Clone IP16860 Report

Search the DGRC for IP16860

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:168
Well:60
Vector:pOT2
Associated Gene/TranscriptNplp1-RB
Protein status:IP16860.pep: gold
Sequenced Size:2318

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Nplp1 2008-04-29 Release 5.5 accounting
Nplp1 2008-08-15 Release 5.9 accounting
Nplp1 2008-12-18 5.12 accounting

Clone Sequence Records

IP16860.complete Sequence

2318 bp assembled on 2007-01-11

GenBank Submission: BT030135

> IP16860.complete
GACGACTTTGCGGCTAACGTTAGTGTTACGGCAGCTGGCAAACGGCAAAG
CTTCGCGTCCGTGTTTCCGTTACGGTTTAAATCGGTTTGGAAGTGGGTGC
TGCAAAAGGGCAGTTCAATTTGTGAGGCAGTGCGAGTGTGGTCGATCCTT
TTGTCGCGTTGCAAACGAACGAAACTCACTTAACAGTTGAGCCGCCCCCA
GGACGACATCCACGATGCAGGCGGTGCTCCAATCTGCGCACAGCAGCAGG
CGGCTAATGCTGTTGCTCTCCATGCTGCTCAATGCCGCTATTCAGCCACG
GTCCATTATTGTGAGTGCTACTGATGATGTCGCCAATGTGTCGCCGTGCG
AAATGGAGTCCCTTATAAATCAACTGATGAGCCCCAGTCCCGAGTACCAG
CTTCACGCCTCCGCATTGCGCAATCAACTGAAAAACTTACTTCGGGAAAG
ACAGTTGGCCGTGGGCGAAGAACAGCCTTTGGGCGAGTACCCCGATTATC
TGGAGGAGGACAAACGTTCGGTGGCCGCACTGGCCGCCCAAGGCCTCCTT
AACGCTCCGAAGAGAAGCTTGGCCACTCTGGCTAAAAACGGGCAACTGCC
CACGGCAGAGCCTGGAGAGGATTACGGCGACGCGGACTCCGGAGAACCGA
GTGAACAGAAGCGCTACATCGGCTCCTTGGCCAGGGCCGGCGGATTGATG
ACATATGGAAAGCGCAACGTGGGCACCCTGGCCCGCGACTTCCAGCTGCC
TATTCCCAACGGCAAGCGAAACATCGCAACTATGGCCCGTCTGCAGAGTG
CTCCCTCCACCCACCGAGATCCAAAGCGCAATGTGGCCGCCGTCGCACGC
TACAACTCGCAGCACGGTCACATCCAGCGTGCTGGGGCCGAGAAACGTAA
CCTGGGAGCTCTGAAGTCCTCGCCGGTCCACGGAGTGCAGCAGAAGCGCG
AGGATGAAGAGATGCTGTTGCCCGCGGCCGCCCCCGACTACGCCGATCCC
ATGCAGAGCTACTGGTGGTACCCCAGCTACGCCGGGTACGCCGACCTCGA
CTGGAACGATTATCGCCGGGCAGAGAAGCGATTCCTAGACACATCCAAGG
ATCCCGAATTGTTCGGCATCGAGCATGGCAACGATGCCACTACTGCAGAA
CCCGCAGACGAGGCGTATATGGAGTCGGATGCGGAGGCCGGGAGCGAGCA
GTTGCCATCGCCGCAGAAGCGTCACATAGGCGCCGTTTATCGCTCCGGAT
TCCTGCCCAGTTACCGCTACCTGCGCAGCCCTGGGGGCAGTAGTGGTTTT
GGCGGGGCCGGGGGGCGTTTTAGTCGCTCGGGACGTGACGCCAGGCAATT
TGTATGAGCCGGGTACTTCCACCAACACGAGCGACTGCGTCAACCCACCG
CAGCCGTTTGTAAGCAGTGTTTCATACCTAACCAACCGATGATCAATTGG
AGTGGTGCTGGCGTACGCGGTCGTCTGTCCAATTACTATGTGGATCCCGA
GTCCTCATTAGCGCGCTTGCCGAGCCTGTCAAGTAACTCGCTGCCATCAG
GACGCCCTCCGCGCCCGCTCCTGCGCTCAGGGGCTCCAGTCTATCCGCCC
TTCCACACCTGGGGCACTCCGCCGCGTATCACAGCACTGCATCGACGAGA
ATTTCGACGCAACTCGCAAAATTACGAATACTAAATATCGACAATATACT
CTTTATGCAAATAACGCGATACAGATTTCCTTAGTACAGAAGTCGGAAAA
TATACCTATACAGTGTATGTATTTAGTGTAAATCCCCCAAATGTAATGTC
ACACACTACACCTGCGAACCTTGCGACTACTAAGTCTAGCGCGTAAACCG
GAGAGCTGTAGGATCTGTATGGCTATTGCTATAACTATCAAATATATTTA
TGAAACTGAAGTAACTGATATCAGTGCAAAGCATAAACACGATATATATC
AAAGCAAATCATATCCTCTGTATAATTTAAATTCTTAAAAGAAGTTTTAA
AATAGTGCTAGTGTGGTACCTTGCAAGAACTTGAACTTCATAAAATATCT
TTATCCTTTATTGCTAACTTACTGATAACAGTTTAGATTGTTTTCCCTGG
CGTCTTTTATGTGTAAATGACAATAACTGTTTCCACTAGGTAAAAGCTAA
AAGTTGCCATCAACGATCACTGATATATGAAAGCGTTAACAAACTGCGTC
AAAGACAATAAAACTAAAGAAAATCTCGATTTATATATATACTTATAAAT
ATATTATACTTTAATGTATTCAAGACAATAAAAAAATATTGACAATAAAA
AAAAAAAAAAAAAAAAAA

IP16860.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:09:36
Subject Length Description Subject Range Query Range Score Percent Strand
Nplp1-RB 2518 Nplp1-RB 101..2400 1..2300 11500 100 Plus
Nplp1-RC 2410 Nplp1-RC 15..2308 1..2300 11385 99.7 Plus
Nplp1.d 2112 Nplp1.d 1166..2108 1358..2300 4715 100 Plus
Nplp1.d 2112 Nplp1.d 484..1165 407..1088 3410 100 Plus
Nplp1.d 2112 Nplp1.d 15..421 1..407 2035 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:07:17
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 20924975..20925913 1358..2296 4680 99.9 Plus
chr2R 21145070 chr2R 20922769..20923454 403..1088 3415 99.9 Plus
chr2R 21145070 chr2R 20918318..20918604 1..287 1435 100 Plus
chr2R 21145070 chr2R 20923624..20923895 1087..1358 1345 99.6 Plus
chr2R 21145070 chr2R 20922517..20922637 287..407 605 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:28:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:07:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 25039051..25039993 1358..2300 4715 100 Plus
2R 25286936 2R 25036845..25037530 403..1088 3415 99.9 Plus
2R 25286936 2R 25032394..25032680 1..287 1435 100 Plus
2R 25286936 2R 25037700..25037971 1087..1358 1360 100 Plus
2R 25286936 2R 25036593..25036713 287..407 605 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:03:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 25040250..25041192 1358..2300 4715 100 Plus
2R 25260384 2R 25038044..25038729 403..1088 3415 99.8 Plus
2R 25260384 2R 25033593..25033879 1..287 1435 100 Plus
2R 25260384 2R 25038899..25039170 1087..1358 1360 100 Plus
2R 25260384 2R 25037792..25037912 287..407 605 100 Plus
Blast to na_te.dros performed on 2019-03-16 18:07:15 has no hits.

IP16860.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:08:07 Download gff for IP16860.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 20923626..20923894 1089..1357 99 -> Plus
chr2R 20918318..20918603 1..286 100 -> Plus
chr2R 20922517..20922636 287..406 100 -> Plus
chr2R 20922773..20923454 407..1088 100 -> Plus
chr2R 20924975..20925913 1358..2296 96   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:04:15 Download gff for IP16860.complete
Subject Subject Range Query Range Percent Splice Strand
Nplp1-RC 1..1464 215..1684 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:14:00 Download gff for IP16860.complete
Subject Subject Range Query Range Percent Splice Strand
Nplp1-RC 1..1464 215..1684 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:09:53 Download gff for IP16860.complete
Subject Subject Range Query Range Percent Splice Strand
Nplp1-RC 1..1464 215..1684 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:24:10 Download gff for IP16860.complete
Subject Subject Range Query Range Percent Splice Strand
Nplp1-RC 1..1464 215..1684 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:31:10 Download gff for IP16860.complete
Subject Subject Range Query Range Percent Splice Strand
Nplp1-RC 1..1464 215..1684 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:42:30 Download gff for IP16860.complete
Subject Subject Range Query Range Percent Splice Strand
Nplp1-RB 15..2310 1..2296 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:14:00 Download gff for IP16860.complete
Subject Subject Range Query Range Percent Splice Strand
Nplp1-RB 15..2310 1..2296 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:09:53 Download gff for IP16860.complete
Subject Subject Range Query Range Percent Splice Strand
Nplp1-RB 18..2313 1..2296 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:24:10 Download gff for IP16860.complete
Subject Subject Range Query Range Percent Splice Strand
Nplp1-RB 15..2310 1..2296 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:31:10 Download gff for IP16860.complete
Subject Subject Range Query Range Percent Splice Strand
Nplp1-RB 18..2313 1..2296 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:08:07 Download gff for IP16860.complete
Subject Subject Range Query Range Percent Splice Strand
2R 25032394..25032679 1..286 100 -> Plus
2R 25036593..25036712 287..406 100 -> Plus
2R 25036849..25037530 407..1088 100 -> Plus
2R 25037702..25037970 1089..1357 100 -> Plus
2R 25039051..25039989 1358..2296 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:08:07 Download gff for IP16860.complete
Subject Subject Range Query Range Percent Splice Strand
2R 25032394..25032679 1..286 100 -> Plus
2R 25036593..25036712 287..406 100 -> Plus
2R 25036849..25037530 407..1088 100 -> Plus
2R 25037702..25037970 1089..1357 100 -> Plus
2R 25039051..25039989 1358..2296 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:08:07 Download gff for IP16860.complete
Subject Subject Range Query Range Percent Splice Strand
2R 25032394..25032679 1..286 100 -> Plus
2R 25036593..25036712 287..406 100 -> Plus
2R 25036849..25037530 407..1088 100 -> Plus
2R 25037702..25037970 1089..1357 100 -> Plus
2R 25039051..25039989 1358..2296 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:09:53 Download gff for IP16860.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20919917..20920202 1..286 100 -> Plus
arm_2R 20924116..20924235 287..406 100 -> Plus
arm_2R 20924372..20925053 407..1088 100 -> Plus
arm_2R 20925225..20925493 1089..1357 100 -> Plus
arm_2R 20926574..20927512 1358..2296 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:45:01 Download gff for IP16860.complete
Subject Subject Range Query Range Percent Splice Strand
2R 25033611..25033896 1..286 100 -> Plus
2R 25037810..25037929 287..406 100 -> Plus
2R 25038066..25038747 407..1088 100 -> Plus
2R 25038919..25039187 1089..1357 100 -> Plus
2R 25040268..25041206 1358..2296 100   Plus

IP16860.pep Sequence

Translation from 214 to 1356

> IP16860.pep
MQAVLQSAHSSRRLMLLLSMLLNAAIQPRSIIVSATDDVANVSPCEMESL
INQLMSPSPEYQLHASALRNQLKNLLRERQLAVGEEQPLGEYPDYLEEDK
RSVAALAAQGLLNAPKRSLATLAKNGQLPTAEPGEDYGDADSGEPSEQKR
YIGSLARAGGLMTYGKRNVGTLARDFQLPIPNGKRNIATMARLQSAPSTH
RDPKRNVAAVARYNSQHGHIQRAGAEKRNLGALKSSPVHGVQQKREDEEM
LLPAAAPDYADPMQSYWWYPSYAGYADLDWNDYRRAEKRFLDTSKDPELF
GIEHGNDATTAEPADEAYMESDAEAGSEQLPSPQKRHIGAVYRSGFLPSY
RYLRSPGGSSGFGGAGGRFSRSGRDARQFV*

IP16860.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:23:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13360-PA 490 GF13360-PA 1..385 1..380 1582 86.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:23:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23029-PA 309 GG23029-PA 1..291 1..291 1500 97.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:23:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22656-PA 511 GH22656-PA 1..391 1..380 1362 75.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:25:08
Subject Length Description Subject Range Query Range Score Percent Strand
Nplp1-PB 380 CG3441-PB 1..380 1..380 1963 100 Plus
Nplp1-PC 487 CG3441-PC 1..379 1..379 1959 100 Plus
Nplp1-PA 309 CG3441-PA 1..291 1..291 1495 100 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:23:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17643-PA 496 GL17643-PA 1..383 1..380 1558 85.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:23:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17454-PA 496 GA17454-PA 1..383 1..380 1547 84.8 Plus
Dpse\GA17454-PB 309 GA17454-PB 1..292 1..291 1341 90.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11921-PA 487 GM11921-PA 1..380 1..380 1944 97.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11917-PA 487 GD11917-PA 1..380 1..380 1954 97.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:23:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21021-PA 495 GJ21021-PA 1..382 1..380 1416 80.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:23:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21575-PA 502 GK21575-PA 1..389 1..380 1412 77.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:23:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14463-PA 487 GE14463-PA 1..380 1..380 1726 96.1 Plus

IP16860.hyp Sequence

Translation from 214 to 1356

> IP16860.hyp
MQAVLQSAHSSRRLMLLLSMLLNAAIQPRSIIVSATDDVANVSPCEMESL
INQLMSPSPEYQLHASALRNQLKNLLRERQLAVGEEQPLGEYPDYLEEDK
RSVAALAAQGLLNAPKRSLATLAKNGQLPTAEPGEDYGDADSGEPSEQKR
YIGSLARAGGLMTYGKRNVGTLARDFQLPIPNGKRNIATMARLQSAPSTH
RDPKRNVAAVARYNSQHGHIQRAGAEKRNLGALKSSPVHGVQQKREDEEM
LLPAAAPDYADPMQSYWWYPSYAGYADLDWNDYRRAEKRFLDTSKDPELF
GIEHGNDATTAEPADEAYMESDAEAGSEQLPSPQKRHIGAVYRSGFLPSY
RYLRSPGGSSGFGGAGGRFSRSGRDARQFV*

IP16860.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:24:14
Subject Length Description Subject Range Query Range Score Percent Strand
Nplp1-PB 380 CG3441-PB 1..380 1..380 1963 100 Plus
Nplp1-PC 487 CG3441-PC 1..379 1..379 1959 100 Plus
Nplp1-PA 309 CG3441-PA 1..291 1..291 1495 100 Plus