Clone IP16959 Report

Search the DGRC for IP16959

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:169
Well:59
Vector:pOT2
Associated Gene/TranscriptCG34214-RA
Protein status:IP16959.pep: gold
Sequenced Size:2734

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4806 2008-04-29 Release 5.5 accounting
CG4806 2008-08-15 Release 5.9 accounting
CG34214 2008-08-15 Release 5.9 accounting
CG4806 2008-12-18 5.12 accounting
CG34214 2008-12-18 5.12 accounting

Clone Sequence Records

IP16959.complete Sequence

2734 bp assembled on 2006-12-23

GenBank Submission: BT029945.1

> IP16959.complete
AAGAGTTCCACGTGCAAATGGAACTTAAAAAAATGAAATCTTTAAAAGAC
GACGCTGCCGAATCCCAATCTCAGCCAGAAACCGGGGTCCGGAAGCGCCG
CAACCCCTTTAACACACAGAGGCTGAAGGAAGAGAAGGAGCGCCGCCAGA
AAAAGCGAGCGCGTCTCATCGTGCGCAACATCAGTTACAAGTCCACGGAG
GACTCGCTTCGCGAGCATTTCGGGCAGTGGGGCACGCTGGAGGATGTACA
CATCCTGAAACGAGGTGACGGGAAGCTGGTGGGCTGCGCCTTTGTCCAGT
ACGAGACCATTAACCAGGCCACCAAAGCGATCCTGAACTCCAACGGCAAA
GAGCTGCTCGGGAGAAAGGTATTTGTGGACTGGGCTTTGGGCAAGGACGA
GTATGTATCAAAGAACCCGAAAGACGAGGAGCCGGATGAGAAGAAGCCAA
AGGTGGAAGTGAAAGAGGAAAACGGTGACGAGAAGGAAGTTAAGGAGGAA
AGCGACGCGGAAGTTGGCAAGGAAGATGAAAGTTCTGGGGAGGATTCTGA
TGCGGAATCCGGCGAAGATGAAGAGGACTCTGGAGAATCTGAAGACGAAG
AGAACGACGAAGATCATAAGGAGAACAAGGACGAATTAAAATCAAAATTG
GATATCAAAAATGTCAAAAGGGAAAAGCAAATCTCCAACGACGTCCAGGA
GGGCTGCACGGTCTTCATTAAAAACGTTCCCTTCGATGCAGAGGATGCCG
ACTTGAGAAAGGCGTGCCGCAAATTCGGCTTGGTCAGCTACGCCATTATT
AATCGCCAGGCGGTTTCTGGCCACTCCAAGGGTACAGCCTTCGTTAAATT
CAAAGCCAAGGAGTCAGCGGATCTTTGTCTGCAAGCTGGAACAGAGTTTA
AGTTGATGGACGAGGTCCTGGATCCTCATCCCGCATTGAGCCGCGAGGAA
ATGAAGTCGAAGCAGTCGCAGGAAAACAAAAAAGACGATGCCAAGGACTC
ACGAAACCTGTATTTGGCCAGGGAAGGTCTAATCATGGCTGGAGCGAAGG
CAGCCGATGGGGTTTCTGCCTCAGACATGGCCAAGCGACATGAACTTGAG
CAGGTTAAGACGCAGGTGCTCAAGAACTTGAATCGGTTTGTTTCCCGGAA
TCGCTTGTCCATTCACAATCTCCCCCAAAACTATGACAATGAAAAGCTGA
AACAAATGGCTCTGACTTATACTGGCTTCCGACCCCACGAATGCCGGGTG
ATGAGGGAACATAAGGTGACCCCTGAGCATCCACAGGGCAAGTCCAAGGG
CTTTGGTTTCCTATCCTTCGACACGCATCAGAGAGCTTTGGCCGCCCTAC
GGAAACTAAACAACAACCCCAATATCTTCGGAACACAGAGTCGCCCCATT
GTCGCGTTCAGTATAGAGGATCGTGCTGTGCACAAAATCAAAGAAAAGCG
CACGGAGCGCTCAAAGCAGAACAATCCCACATACCAAAACAAACAGCAGG
AGCGCAAGGAGCGACGCCAGCAAAAGCGCAATGGTCAGGAGACCAAAACT
CCAGTTCCCCAAGCAGATAATAAAAGCAAACTTCAGAAACACATTAAGAA
ACTTGAAGCTTCGCGAGCAGCGAAAGCCGAAGGTAAAGTCGCGGAGAAAA
AGCAGTTGAGCGATGTTCAGGGCGATTTTGTCGGCACGGCCGCCAAGCCG
GGCACCTCGCTGAAGATGCGATCCAAAAAGAAGATTGTAGAGCAGGCCAA
GGAACACTTGAAGAAGGTGAAAACCGAAAAGCGCAAGCAGAAGAACAAGA
AGATACGCGAGTCCCACCTGGCAGAGCGCAAGGCAAATAATCGGCCCAAG
CAAGGACGCAAGAAGGAAACGGATGACCTTCGGCCCCTAATTAATAAGTA
CAAGAACATGATTAGTGGAAACCAAGGAGGTGGCGGCGTTACGGGAGGTA
AAATCAAGAAGCCTAAGCGTACCAAGTGGTACACGGAGTAGCGCTCCCTC
TTCTAGGATAAGAAAAATCTTTTTAGCAATAAAACTGTAAATGAGAAAAT
CGATACAGGTAACTAACGGGAAAACTGGGACTTTTTCTTGGGATTAGAAA
CGGAACATCTGCTTTAGCAATGATTCTACCTGCCTGCAAGTCGCGTATTA
TGCATATATAGTCTGAGCAGTGGACCAAGTTCATTAGTATTGCATAGCAG
TGCCTGTGAAGTGCGTCGTCCGCATAAAAATAAAATTATCTTCAAGATGG
CTCCTCGAGAGAAAGTTGAATTTGTGCTGGTGCGCCTGGCCTTTGTTCCT
TACATAAATCCTCTGTACCCGCGCATCAGCTACCAGATCAGAAAGCACGC
TCCCACCGGATCGATTATCCAAGTGCGCGATTGGTTCGAGCATGTGATGA
TGAGGGAGCGCTCCAAGCTGCCCCCAGATGCTAACATACGCTACGCAGAG
TGGCGCATCATCACCGGCGACATGGAGCTGTTTCAGGTGCAGGGCGTCCG
CTTCGACAAGATCATGCTGGTGCTGGGCGAAGAAAACATCTCGTGGGTCT
TCTATCAGAACACGCCACTTTTCCGCCGTATCGAGGGCAGCGCCTGCTTC
CCTGTTAGCTACTGCGGATGCTGCCTGAACAACCAGTACCTGGATATTAT
GGCCAAAATCAAGCAAACTGTGTCGAGGAAAAAGATACGATGAAATAAAT
ATATCGAGTACTAATGGAAAAAAAAAAAAAAAAA

IP16959.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:09:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG4806-RA 2221 CG4806-RA 62..2221 1..2160 10800 100 Plus
CG34214-RA 642 CG34214-RA 1..579 2142..2720 2895 100 Plus
CG3683.a 1068 CG3683.a 880..1068 2720..2532 945 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:49:15
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 20553074..20554210 1137..1 5685 100 Minus
chr2R 21145070 chr2R 20551790..20552703 2305..1392 4570 100 Minus
chr2R 21145070 chr2R 20551319..20551730 2717..2306 2060 100 Minus
chr2R 21145070 chr2R 20552761..20553017 1391..1135 1285 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:29:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:49:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24667182..24668318 1137..1 5685 100 Minus
2R 25286936 2R 24665898..24666811 2305..1392 4570 100 Minus
2R 25286936 2R 24665424..24665838 2720..2306 2075 100 Minus
2R 25286936 2R 24666869..24667125 1391..1135 1285 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:04:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 24668381..24669517 1137..1 5685 100 Minus
2R 25260384 2R 24667097..24668010 2305..1392 4570 100 Minus
2R 25260384 2R 24666623..24667037 2720..2306 2075 100 Minus
2R 25260384 2R 24668068..24668324 1391..1135 1285 100 Minus
Blast to na_te.dros performed 2019-03-16 09:49:13
Subject Length Description Subject Range Query Range Score Percent Strand
HeT-A 6083 HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). 599..667 436..503 153 71 Plus
TAHRE 10463 TAHRE OSV 10463bp 286..354 436..503 135 70 Plus
springer 7546 springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. 596..677 675..591 120 63.5 Minus
HeT-A 6083 HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). 249..365 1484..1604 118 61.3 Plus

IP16959.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:50:19 Download gff for IP16959.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 20551319..20551730 2306..2717 100 <- Minus
chr2R 20551790..20552703 1392..2305 100 <- Minus
chr2R 20552761..20553016 1136..1391 100 <- Minus
chr2R 20553076..20554210 1..1135 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:05:19 Download gff for IP16959.complete
Subject Subject Range Query Range Percent Splice Strand
CG4806-RA 1..1974 18..1991 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:14:27 Download gff for IP16959.complete
Subject Subject Range Query Range Percent Splice Strand
CG4806-RA 1..1974 18..1991 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:48:11 Download gff for IP16959.complete
Subject Subject Range Query Range Percent Splice Strand
CG4806-RA 1..1974 18..1991 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:24:47 Download gff for IP16959.complete
Subject Subject Range Query Range Percent Splice Strand
CG4806-RA 1..1974 18..1991 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:46:21 Download gff for IP16959.complete
Subject Subject Range Query Range Percent Splice Strand
CG4806-RA 1..1974 18..1991 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:42:57 Download gff for IP16959.complete
Subject Subject Range Query Range Percent Splice Strand
CG4806-RA 13..2063 1..2051 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:14:27 Download gff for IP16959.complete
Subject Subject Range Query Range Percent Splice Strand
CG4806-RA 13..2057 1..2045 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:48:11 Download gff for IP16959.complete
Subject Subject Range Query Range Percent Splice Strand
CG4806-RA 26..2070 1..2045 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:24:47 Download gff for IP16959.complete
Subject Subject Range Query Range Percent Splice Strand
CG4806-RA 13..2063 1..2051 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:46:21 Download gff for IP16959.complete
Subject Subject Range Query Range Percent Splice Strand
CG4806-RA 26..2070 1..2045 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:50:19 Download gff for IP16959.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24665427..24665838 2306..2717 100 <- Minus
2R 24665898..24666811 1392..2305 100 <- Minus
2R 24666869..24667124 1136..1391 100 <- Minus
2R 24667184..24668318 1..1135 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:50:19 Download gff for IP16959.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24665427..24665838 2306..2717 100 <- Minus
2R 24665898..24666811 1392..2305 100 <- Minus
2R 24666869..24667124 1136..1391 100 <- Minus
2R 24667184..24668318 1..1135 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:50:19 Download gff for IP16959.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24665427..24665838 2306..2717 100 <- Minus
2R 24665898..24666811 1392..2305 100 <- Minus
2R 24666869..24667124 1136..1391 100 <- Minus
2R 24667184..24668318 1..1135 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:48:11 Download gff for IP16959.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20552950..20553361 2306..2717 100 <- Minus
arm_2R 20553421..20554334 1392..2305 100 <- Minus
arm_2R 20554392..20554647 1136..1391 100 <- Minus
arm_2R 20554707..20555841 1..1135 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:45:20 Download gff for IP16959.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24666644..24667055 2306..2717 100 <- Minus
2R 24667115..24668028 1392..2305 100 <- Minus
2R 24668086..24668341 1136..1391 100 <- Minus
2R 24668401..24669535 1..1135 100   Minus

IP16959.hyp Sequence

Translation from 2 to 1990

> IP16959.hyp
EFHVQMELKKMKSLKDDAAESQSQPETGVRKRRNPFNTQRLKEEKERRQK
KRARLIVRNISYKSTEDSLREHFGQWGTLEDVHILKRGDGKLVGCAFVQY
ETINQATKAILNSNGKELLGRKVFVDWALGKDEYVSKNPKDEEPDEKKPK
VEVKEENGDEKEVKEESDAEVGKEDESSGEDSDAESGEDEEDSGESEDEE
NDEDHKENKDELKSKLDIKNVKREKQISNDVQEGCTVFIKNVPFDAEDAD
LRKACRKFGLVSYAIINRQAVSGHSKGTAFVKFKAKESADLCLQAGTEFK
LMDEVLDPHPALSREEMKSKQSQENKKDDAKDSRNLYLAREGLIMAGAKA
ADGVSASDMAKRHELEQVKTQVLKNLNRFVSRNRLSIHNLPQNYDNEKLK
QMALTYTGFRPHECRVMREHKVTPEHPQGKSKGFGFLSFDTHQRALAALR
KLNNNPNIFGTQSRPIVAFSIEDRAVHKIKEKRTERSKQNNPTYQNKQQE
RKERRQQKRNGQETKTPVPQADNKSKLQKHIKKLEASRAAKAEGKVAEKK
QLSDVQGDFVGTAAKPGTSLKMRSKKKIVEQAKEHLKKVKTEKRKQKNKK
IRESHLAERKANNRPKQGRKKETDDLRPLINKYKNMISGNQGGGGVTGGK
IKKPKRTKWYTE*

IP16959.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:54:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG4806-PA 657 CG4806-PA 1..657 6..662 3381 100 Plus

IP16959.pep Sequence

Translation from 2246 to 2692

> IP16959.pep
MAPREKVEFVLVRLAFVPYINPLYPRISYQIRKHAPTGSIIQVRDWFEHV
MMRERSKLPPDANIRYAEWRIITGDMELFQVQGVRFDKIMLVLGEENISW
VFYQNTPLFRRIEGSACFPVSYCGCCLNNQYLDIMAKIKQTVSRKKIR*

IP16959.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 18:28:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11914-PA 148 GF11914-PA 1..148 1..148 720 89.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 18:28:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19903-PA 148 GG19903-PA 1..148 1..148 771 97.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:19:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG34214-PA 148 CG34214-PA 1..148 1..148 787 100 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 18:28:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11106-PA 98 GL11106-PA 1..98 51..148 450 81.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 18:28:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24613-PA 98 GA24613-PA 1..98 51..148 450 81.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 18:28:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11804-PA 148 GM11804-PA 1..148 1..148 785 99.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 18:28:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24929-PA 148 GD24929-PA 1..148 1..148 792 100 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 18:28:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21873-PA 148 GK21873-PA 1..142 1..142 530 65.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 18:28:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11428-PA 148 GE11428-PA 1..148 1..148 764 95.9 Plus