Clone IP16506 Report

Search the DGRC for IP16506

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:165
Well:6
Vector:pOT2
Associated Gene/TranscriptCsp-RC
Protein status:IP16506.pep: gold
Sequenced Size:1023

Clone Sequence Records

IP16506.complete Sequence

1023 bp assembled on 2009-06-22

GenBank Submission: BT088851.1

> IP16506.complete
CGGACGTCAAAAACTGCAATTATAAGAGTACACGCACAGATTGTGGTTCT
TGGCAGGCACAGACTTTCACTGCGTGTGACAGCGATCGCTAGTGCAAGTT
ACCCGTTCGCAGTCAAAGTGACACAGGCATCAGGATGAGCGCACCTGGCA
TGGACAAGAGAAAACTGTCGACATCTGGCGACTCGCTTTACGAGATCTTA
GGACTTCCGAAGACAGCCACCGGAGATGATATTAAAAAGACTTACCGGAA
ACTCGCACTCAAATACCATCCCGATAAGAACCCGGACAATGTGGATGCGG
CTGATAAGTTCAAGGAAGTCAACCGGGCCCACTCGATATTGAGCGACCAG
ACGAAGCGCAACATATACGACAACTACGGCTCTTTGGGCTTGTACATAGC
CGAGCAGTTTGGCGAGGAGAATGTCAACGCATACTTCGTGGTCACTTCAC
CGGCTGTAAAGGCGGTGGTTATCTGCTGTGCCGTGATCACTGGATGCTGT
TGTTGCTGCTGCTGCTGCTGCTGTTGCAACTTCTGCTGCGGCAAGTTCAA
GCCGCCGGTCAACGAGTCGCACGATCAGTATTCACATCTGAATGAGGACG
TTGACCTAGACGACGTTAACTTGGGTGCGGGCGGAGCCCCCGTTACCTCA
CAGCCGCGGGAACAGGCCGGAGGACAGCCTGTTTTCGCCATGCCGCCGCC
CAGTGGAGCCGTGGGAGTAAACCCCTTCACCGGCGCCCCTGTAGCAGCTA
ACGAGAATACGTCGCTAAACACAACGGAGCAGACCACTTACACGCCAGAT
ATGGTTAATCAAAAATATTAGTCAAGTGCTGCGAGCGAGTCAAGACCCGG
GTGCTTGCGTACACCACACATTCAGATACAGACACAGAAAACACAAGCCC
CTAAATCGTAACAGAAGAGAAAACCAGATTTATTTCATAATTATTAGTGT
TGTTTTTAAAATGCGCGATATGTTGAAGCGAGTAAACATAGAAACCAATG
TAAAAAAAAAAAAAAAAAAAAAA

IP16506.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:32:24
Subject Length Description Subject Range Query Range Score Percent Strand
Csp-RC 2677 Csp-RC 359..1360 1..1002 5010 100 Plus
Csp-RA 3232 Csp-RA 359..1160 1..802 3995 99.8 Plus
Csp-RB 2740 Csp-RB 359..951 1..593 2965 100 Plus
Csp-RB 2740 Csp-RB 1014..1423 593..1002 2050 100 Plus
Csp-RA 3232 Csp-RA 1761..1966 797..1002 1030 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:16:37
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 22260473..22260681 594..802 1030 99.5 Plus
chr3L 24539361 chr3L 22261282..22261486 797..1001 1025 100 Plus
chr3L 24539361 chr3L 22256534..22256703 1..170 850 100 Plus
chr3L 24539361 chr3L 22258487..22258642 307..462 780 100 Plus
chr3L 24539361 chr3L 22258268..22258406 170..308 695 100 Plus
chr3L 24539361 chr3L 22258702..22258836 460..594 675 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:28:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:16:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22271558..22271766 594..802 1030 99.5 Plus
3L 28110227 3L 22272367..22272572 797..1002 1030 100 Plus
3L 28110227 3L 22267619..22267788 1..170 850 100 Plus
3L 28110227 3L 22269572..22269727 307..462 780 100 Plus
3L 28110227 3L 22269353..22269491 170..308 695 100 Plus
3L 28110227 3L 22269787..22269921 460..594 675 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:48:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 22265467..22265672 797..1002 1030 100 Plus
3L 28103327 3L 22264658..22264866 594..802 1030 99.5 Plus
3L 28103327 3L 22260719..22260888 1..170 850 100 Plus
3L 28103327 3L 22262672..22262827 307..462 780 100 Plus
3L 28103327 3L 22262453..22262591 170..308 695 100 Plus
3L 28103327 3L 22262887..22263021 460..594 675 100 Plus
Blast to na_te.dros performed on 2019-03-16 05:16:36 has no hits.

IP16506.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:17:21 Download gff for IP16506.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 22258268..22258406 170..308 100 -> Plus
chr3L 22258489..22258641 309..461 100 -> Plus
chr3L 22258704..22258835 462..593 65 -> Plus
chr3L 22260473..22260677 594..798 100 -> Plus
chr3L 22256534..22256702 1..169 100 -> Plus
chr3L 22261284..22261486 799..1001 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:10:53 Download gff for IP16506.complete
Subject Subject Range Query Range Percent Splice Strand
Csp-RC 1..687 135..821 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:48:33 Download gff for IP16506.complete
Subject Subject Range Query Range Percent Splice Strand
Csp-RC 1..687 135..821 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:17:13 Download gff for IP16506.complete
Subject Subject Range Query Range Percent Splice Strand
Csp-RC 1..687 135..821 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:02:03 Download gff for IP16506.complete
Subject Subject Range Query Range Percent Splice Strand
Csp-RC 1..687 135..821 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-06-22 10:11:23 Download gff for IP16506.complete
Subject Subject Range Query Range Percent Splice Strand
Csp-RC 359..1359 1..1001 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:48:33 Download gff for IP16506.complete
Subject Subject Range Query Range Percent Splice Strand
Csp-RC 359..1359 1..1001 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:17:13 Download gff for IP16506.complete
Subject Subject Range Query Range Percent Splice Strand
Csp-RC 52..1052 1..1001 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:02:03 Download gff for IP16506.complete
Subject Subject Range Query Range Percent Splice Strand
Csp-RC 52..1052 1..1001 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:17:21 Download gff for IP16506.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22267619..22267787 1..169 100 -> Plus
3L 22269353..22269491 170..308 100 -> Plus
3L 22269574..22269726 309..461 100 -> Plus
3L 22269789..22269920 462..593 100 -> Plus
3L 22271558..22271762 594..798 100 -> Plus
3L 22272369..22272571 799..1001 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:17:21 Download gff for IP16506.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22267619..22267787 1..169 100 -> Plus
3L 22269353..22269491 170..308 100 -> Plus
3L 22269574..22269726 309..461 100 -> Plus
3L 22269789..22269920 462..593 100 -> Plus
3L 22271558..22271762 594..798 100 -> Plus
3L 22272369..22272571 799..1001 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:17:21 Download gff for IP16506.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22267619..22267787 1..169 100 -> Plus
3L 22269353..22269491 170..308 100 -> Plus
3L 22269574..22269726 309..461 100 -> Plus
3L 22269789..22269920 462..593 100 -> Plus
3L 22271558..22271762 594..798 100 -> Plus
3L 22272369..22272571 799..1001 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:17:13 Download gff for IP16506.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22260719..22260887 1..169 100 -> Plus
arm_3L 22262453..22262591 170..308 100 -> Plus
arm_3L 22265469..22265671 799..1001 100   Plus
arm_3L 22262674..22262826 309..461 100 -> Plus
arm_3L 22262889..22263020 462..593 100 -> Plus
arm_3L 22264658..22264862 594..798 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:24:10 Download gff for IP16506.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22264658..22264862 594..798 100 -> Plus
3L 22265469..22265671 799..1001 100   Plus
3L 22260719..22260887 1..169 100 -> Plus
3L 22262453..22262591 170..308 100 -> Plus
3L 22262674..22262826 309..461 100 -> Plus
3L 22262889..22263020 462..593 100 -> Plus

IP16506.hyp Sequence

Translation from 134 to 820

> IP16506.hyp
MSAPGMDKRKLSTSGDSLYEILGLPKTATGDDIKKTYRKLALKYHPDKNP
DNVDAADKFKEVNRAHSILSDQTKRNIYDNYGSLGLYIAEQFGEENVNAY
FVVTSPAVKAVVICCAVITGCCCCCCCCCCCNFCCGKFKPPVNESHDQYS
HLNEDVDLDDVNLGAGGAPVTSQPREQAGGQPVFAMPPPSGAVGVNPFTG
APVAANENTSLNTTEQTTYTPDMVNQKY*

IP16506.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:22:01
Subject Length Description Subject Range Query Range Score Percent Strand
Csp-PC 228 CG6395-PC 1..228 1..228 1250 100 Plus
Csp-PF 249 CG6395-PF 1..249 1..228 1218 91.6 Plus
Csp-PB 249 CG6395-PB 1..249 1..228 1218 91.6 Plus
Csp-PA 223 CG6395-PA 1..221 1..221 1212 100 Plus
Csp-PE 244 CG6395-PE 1..242 1..221 1180 91.3 Plus

IP16506.pep Sequence

Translation from 134 to 820

> IP16506.pep
MSAPGMDKRKLSTSGDSLYEILGLPKTATGDDIKKTYRKLALKYHPDKNP
DNVDAADKFKEVNRAHSILSDQTKRNIYDNYGSLGLYIAEQFGEENVNAY
FVVTSPAVKAVVICCAVITGCCCCCCCCCCCNFCCGKFKPPVNESHDQYS
HLNEDVDLDDVNLGAGGAPVTSQPREQAGGQPVFAMPPPSGAVGVNPFTG
APVAANENTSLNTTEQTTYTPDMVNQKY*

IP16506.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:12:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10972-PA 250 GF10972-PA 1..250 1..228 1147 88 Plus
Dana\GF15175-PA 346 GF15175-PA 6..72 19..86 219 61.8 Plus
Dana\GF12761-PA 351 GF12761-PA 5..71 19..84 209 56.7 Plus
Dana\GF10450-PA 354 GF10450-PA 2..72 15..86 207 54.2 Plus
Dana\GF23490-PA 130 GF23490-PA 2..72 15..86 196 50 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:12:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16248-PA 249 GG16248-PA 1..249 1..228 1179 91.6 Plus
Dere\GG24779-PA 350 GG24779-PA 2..72 15..86 231 62.5 Plus
Dere\GG10228-PA 389 GG10228-PA 5..71 17..86 212 60 Plus
Dere\DnaJ-1-PA 351 GG14117-PA 2..72 15..86 210 54.2 Plus
Dere\GG13187-PA 127 GG13187-PA 2..72 15..86 190 48.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:12:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16687-PA 262 GH16687-PA 1..262 1..228 957 79.8 Plus
Dgri\GH15011-PA 353 GH15011-PA 2..72 15..86 220 58.3 Plus
Dgri\GH11404-PA 346 GH11404-PA 2..72 15..86 212 56.9 Plus
Dgri\GH10346-PA 397 GH10346-PA 5..71 17..86 205 55.7 Plus
Dgri\GH16902-PA 127 GH16902-PA 2..72 15..86 194 51.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:45:04
Subject Length Description Subject Range Query Range Score Percent Strand
Csp-PC 228 CG6395-PC 1..228 1..228 1250 100 Plus
Csp-PF 249 CG6395-PF 1..249 1..228 1218 91.6 Plus
Csp-PB 249 CG6395-PB 1..249 1..228 1218 91.6 Plus
Csp-PA 223 CG6395-PA 1..221 1..221 1212 100 Plus
Csp-PE 244 CG6395-PE 1..242 1..221 1180 91.3 Plus
Csp-PD 244 CG6395-PD 1..242 1..221 1180 91.3 Plus
CG5001-PC 346 CG5001-PC 2..72 15..86 235 63.9 Plus
CG5001-PD 350 CG5001-PD 2..72 15..86 235 63.9 Plus
CG5001-PA 350 CG5001-PA 2..72 15..86 235 63.9 Plus
CG5001-PB 350 CG5001-PB 2..72 15..86 235 63.9 Plus
mrj-PA 259 CG8448-PA 5..73 19..86 217 58 Plus
mrj-PC 259 CG8448-PC 5..73 19..86 217 58 Plus
mrj-PB 259 CG8448-PB 5..73 19..86 217 58 Plus
mrj-PD 259 CG8448-PD 5..73 19..86 217 58 Plus
DnaJ-1-PA 334 CG10578-PA 2..72 15..86 212 56.9 Plus
DnaJ-1-PB 334 CG10578-PB 2..72 15..86 212 56.9 Plus
DnaJ-H-PA 389 CG9828-PA 5..71 17..86 200 55.7 Plus
DnaJ-H-PB 389 CG9828-PB 5..71 17..86 200 55.7 Plus
DnaJ-H-PC 440 CG9828-PC 5..71 17..86 200 55.7 Plus
l(2)tid-PE 445 CG5504-PE 53..141 9..93 199 48.3 Plus
l(2)tid-PA 447 CG5504-PA 53..141 9..93 199 48.3 Plus
l(2)tid-PC 507 CG5504-PC 53..141 9..93 199 48.3 Plus
l(2)tid-PD 514 CG5504-PD 53..141 9..93 199 48.3 Plus
l(2)tid-PB 520 CG5504-PB 53..141 9..93 199 48.3 Plus
mrj-PG 346 CG8448-PG 5..71 19..84 196 55.2 Plus
mrj-PH 346 CG8448-PH 5..71 19..84 196 55.2 Plus
mrj-PE 346 CG8448-PE 5..71 19..84 196 55.2 Plus
Droj2-PE 403 CG8863-PE 8..72 19..86 189 51.5 Plus
Droj2-PD 403 CG8863-PD 8..72 19..86 189 51.5 Plus
Droj2-PC 403 CG8863-PC 8..72 19..86 189 51.5 Plus
Droj2-PB 403 CG8863-PB 8..72 19..86 189 51.5 Plus
Droj2-PA 403 CG8863-PA 8..72 19..86 189 51.5 Plus
CG7130-PA 128 CG7130-PA 2..72 15..86 186 48.6 Plus
shv-PA 354 CG4164-PA 20..90 12..82 168 43.7 Plus
CG3061-PA 370 CG3061-PA 99..170 9..82 165 50 Plus
CG17187-PA 299 CG17187-PA 10..72 17..79 161 46 Plus
CG7133-PA 353 CG7133-PA 9..66 19..79 161 47.5 Plus
CG2790-PA 540 CG2790-PA 5..68 19..81 161 46.9 Plus
CG2887-PA 342 CG2887-PA 6..71 19..85 156 46.3 Plus
CG11035-PB 231 CG11035-PB 27..89 17..79 149 42.9 Plus
CG11035-PA 231 CG11035-PA 27..89 17..79 149 42.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:12:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11373-PA 249 GI11373-PA 4..249 5..228 986 86.6 Plus
Dmoj\GI13174-PA 352 GI13174-PA 2..72 15..86 224 59.7 Plus
Dmoj\GI11521-PA 505 GI11521-PA 2..95 15..117 221 44.7 Plus
Dmoj\Tes40-PA 380 GI21193-PA 5..77 17..96 219 58.8 Plus
Dmoj\GI14539-PA 347 GI14539-PA 2..72 15..86 212 58.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:12:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20793-PA 158 GL20793-PA 1..154 1..153 663 93.5 Plus
Dper\GL15626-PA 318 GL15626-PA 2..72 15..86 224 59.7 Plus
Dper\GL25452-PA 129 GL25452-PA 2..122 15..143 216 37.2 Plus
Dper\GL20776-PA 230 GL20776-PA 5..72 18..86 206 56.5 Plus
Dper\GL10681-PA 357 GL10681-PA 5..71 19..84 203 55.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:12:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19562-PA 250 GA19562-PA 1..250 1..228 1043 87.6 Plus
Dpse\GA18584-PA 346 GA18584-PA 2..72 15..86 223 59.7 Plus
Dpse\GA10408-PA 353 GA10408-PA 5..72 18..86 207 56.5 Plus
Dpse\GA21086-PA 357 GA21086-PA 5..71 19..84 203 55.2 Plus
Dpse\GA22062-PA 392 GA22062-PA 5..71 17..86 199 55.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:12:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22437-PA 249 GM22437-PA 1..249 1..228 1175 91.2 Plus
Dsec\GM16806-PA 350 GM16806-PA 2..72 15..86 237 63.9 Plus
Dsec\DnaJ-1-PA 337 GM13903-PA 2..72 15..86 204 52.8 Plus
Dsec\GM20081-PA 344 GM20081-PA 5..71 19..84 199 53.7 Plus
Dsec\GM22099-PA 128 GM22099-PA 2..72 15..86 197 50 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:12:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17653-PA 189 GD17653-PA 6..155 5..154 760 94.7 Plus
Dsim\GD23083-PA 346 GD23083-PA 2..72 15..86 237 63.9 Plus
Dsim\DnaJ-1-PA 352 GD13179-PA 2..72 15..86 209 54.2 Plus
Dsim\GD25559-PA 346 GD25559-PA 5..71 19..84 199 53.7 Plus
Dsim\GD12075-PA 128 GD12075-PA 2..72 15..86 197 50 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:12:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11627-PA 245 GJ11627-PA 1..245 1..223 961 85.7 Plus
Dvir\GJ16971-PA 347 GJ16971-PA 2..72 15..86 222 61.1 Plus
Dvir\GJ11949-PA 351 GJ11949-PA 2..69 15..83 211 58 Plus
Dvir\GJ14805-PA 325 GJ14805-PA 2..72 15..86 205 55.6 Plus
Dvir\GJ11775-PA 124 GJ11775-PA 2..72 15..86 201 52.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:12:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17108-PA 253 GK17108-PA 1..253 1..228 1019 85.8 Plus
Dwil\GK15183-PA 346 GK15183-PA 2..72 15..86 223 59.7 Plus
Dwil\GK16875-PA 356 GK16875-PA 2..72 15..86 213 55.6 Plus
Dwil\GK19767-PA 330 GK19767-PA 2..72 15..86 209 55.6 Plus
Dwil\GK14806-PA 396 GK14806-PA 5..71 17..86 205 57.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:12:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22607-PA 249 GE22607-PA 1..249 1..228 1177 91.2 Plus
Dyak\GE17451-PA 350 GE17451-PA 2..72 15..86 231 62.5 Plus
Dyak\DnaJ-1-PA 351 GE20542-PA 2..72 15..86 212 54.2 Plus
Dyak\GE22992-PA 127 GE22992-PA 2..72 15..86 200 51.4 Plus
Dyak\GE19512-PA 127 GE19512-PA 2..72 15..86 200 51.4 Plus