTCCATATCGAGAATCCTGCG
CAACAAGTTGGGCAGCCTGGGGCATCAGCACACGCCGGGAACGGTGATGG
GCAGCGGAAGCAGCAGCGGTGGCGGCAGTGTGTCCAGCAATGGTGGACAA
AACAATGGCACGAGTGCCAGCAATAATATTAATCTGAGCAATCTGGGTAA
TCCCGGCGGTGGACCGCACCATCCGCACCACCATCATCATCATCAGTCAG
CGGCGGCGGCGGCAAGTGCCCATCATGTGCACGCCCACGCCCATGCCCAC
GCCCACCTGTACAACTCCATCTACCAGCCGTACAGTGCTGCGGCGGCCTA
CAGCATGAAGACGCCCTGTGGAAGTCCATCCCCGCCGCAGGGAGCGGGCG
GTCAGGGATCAGTGCCCCATCCCCACCAGCTGAGGAGTGTGGCCGCCGCA
GCCGCTGCCGCCCACTGGCCCTCCTCCCACTCGGTCAGCGATATCCTGGC
CCACCATCAGGCTGTTGCCCTGCGCGCCAGTTGCCAAGTGGGCGTCGGAG
TGGGTGGAATGGGCGGCATGGGCAGTACGGTATCCCCGCTGCCGATGACT
CCTTCGCCGGTGGCGGGAACGGCCGGTGGTCAGCCACTGCTCGACTGCGA
GGGTGGGGCGGGACAGCAGTCGCCGTACAACTACTACATGTACTTCCAGA
ACGGCGGAATGCATCACCACCATCATCACGGCGGAATGATGGCCGCTGGA
GCCACGGGCTTATGATTGGGTGGTCTATAATCAGCGGATTGGTTGCGGGT
CTAGCTACTTTCGATCGCGGTTGTTCAGTCTAGGTTACTCTAGTCTAAGA
GCTAGTTAGGGAATGGTCTCATCATGGCGCTCACTTGTCACTCAAATTTT
AAACAAATGCACTAAAAGAACTTATAATTATCCCGGAAATTTCAAAATAA
TTTAAACTTTAACTAAGAAGCTTGCAAATACTGGTGTGTGGTTAGGCAAG
TACAAATAGATAAAGTGTCGTAAAAAAATGTGTGCGAGATGATTCACATA
ATCATAAGGTTTGCTTAGTTATATTACCTGCCCAGATGTATCACAGCTAA
AATATTTGTTAAAAAGATTTTTCAAGATCTTAACTAAACTAAAATATGTA
CTATTGTGTGATAGGTGAGTATCGTGATTAGTTAGGCCTTCAAATGTGAG
TTGTGGGCTGTCAGGACTCAGACCTGGTAATGTTCGCATTTCATAACGAA
TTTCATGTAATCCTGGAGATTTAACTTTGCCTTCTTTTTTGTCTCATATC
GGATTGTTTGCGTTTTGAGTTCGGGGTGGTCAAAAATAAAGTGTATTGCT
TATAAAAACATATTGTAAAGTCAAAAGTATTGAGTAGTACTTTAATCGCT
TTAGATGAATACGCGTTGTATAGGTTCTTGTTCTCATGACTACACTATTT
GTACAATATGCTCATTAAGTAAACTAGTTGACTAATTTATGCTACGATTA
CATCAATAACAATTAAACCAAGTGTAACTATCGAATAAAATTGTATTTTT
AAAAAAAAAAAAAAAAAAAA

IP16421.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:42:35
Subject Length Description Subject Range Query Range Score Percent Strand
Poxm-RC 3450 Poxm-RC 49..2601 1..2553 12765 100 Plus
Ctr1B-RA 1353 Ctr1B-RA 1108..1353 2553..2308 1230 100 Minus
Ctr1B.b 1395 Ctr1B.b 1182..1395 2553..2340 1070 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:08:37
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 4145042..4146932 2550..660 9440 99.9 Minus
chr3R 27901430 chr3R 4159134..4159795 662..1 3310 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:28:02 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:08:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8319022..8320915 2553..660 9470 100 Minus
3R 32079331 3R 8333115..8333776 662..1 3310 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:40:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 8059853..8061746 2553..660 9470 100 Minus
3R 31820162 3R 8073946..8074607 662..1 3310 100 Minus
Blast to na_te.dros performed on 2019-03-16 08:08:35 has no hits.

IP16421.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:09:33 Download gff for IP16421.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 4145042..4146929 663..2550 99 <- Minus
chr3R 4159134..4159795 1..662 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:44:38 Download gff for IP16421.complete
Subject Subject Range Query Range Percent Splice Strand
Poxm-RC 1..1113 653..1765 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:18:34 Download gff for IP16421.complete
Subject Subject Range Query Range Percent Splice Strand
Poxm-RC 1..1113 653..1765 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:53:33 Download gff for IP16421.complete
Subject Subject Range Query Range Percent Splice Strand
Poxm-RC 1..1113 653..1765 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:14:42 Download gff for IP16421.complete
Subject Subject Range Query Range Percent Splice Strand
Poxm-RC 1..1113 653..1765 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:35:31 Download gff for IP16421.complete
Subject Subject Range Query Range Percent Splice Strand
Poxm-RC 1..1113 653..1765 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:44:37 Download gff for IP16421.complete
Subject Subject Range Query Range Percent Splice Strand
Poxm-RC 17..1781 1..1765 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:18:34 Download gff for IP16421.complete
Subject Subject Range Query Range Percent Splice Strand
Poxm-RC 17..2566 1..2550 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:53:33 Download gff for IP16421.complete
Subject Subject Range Query Range Percent Splice Strand
Poxm-RC 17..2566 1..2550 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:14:42 Download gff for IP16421.complete
Subject Subject Range Query Range Percent Splice Strand
Poxm-RC 17..1781 1..1765 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:35:31 Download gff for IP16421.complete
Subject Subject Range Query Range Percent Splice Strand
Poxm-RC 17..2566 1..2550 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:09:33 Download gff for IP16421.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8319025..8320912 663..2550 100 <- Minus
3R 8333115..8333776 1..662 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:09:33 Download gff for IP16421.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8319025..8320912 663..2550 100 <- Minus
3R 8333115..8333776 1..662 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:09:33 Download gff for IP16421.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8319025..8320912 663..2550 100 <- Minus
3R 8333115..8333776 1..662 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:53:33 Download gff for IP16421.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4144747..4146634 663..2550 100 <- Minus
arm_3R 4158837..4159498 1..662 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:07:43 Download gff for IP16421.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8059856..8061743 663..2550 100 <- Minus
3R 8073946..8074607 1..662 100   Minus

IP16421.pep Sequence

Translation from 652 to 1764

> IP16421.pep
MDPESQCPQYGEVNQLGGVFVNGRPLPNATRMRIVELARLGIRPCDISRQ
LRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKVVNYIRELKQRDP
GIFAWEIRDRLLSEGICDKTNVPSVSSISRILRNKLGSLGHQHTPGTVMG
SGSSSGGGSVSSNGGQNNGTSASNNINLSNLGNPGGGPHHPHHHHHHQSA
AAAASAHHVHAHAHAHAHLYNSIYQPYSAAAAYSMKTPCGSPSPPQGAGG
QGSVPHPHQLRSVAAAAAAAHWPSSHSVSDILAHHQAVALRASCQVGVGV
GGMGGMGSTVSPLPMTPSPVAGTAGGQPLLDCEGGAGQQSPYNYYMYFQN
GGMHHHHHHGGMMAAGATGL*

IP16421.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:16:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16668-PA 372 GF16668-PA 6..354 4..350 1239 89.4 Plus
Dana\GF23439-PA 613 GF23439-PA 29..198 11..174 507 56.5 Plus
Dana\GF20618-PA 554 GF20618-PA 160..312 10..162 505 62.1 Plus
Dana\GF13361-PA 427 GF13361-PA 21..154 11..144 499 67.2 Plus
Dana\GF22818-PA 900 GF22818-PA 97..264 4..172 477 57.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:16:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17455-PA 404 GG17455-PA 36..404 4..370 1846 97.3 Plus
Dere\GG10275-PA 614 GG10275-PA 29..199 11..177 511 57.3 Plus
Dere\GG16406-PA 842 GG16406-PA 175..300 10..135 507 72.2 Plus
Dere\GG23031-PA 427 GG23031-PA 21..143 11..133 494 71.5 Plus
Dere\GG16402-PA 543 GG16402-PA 33..154 13..134 470 70.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:16:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17421-PA 347 GH17421-PA 1..347 1..370 1167 74.7 Plus
Dgri\GH23966-PA 862 GH23966-PA 180..305 10..135 512 73 Plus
Dgri\GH22657-PA 433 GH22657-PA 21..144 11..134 490 71.8 Plus
Dgri\GH10195-PA 636 GH10195-PA 29..153 11..135 488 66.4 Plus
Dgri\GH23963-PA 545 GH23963-PA 37..158 13..134 469 70.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:37:17
Subject Length Description Subject Range Query Range Score Percent Strand
Poxm-PC 370 CG9610-PC 1..370 1..370 2000 100 Plus
gsb-PA 427 CG3388-PA 21..171 11..162 495 63.8 Plus
prd-PA 590 CG6716-PA 6..176 11..177 493 57.3 Plus
prd-PB 613 CG6716-PB 29..199 11..177 493 57.3 Plus
sv-PI 491 CG11049-PI 20..242 10..225 488 46.4 Plus
sv-PG 628 CG11049-PG 176..398 10..225 488 46.4 Plus
sv-PC 647 CG11049-PC 176..398 10..225 488 46.4 Plus
sv-PD 680 CG11049-PD 176..398 10..225 488 46.4 Plus
sv-PF 792 CG11049-PF 176..398 10..225 488 46.4 Plus
sv-PH 842 CG11049-PH 176..398 10..225 488 46.4 Plus
sv-PA 844 CG11049-PA 176..398 10..225 488 46.4 Plus
ey-PA 838 CG1464-PA 41..199 13..174 477 61.1 Plus
ey-PC 857 CG1464-PC 60..218 13..174 477 61.1 Plus
ey-PD 898 CG1464-PD 101..259 13..174 477 61.1 Plus
toy-PC 526 CG11186-PC 33..154 13..134 447 70.5 Plus
toy-PA 543 CG11186-PA 33..154 13..134 447 70.5 Plus
Poxn-PB 425 CG8246-PB 9..167 13..164 429 56 Plus
Poxn-PA 425 CG8246-PA 9..167 13..164 429 56 Plus
gsb-n-PA 449 CG2692-PA 22..141 11..133 428 66.7 Plus
toe-PB 550 CG10704-PB 104..326 16..199 268 31.8 Plus
toe-PA 640 CG10704-PA 104..326 16..199 268 31.8 Plus
eyg-PC 670 CG10488-PC 121..219 33..135 251 50 Plus
eyg-PB 670 CG10488-PB 121..219 33..135 251 50 Plus
eyg-PA 670 CG10488-PA 121..219 33..135 251 50 Plus
Vsx1-PB 837 CG4136-PB 234..348 139..234 178 40.7 Plus
Vsx1-PA 837 CG4136-PA 234..348 139..234 178 40.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:16:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22750-PA 377 GI22750-PA 40..175 4..139 727 98.5 Plus
Dmoj\GI14046-PA 965 GI14046-PA 227..352 10..135 512 73 Plus
Dmoj\GI21167-PA 437 GI21167-PA 21..143 11..133 495 71.5 Plus
Dmoj\GI14821-PA 617 GI14821-PA 29..151 11..133 481 66.7 Plus
Dmoj\GI14042-PA 569 GI14042-PA 38..159 13..134 467 70.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:16:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24118-PA 229 GL24118-PA 30..166 4..140 722 97.1 Plus
Dper\GL17644-PA 432 GL17644-PA 21..172 11..163 518 64.1 Plus
Dper\GL18401-PA 871 GL18401-PA 184..309 10..135 511 73 Plus
Dper\GL14130-PA 601 GL14130-PA 29..157 11..139 497 65.9 Plus
Dper\GL17563-PA 546 GL17563-PA 34..155 13..134 469 70.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:16:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21910-PC 376 GA21910-PC 8..149 4..145 746 97.2 Plus
Dpse\GA17419-PA 432 GA17419-PA 21..172 11..163 519 64.1 Plus
Dpse\spa-sv-PA 807 GA27911-PA 184..309 10..135 510 73 Plus
Dpse\GA19807-PA 646 GA19807-PA 29..158 11..140 496 65.4 Plus
Dpse\GA27636-PA 546 GA27636-PA 34..155 13..134 469 70.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:16:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26349-PA 402 GM26349-PA 36..402 4..370 1890 99.5 Plus
Dsec\GM26340-PA 613 GM26340-PA 29..199 11..177 506 56.7 Plus
Dsec\GM13025-PA 839 GM13025-PA 176..301 10..135 488 70.6 Plus
Dsec\GM11922-PA 265 GM11922-PA 21..143 11..133 479 71.5 Plus
Dsec\GM13021-PA 543 GM13021-PA 33..154 13..134 470 70.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:16:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22133-PA 613 GD22133-PA 29..199 11..177 514 57.3 Plus
Dsim\GD24421-PA 680 GD24421-PA 176..301 10..135 508 72.2 Plus
Dsim\GD11918-PA 427 GD11918-PA 21..143 11..133 495 71.5 Plus
Dsim\GD24416-PA 342 GD24416-PA 33..154 13..134 464 70.5 Plus
Dsim\GD24898-PA 449 GD24898-PA 22..147 11..138 453 65.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:16:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22751-PA 462 GJ22751-PA 127..462 4..370 1171 75.1 Plus
Dvir\GJ13730-PA 863 GJ13730-PA 169..294 10..135 514 73 Plus
Dvir\GJ21022-PA 442 GJ21022-PA 21..143 11..133 496 72.4 Plus
Dvir\GJ23973-PA 619 GJ23973-PA 29..180 11..162 493 59.2 Plus
Dvir\GJ13300-PA 549 GJ13300-PA 37..158 13..134 467 70.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:16:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14101-PA 367 GK14101-PA 6..367 1..370 1222 80.7 Plus
Dwil\GK13586-PA 935 GK13586-PA 228..353 10..135 513 73 Plus
Dwil\GK21081-PA 614 GK21081-PA 29..153 11..135 495 67.2 Plus
Dwil\GK21576-PA 439 GK21576-PA 21..154 11..144 485 66.4 Plus
Dwil\GK13683-PA 552 GK13683-PA 34..155 13..134 469 70.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:16:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24855-PA 403 GE24855-PA 36..403 4..370 1863 98.1 Plus
Dyak\GE12435-PA 612 GE12435-PA 29..199 11..177 510 57.3 Plus
Dyak\GE14566-PA 847 GE14566-PA 178..303 10..135 507 72.2 Plus
Dyak\GE14464-PA 427 GE14464-PA 21..143 11..133 494 71.5 Plus
Dyak\GE14559-PA 898 GE14559-PA 101..257 13..174 486 60.5 Plus

IP16421.hyp Sequence

Translation from 652 to 1764

> IP16421.hyp
MDPESQCPQYGEVNQLGGVFVNGRPLPNATRMRIVELARLGIRPCDISRQ
LRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKVVNYIRELKQRDP
GIFAWEIRDRLLSEGICDKTNVPSVSSISRILRNKLGSLGHQHTPGTVMG
SGSSSGGGSVSSNGGQNNGTSASNNINLSNLGNPGGGPHHPHHHHHHQSA
AAAASAHHVHAHAHAHAHLYNSIYQPYSAAAAYSMKTPCGSPSPPQGAGG
QGSVPHPHQLRSVAAAAAAAHWPSSHSVSDILAHHQAVALRASCQVGVGV
GGMGGMGSTVSPLPMTPSPVAGTAGGQPLLDCEGGAGQQSPYNYYMYFQN
GGMHHHHHHGGMMAAGATGL*

IP16421.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:21:36
Subject Length Description Subject Range Query Range Score Percent Strand
Poxm-PC 370 CG9610-PC 1..370 1..370 2000 100 Plus
gsb-PA 427 CG3388-PA 21..171 11..162 495 63.8 Plus
prd-PA 590 CG6716-PA 6..176 11..177 493 57.3 Plus
prd-PB 613 CG6716-PB 29..199 11..177 493 57.3 Plus
sv-PI 491 CG11049-PI 20..242 10..225 488 46.4 Plus