Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
IP16959.complete Sequence
2734 bp assembled on 2006-12-23
GenBank Submission: BT029945.1
> IP16959.complete
AAGAGTTCCACGTGCAAATGGAACTTAAAAAAATGAAATCTTTAAAAGAC
GACGCTGCCGAATCCCAATCTCAGCCAGAAACCGGGGTCCGGAAGCGCCG
CAACCCCTTTAACACACAGAGGCTGAAGGAAGAGAAGGAGCGCCGCCAGA
AAAAGCGAGCGCGTCTCATCGTGCGCAACATCAGTTACAAGTCCACGGAG
GACTCGCTTCGCGAGCATTTCGGGCAGTGGGGCACGCTGGAGGATGTACA
CATCCTGAAACGAGGTGACGGGAAGCTGGTGGGCTGCGCCTTTGTCCAGT
ACGAGACCATTAACCAGGCCACCAAAGCGATCCTGAACTCCAACGGCAAA
GAGCTGCTCGGGAGAAAGGTATTTGTGGACTGGGCTTTGGGCAAGGACGA
GTATGTATCAAAGAACCCGAAAGACGAGGAGCCGGATGAGAAGAAGCCAA
AGGTGGAAGTGAAAGAGGAAAACGGTGACGAGAAGGAAGTTAAGGAGGAA
AGCGACGCGGAAGTTGGCAAGGAAGATGAAAGTTCTGGGGAGGATTCTGA
TGCGGAATCCGGCGAAGATGAAGAGGACTCTGGAGAATCTGAAGACGAAG
AGAACGACGAAGATCATAAGGAGAACAAGGACGAATTAAAATCAAAATTG
GATATCAAAAATGTCAAAAGGGAAAAGCAAATCTCCAACGACGTCCAGGA
GGGCTGCACGGTCTTCATTAAAAACGTTCCCTTCGATGCAGAGGATGCCG
ACTTGAGAAAGGCGTGCCGCAAATTCGGCTTGGTCAGCTACGCCATTATT
AATCGCCAGGCGGTTTCTGGCCACTCCAAGGGTACAGCCTTCGTTAAATT
CAAAGCCAAGGAGTCAGCGGATCTTTGTCTGCAAGCTGGAACAGAGTTTA
AGTTGATGGACGAGGTCCTGGATCCTCATCCCGCATTGAGCCGCGAGGAA
ATGAAGTCGAAGCAGTCGCAGGAAAACAAAAAAGACGATGCCAAGGACTC
ACGAAACCTGTATTTGGCCAGGGAAGGTCTAATCATGGCTGGAGCGAAGG
CAGCCGATGGGGTTTCTGCCTCAGACATGGCCAAGCGACATGAACTTGAG
CAGGTTAAGACGCAGGTGCTCAAGAACTTGAATCGGTTTGTTTCCCGGAA
TCGCTTGTCCATTCACAATCTCCCCCAAAACTATGACAATGAAAAGCTGA
AACAAATGGCTCTGACTTATACTGGCTTCCGACCCCACGAATGCCGGGTG
ATGAGGGAACATAAGGTGACCCCTGAGCATCCACAGGGCAAGTCCAAGGG
CTTTGGTTTCCTATCCTTCGACACGCATCAGAGAGCTTTGGCCGCCCTAC
GGAAACTAAACAACAACCCCAATATCTTCGGAACACAGAGTCGCCCCATT
GTCGCGTTCAGTATAGAGGATCGTGCTGTGCACAAAATCAAAGAAAAGCG
CACGGAGCGCTCAAAGCAGAACAATCCCACATACCAAAACAAACAGCAGG
AGCGCAAGGAGCGACGCCAGCAAAAGCGCAATGGTCAGGAGACCAAAACT
CCAGTTCCCCAAGCAGATAATAAAAGCAAACTTCAGAAACACATTAAGAA
ACTTGAAGCTTCGCGAGCAGCGAAAGCCGAAGGTAAAGTCGCGGAGAAAA
AGCAGTTGAGCGATGTTCAGGGCGATTTTGTCGGCACGGCCGCCAAGCCG
GGCACCTCGCTGAAGATGCGATCCAAAAAGAAGATTGTAGAGCAGGCCAA
GGAACACTTGAAGAAGGTGAAAACCGAAAAGCGCAAGCAGAAGAACAAGA
AGATACGCGAGTCCCACCTGGCAGAGCGCAAGGCAAATAATCGGCCCAAG
CAAGGACGCAAGAAGGAAACGGATGACCTTCGGCCCCTAATTAATAAGTA
CAAGAACATGATTAGTGGAAACCAAGGAGGTGGCGGCGTTACGGGAGGTA
AAATCAAGAAGCCTAAGCGTACCAAGTGGTACACGGAGTAGCGCTCCCTC
TTCTAGGATAAGAAAAATCTTTTTAGCAATAAAACTGTAAATGAGAAAAT
CGATACAGGTAACTAACGGGAAAACTGGGACTTTTTCTTGGGATTAGAAA
CGGAACATCTGCTTTAGCAATGATTCTACCTGCCTGCAAGTCGCGTATTA
TGCATATATAGTCTGAGCAGTGGACCAAGTTCATTAGTATTGCATAGCAG
TGCCTGTGAAGTGCGTCGTCCGCATAAAAATAAAATTATCTTCAAGATGG
CTCCTCGAGAGAAAGTTGAATTTGTGCTGGTGCGCCTGGCCTTTGTTCCT
TACATAAATCCTCTGTACCCGCGCATCAGCTACCAGATCAGAAAGCACGC
TCCCACCGGATCGATTATCCAAGTGCGCGATTGGTTCGAGCATGTGATGA
TGAGGGAGCGCTCCAAGCTGCCCCCAGATGCTAACATACGCTACGCAGAG
TGGCGCATCATCACCGGCGACATGGAGCTGTTTCAGGTGCAGGGCGTCCG
CTTCGACAAGATCATGCTGGTGCTGGGCGAAGAAAACATCTCGTGGGTCT
TCTATCAGAACACGCCACTTTTCCGCCGTATCGAGGGCAGCGCCTGCTTC
CCTGTTAGCTACTGCGGATGCTGCCTGAACAACCAGTACCTGGATATTAT
GGCCAAAATCAAGCAAACTGTGTCGAGGAAAAAGATACGATGAAATAAAT
ATATCGAGTACTAATGGAAAAAAAAAAAAAAAAA
IP16959.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 17:09:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4806-RA | 2221 | CG4806-RA | 62..2221 | 1..2160 | 10800 | 100 | Plus |
CG34214-RA | 642 | CG34214-RA | 1..579 | 2142..2720 | 2895 | 100 | Plus |
CG3683.a | 1068 | CG3683.a | 880..1068 | 2720..2532 | 945 | 100 | Minus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:49:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2R | 21145070 | chr2R | 20553074..20554210 | 1137..1 | 5685 | 100 | Minus |
chr2R | 21145070 | chr2R | 20551790..20552703 | 2305..1392 | 4570 | 100 | Minus |
chr2R | 21145070 | chr2R | 20551319..20551730 | 2717..2306 | 2060 | 100 | Minus |
chr2R | 21145070 | chr2R | 20552761..20553017 | 1391..1135 | 1285 | 100 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:29:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:49:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24667182..24668318 | 1137..1 | 5685 | 100 | Minus |
2R | 25286936 | 2R | 24665898..24666811 | 2305..1392 | 4570 | 100 | Minus |
2R | 25286936 | 2R | 24665424..24665838 | 2720..2306 | 2075 | 100 | Minus |
2R | 25286936 | 2R | 24666869..24667125 | 1391..1135 | 1285 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:04:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25260384 | 2R | 24668381..24669517 | 1137..1 | 5685 | 100 | Minus |
2R | 25260384 | 2R | 24667097..24668010 | 2305..1392 | 4570 | 100 | Minus |
2R | 25260384 | 2R | 24666623..24667037 | 2720..2306 | 2075 | 100 | Minus |
2R | 25260384 | 2R | 24668068..24668324 | 1391..1135 | 1285 | 100 | Minus |
Blast to na_te.dros performed 2019-03-16 09:49:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HeT-A | 6083 | HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). | 599..667 | 436..503 | 153 | 71 | Plus |
TAHRE | 10463 | TAHRE OSV 10463bp | 286..354 | 436..503 | 135 | 70 | Plus |
springer | 7546 | springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. | 596..677 | 675..591 | 120 | 63.5 | Minus |
HeT-A | 6083 | HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). | 249..365 | 1484..1604 | 118 | 61.3 | Plus |
IP16959.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:50:19 Download gff for
IP16959.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2R | 20551319..20551730 | 2306..2717 | 100 | <- | Minus |
chr2R | 20551790..20552703 | 1392..2305 | 100 | <- | Minus |
chr2R | 20552761..20553016 | 1136..1391 | 100 | <- | Minus |
chr2R | 20553076..20554210 | 1..1135 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:05:19 Download gff for
IP16959.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4806-RA | 1..1974 | 18..1991 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:14:27 Download gff for
IP16959.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4806-RA | 1..1974 | 18..1991 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:48:11 Download gff for
IP16959.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4806-RA | 1..1974 | 18..1991 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:24:47 Download gff for
IP16959.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4806-RA | 1..1974 | 18..1991 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:46:21 Download gff for
IP16959.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4806-RA | 1..1974 | 18..1991 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:42:57 Download gff for
IP16959.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4806-RA | 13..2063 | 1..2051 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:14:27 Download gff for
IP16959.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4806-RA | 13..2057 | 1..2045 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:48:11 Download gff for
IP16959.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4806-RA | 26..2070 | 1..2045 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:24:47 Download gff for
IP16959.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4806-RA | 13..2063 | 1..2051 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:46:21 Download gff for
IP16959.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4806-RA | 26..2070 | 1..2045 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:50:19 Download gff for
IP16959.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24665427..24665838 | 2306..2717 | 100 | <- | Minus |
2R | 24665898..24666811 | 1392..2305 | 100 | <- | Minus |
2R | 24666869..24667124 | 1136..1391 | 100 | <- | Minus |
2R | 24667184..24668318 | 1..1135 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:50:19 Download gff for
IP16959.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24665427..24665838 | 2306..2717 | 100 | <- | Minus |
2R | 24665898..24666811 | 1392..2305 | 100 | <- | Minus |
2R | 24666869..24667124 | 1136..1391 | 100 | <- | Minus |
2R | 24667184..24668318 | 1..1135 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:50:19 Download gff for
IP16959.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24665427..24665838 | 2306..2717 | 100 | <- | Minus |
2R | 24665898..24666811 | 1392..2305 | 100 | <- | Minus |
2R | 24666869..24667124 | 1136..1391 | 100 | <- | Minus |
2R | 24667184..24668318 | 1..1135 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:48:11 Download gff for
IP16959.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20552950..20553361 | 2306..2717 | 100 | <- | Minus |
arm_2R | 20553421..20554334 | 1392..2305 | 100 | <- | Minus |
arm_2R | 20554392..20554647 | 1136..1391 | 100 | <- | Minus |
arm_2R | 20554707..20555841 | 1..1135 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:45:20 Download gff for
IP16959.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24666644..24667055 | 2306..2717 | 100 | <- | Minus |
2R | 24667115..24668028 | 1392..2305 | 100 | <- | Minus |
2R | 24668086..24668341 | 1136..1391 | 100 | <- | Minus |
2R | 24668401..24669535 | 1..1135 | 100 | | Minus |
IP16959.hyp Sequence
Translation from 2 to 1990
> IP16959.hyp
EFHVQMELKKMKSLKDDAAESQSQPETGVRKRRNPFNTQRLKEEKERRQK
KRARLIVRNISYKSTEDSLREHFGQWGTLEDVHILKRGDGKLVGCAFVQY
ETINQATKAILNSNGKELLGRKVFVDWALGKDEYVSKNPKDEEPDEKKPK
VEVKEENGDEKEVKEESDAEVGKEDESSGEDSDAESGEDEEDSGESEDEE
NDEDHKENKDELKSKLDIKNVKREKQISNDVQEGCTVFIKNVPFDAEDAD
LRKACRKFGLVSYAIINRQAVSGHSKGTAFVKFKAKESADLCLQAGTEFK
LMDEVLDPHPALSREEMKSKQSQENKKDDAKDSRNLYLAREGLIMAGAKA
ADGVSASDMAKRHELEQVKTQVLKNLNRFVSRNRLSIHNLPQNYDNEKLK
QMALTYTGFRPHECRVMREHKVTPEHPQGKSKGFGFLSFDTHQRALAALR
KLNNNPNIFGTQSRPIVAFSIEDRAVHKIKEKRTERSKQNNPTYQNKQQE
RKERRQQKRNGQETKTPVPQADNKSKLQKHIKKLEASRAAKAEGKVAEKK
QLSDVQGDFVGTAAKPGTSLKMRSKKKIVEQAKEHLKKVKTEKRKQKNKK
IRESHLAERKANNRPKQGRKKETDDLRPLINKYKNMISGNQGGGGVTGGK
IKKPKRTKWYTE*
IP16959.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:54:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4806-PA | 657 | CG4806-PA | 1..657 | 6..662 | 3381 | 100 | Plus |
IP16959.pep Sequence
Translation from 2246 to 2692
> IP16959.pep
MAPREKVEFVLVRLAFVPYINPLYPRISYQIRKHAPTGSIIQVRDWFEHV
MMRERSKLPPDANIRYAEWRIITGDMELFQVQGVRFDKIMLVLGEENISW
VFYQNTPLFRRIEGSACFPVSYCGCCLNNQYLDIMAKIKQTVSRKKIR*
IP16959.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 18:28:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF11914-PA | 148 | GF11914-PA | 1..148 | 1..148 | 720 | 89.2 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 18:28:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG19903-PA | 148 | GG19903-PA | 1..148 | 1..148 | 771 | 97.3 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:19:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34214-PA | 148 | CG34214-PA | 1..148 | 1..148 | 787 | 100 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 18:28:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL11106-PA | 98 | GL11106-PA | 1..98 | 51..148 | 450 | 81.6 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 18:28:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA24613-PA | 98 | GA24613-PA | 1..98 | 51..148 | 450 | 81.6 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 18:28:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM11804-PA | 148 | GM11804-PA | 1..148 | 1..148 | 785 | 99.3 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 18:28:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD24929-PA | 148 | GD24929-PA | 1..148 | 1..148 | 792 | 100 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 18:28:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK21873-PA | 148 | GK21873-PA | 1..142 | 1..142 | 530 | 65.5 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 18:28:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE11428-PA | 148 | GE11428-PA | 1..148 | 1..148 | 764 | 95.9 | Plus |