Clone IP16603 Report

Search the DGRC for IP16603

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:166
Well:3
Vector:pOT2
Associated Gene/TranscriptRpS18-RA
Protein status:IP16603.pep: gold
Sequenced Size:1034

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
RpS18 2008-04-29 Release 5.5 accounting
RpS18 2008-08-15 Release 5.9 accounting
CG8908 2008-08-15 Release 5.9 accounting
RpS18 2008-12-18 5.12 accounting
CG8908 2008-12-18 5.12 accounting

Clone Sequence Records

IP16603.complete Sequence

1034 bp (1034 high quality bases) assembled on 2006-03-22

GenBank Submission: BT024929

> IP16603.complete
TGAGGAGTAAATACGAGAATACAAACGGCAAAATGTCGCTCGTCATCCCA
GAGAAGTTCCAGCACATCCTGCGTATCATGAATACGAACATCGACGGCAA
GCGCAAGGTTGGCATCGCCATGACCGCCATCAAGGGAGTGGGTCGCCGCT
ACTCCAACATTGTGCTGAAGAAGGCCGATGTCGATCTTACCAAGCGCGCC
GGTGAGTGCACCGAGGAGGAGGTCGACAAGGTGGTGACCATCATCTCGAA
CCCTCTGCAGTACAAGGTGCCCAACTGGTTCCTCAACAGGCAGAAGGACA
TCATCGATGGCAAGTACTGGCAGCTGACCTCCTCCAACTTGGACTCGAAG
CTGCGTGACGATCTGGAGCGTCTGAAGAAGATCCGCTCCCACCGTGGTCT
GCGTCACTACTGGGGCCTCCGTGTGCGTGGCCAGCACACCAAGACCACCG
GTCGTCGTGGTCGCACCGTGGGTGTGTCCAAGAAGAAGTAAGCTTAGCAG
CGTTCCCTGCCGGAACGGATTTCCGATTCGACTTTAATTTTCACATCAAC
CACAAAATAAAAGAAAACACGGAAGCCGGAACGTTTTAGTGCGGAGTATA
CGTGAAGTTTGTTATATTTCTAATCTGTTTACGTGTTGGCGTCATCTAAA
TTGTACGAATATGTCCAGTGGTGAATCGCCGGTGAAGACGCAGAGCAGCA
TATGCCTGCTGTGGCTGGTCATATGCAAGACGGCCCGCTTCCAGTTCTCC
AATACGCTAACCAGCGTGATCATCATTGTGGGGCCCATCGTAGTCTTCCT
CGTTTATGCGGCGACGGCTTTGTTCCGAGAGCCGCAAGAGGAGACGTCGG
TGAAGTACCCGCCCGTCAACATCACAACCAAAGTGCCGTACATTTACTAC
TCACCTGAGAATCTAGTCTTGGCTGCTGTCATCGAGGATGTGGTTCACGA
TCTGAAGGCCGTTGGCAGTAAGGCCTTTGCCAGCGCATCTGAATTGAATA
AAGCGCTGATAGGAAAGGAAAAAAAAAAAAAAAA

IP16603.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:34:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG8908.f 5871 CG8908.f 299..1098 220..1019 4000 100 Plus
CG8908.g 5991 CG8908.g 299..1098 220..1019 4000 100 Plus
CG8908.e 5702 CG8908.e 249..1048 220..1019 4000 100 Plus
CG8908.f 5871 CG8908.f 54..242 35..223 945 100 Plus
CG8908.g 5991 CG8908.g 54..242 35..223 945 100 Plus
CG8908.e 5702 CG8908.e 4..192 35..223 945 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-17 00:06:05
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 16151531..16152201 220..890 3280 99.3 Plus
chr2R 21145070 chr2R 16151286..16151474 35..223 945 100 Plus
chr2R 21145070 chr2R 16152263..16152393 888..1018 655 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:28:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 00:06:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20264491..20265161 220..890 3355 100 Plus
2R 25286936 2R 20264246..20264434 35..223 945 100 Plus
2R 25286936 2R 20265223..20265354 888..1019 660 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:24:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 20265690..20266360 220..890 3355 100 Plus
2R 25260384 2R 20265445..20265633 35..223 945 100 Plus
2R 25260384 2R 20266422..20266553 888..1019 660 100 Plus
2R 25260384 2R 20265275..20265309 1..35 175 100 Plus
Blast to na_te.dros performed on 2019-03-17 00:06:04 has no hits.

IP16603.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 00:06:43 Download gff for IP16603.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 16151287..16151472 36..221 100 -> Plus
chr2R 16151115..16151149 1..35 100 -> Plus
chr2R 16151533..16152198 222..887 99 -> Plus
chr2R 16152263..16152393 888..1018 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:03:34 Download gff for IP16603.complete
Subject Subject Range Query Range Percent Splice Strand
RpS18-RA 1..459 33..491 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:58:14 Download gff for IP16603.complete
Subject Subject Range Query Range Percent Splice Strand
RpS18-RA 1..459 33..491 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:57:53 Download gff for IP16603.complete
Subject Subject Range Query Range Percent Splice Strand
RpS18-RB 1..459 33..491 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:38:59 Download gff for IP16603.complete
Subject Subject Range Query Range Percent Splice Strand
RpS18-RA 1..459 33..491 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:12:01 Download gff for IP16603.complete
Subject Subject Range Query Range Percent Splice Strand
RpS18-RB 1..459 33..491 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:38:20 Download gff for IP16603.complete
Subject Subject Range Query Range Percent Splice Strand
RpS18-RA 9..631 1..623 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:58:13 Download gff for IP16603.complete
Subject Subject Range Query Range Percent Splice Strand
RpS18-RA 55..677 1..623 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:57:53 Download gff for IP16603.complete
Subject Subject Range Query Range Percent Splice Strand
RpS18-RB 30..606 1..577 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:38:59 Download gff for IP16603.complete
Subject Subject Range Query Range Percent Splice Strand
RpS18-RA 9..631 1..623 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:12:01 Download gff for IP16603.complete
Subject Subject Range Query Range Percent Splice Strand
RpS18-RB 30..606 1..577 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:06:43 Download gff for IP16603.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20264076..20264110 1..35 100 -> Plus
2R 20264247..20264432 36..221 100 -> Plus
2R 20264493..20265158 222..887 100 -> Plus
2R 20265223..20265353 888..1018 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:06:43 Download gff for IP16603.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20264076..20264110 1..35 100 -> Plus
2R 20264247..20264432 36..221 100 -> Plus
2R 20264493..20265158 222..887 100 -> Plus
2R 20265223..20265353 888..1018 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:06:43 Download gff for IP16603.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20264076..20264110 1..35 100 -> Plus
2R 20264247..20264432 36..221 100 -> Plus
2R 20264493..20265158 222..887 100 -> Plus
2R 20265223..20265353 888..1018 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:57:53 Download gff for IP16603.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16151752..16151937 36..221 100 -> Plus
arm_2R 16151581..16151615 1..35 100 -> Plus
arm_2R 16151998..16152663 222..887 100 -> Plus
arm_2R 16152728..16152858 888..1018 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:17:41 Download gff for IP16603.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20265692..20266357 222..887 100 -> Plus
2R 20266422..20266552 888..1018 100   Plus
2R 20265275..20265309 1..35 100 -> Plus
2R 20265446..20265631 36..221 100 -> Plus

IP16603.hyp Sequence

Translation from 2 to 490

> IP16603.hyp
RSKYENTNGKMSLVIPEKFQHILRIMNTNIDGKRKVGIAMTAIKGVGRRY
SNIVLKKADVDLTKRAGECTEEEVDKVVTIISNPLQYKVPNWFLNRQKDI
IDGKYWQLTSSNLDSKLRDDLERLKKIRSHRGLRHYWGLRVRGQHTKTTG
RRGRTVGVSKKK*

IP16603.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:22:09
Subject Length Description Subject Range Query Range Score Percent Strand
RpS18-PA 152 CG8900-PA 1..152 11..162 789 100 Plus
RpS18-PB 152 CG8900-PB 1..152 11..162 789 100 Plus

IP16603.pep Sequence

Translation from 32 to 490

> IP16603.pep
MSLVIPEKFQHILRIMNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADV
DLTKRAGECTEEEVDKVVTIISNPLQYKVPNWFLNRQKDIIDGKYWQLTS
SNLDSKLRDDLERLKKIRSHRGLRHYWGLRVRGQHTKTTGRRGRTVGVSK
KK*

IP16603.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:44:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\RpS18-PA 152 GF12254-PA 1..152 1..152 790 99.3 Plus
Dana\GF22723-PA 97 GF22723-PA 1..95 1..95 496 97.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:44:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\RpS18-PA 152 GG22020-PA 1..152 1..152 791 100 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:44:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23036-PA 162 GH23036-PA 12..162 2..152 773 98.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:06:20
Subject Length Description Subject Range Query Range Score Percent Strand
RpS18-PA 152 CG8900-PA 1..152 1..152 789 100 Plus
RpS18-PB 152 CG8900-PB 1..152 1..152 789 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:44:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21106-PA 158 GI21106-PA 8..158 2..152 778 99.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:44:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16906-PA 152 GL16906-PA 1..152 1..152 788 99.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:44:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21399-PA 152 GA21399-PA 1..152 1..152 788 99.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:44:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\RpS18-PA 152 GM22001-PA 1..152 1..152 791 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:44:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\RpS18-PA 152 GD11500-PA 1..152 1..152 791 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:44:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\RpS18-PA 152 GJ20954-PA 1..152 1..152 782 99.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:44:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\RpS18-PA 152 GK15910-PA 1..152 1..152 779 98.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:44:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\RpS18-PA 152 GE12097-PA 1..152 1..152 791 100 Plus