IP17040.complete Sequence
1764 bp assembled on 2006-12-04
GenBank Submission: BT029605.1
> IP17040.complete
TCGGCACGAGCGAACAAAAAAAAAGAAAAGTGAACAATCAGCCGAAAAAC
TGTGGGGCCCAGCCAATGCGTCATTCCCGCAGTCGCTCAATCCGGCAACA
AGAGCTATCGCCACAGACACGAGCATTCGCACTCACATTCGCACTAGCAC
AGTTGCAGCTACAAAGTGCGAACGACAGGCCCAGACATCGCACCCATACA
CCCGGATTGGGGATTATGGAACCGAGATTTTGCTCAAGAGATCGGAACTA
AGGCGCTCGAGAAGTTAGCAGGGCAGTGCGGTACTTGAAACAAGTTTCTA
GAATTTCAACTACTTCAATAGAAAGTACACAGGCCTTGGCCCTTGGATAC
TAAGTATCTTGCTTAAATATGAAACTCCCAACTTATTCGATGACATCTTA
ACATTCAAGTTCTAAAGTTCAAATTCAAAATGTTTCGAATGAATTAAGAG
CAATGCATCCATACAAAGCAATGACACCTTCTGATAAACCGAAATCGGAG
CTAGCAATTCCTGCACCGATTTTCGCCCAGTGTAGATTGGCAGACAGCAG
GCAGACTGAAAGCGCAGTGGGAGGGTCGCCACACAGTTATCAGTCTCAGT
CGCAGTCTCGTTCTCAGCCCCAAACGCAGACTCAGTCTCAGTCTCAGAAA
CTGAAACAGACTTAAAATCAGACTGCGACTGAAGCTGAGACGCCGCTGTC
GGCGTTGTCTGGAATTCGTATTGCCCATATGCGAACTCACACACACACAC
ACTCACTTAGACACCGTGTGCCACACGCCCATTTGCACACATGGCCAACC
GGATGTTGCAGCCATCTTTGTCATCGTTTTCAATCTCAGCCTTGGCTAAG
GTCGCTCCTGCCATCCGATGTCCCATCAACCAGAAAGAGACAGGAGCAGT
AAGCGAGCGAGCGAGAAAGAGCCGGGTGGCTGGCTGGCGTTGCCGTGAAG
TCGTGAATTTATAACAAAACGCTAGACTCGGCGACTCTGACCGACTGGTT
TGGCGTGTTGGCCCGGCTGAAATGTTTTTTTTTTTTTTTATGGCTATAAC
AAGCAAGCAGAGCAGCAACAACTGAATCAAAAGCATAAAAATGCCGCAAC
CCAAAAACCCACTACACAAATTCTGAATGGGCAACATCTGAATATTCGAG
ATGATCGAAAACGATGGTGAGAGGGAGAGGGGTGGAGAACCGGCGATAAG
GAAGTGCGGATGTCTTTGGGCTCCTGCTTGGACTTGGAAGATGGAAATCT
TAATCCAAACGAATGGAAATGGAAGTCGAGAAGCACAGCCCACACGCACA
CAAACACATACACATAGAGAAGGACTTCTTGGGAACCAAGGTACTTCCGG
AATGGATGGCCCGACTCCTGACTCCTCCTGGTCCTGCCAGCTGGATCCTC
CGGTCTGAACCAACTTGACGCCGGGATCTTGGCGCAACTCGAGTCGGACG
CTTCAGATAAGAACTTCGTTCGTCCGTCGAAGAATATTTCCGGATTCAGG
AATCAGGTAAGCAATTGCCCAAAGGATGCCTTCGGATGCCTGAGCAAACA
TTCATTAATATCAATTTGACTCCGACCCGTTCGACTTCTTCTGTTTATGA
CTGCTACAGCAGGGACACAAATAATTTATTTAGTTCATTTTGGTTACTCG
CCTGCGGCAGATGCTCCATCTTTACTTCCAACTTCCAACCATCCACAAAA
CCGTATGCCTCGTTTGATTCATGGCAAATAAACAATAAATGAAATTAAAA
AAAAAAAAAAAAAA
IP17040.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 17:10:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42524-RA | 1736 | CG42524-RA | 1..1736 | 11..1746 | 8680 | 100 | Plus |
CG42524.b | 1969 | CG42524.b | 234..1969 | 11..1746 | 8680 | 100 | Plus |
CG42524.a | 418 | CG42524.a | 1..288 | 1219..1506 | 1440 | 100 | Plus |
CG42524.a | 418 | CG42524.a | 286..418 | 1607..1739 | 665 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:48:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2R | 21145070 | chr2R | 11501286..11502479 | 16..1209 | 5895 | 99.6 | Plus |
chr2R | 21145070 | chr2R | 11537240..11537532 | 1454..1746 | 1465 | 100 | Plus |
chr2R | 21145070 | chr2R | 11524971..11525152 | 1279..1460 | 895 | 99.5 | Plus |
chr2R | 21145070 | chr2R | 11517921..11517992 | 1209..1280 | 360 | 100 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:29:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:47:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15614102..15615300 | 11..1209 | 5995 | 100 | Plus |
2R | 25286936 | 2R | 15650018..15650311 | 1454..1747 | 1470 | 100 | Plus |
2R | 25286936 | 2R | 15637758..15637939 | 1279..1460 | 895 | 99.5 | Plus |
2R | 25286936 | 2R | 15630709..15630780 | 1209..1280 | 360 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:04:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25260384 | 2R | 15615301..15616499 | 11..1209 | 5995 | 100 | Plus |
2R | 25260384 | 2R | 15651217..15651510 | 1454..1747 | 1470 | 100 | Plus |
2R | 25260384 | 2R | 15638957..15639138 | 1279..1460 | 895 | 99.4 | Plus |
2R | 25260384 | 2R | 15631908..15631979 | 1209..1280 | 360 | 100 | Plus |
Blast to na_te.dros performed 2019-03-15 20:47:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 652..714 | 1046..1108 | 117 | 65.1 | Plus |
IP17040.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:48:49 Download gff for
IP17040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2R | 11501277..11502479 | 6..1209 | 99 | -> | Plus |
chr2R | 11517922..11517992 | 1210..1280 | 100 | -> | Plus |
chr2R | 11524973..11525148 | 1281..1456 | 100 | -> | Plus |
chr2R | 11537243..11537532 | 1457..1746 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:14:52 Download gff for
IP17040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42524-RB | 1..258 | 1151..1408 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:21:33 Download gff for
IP17040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42524-RC | 1..258 | 1151..1408 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:29:10 Download gff for
IP17040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42524-RC | 1..258 | 1151..1408 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:14:52 Download gff for
IP17040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42524-RA | 1..1736 | 11..1746 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:21:33 Download gff for
IP17040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42524-RA | 249..1984 | 11..1746 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 15:25:17 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:29:10 Download gff for
IP17040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42524-RA | 249..1984 | 11..1746 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:48:49 Download gff for
IP17040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15614102..15615300 | 11..1209 | 100 | -> | Plus |
2R | 15630710..15630780 | 1210..1280 | 100 | -> | Plus |
2R | 15637760..15637935 | 1281..1456 | 100 | -> | Plus |
2R | 15650021..15650310 | 1457..1746 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:48:49 Download gff for
IP17040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15614102..15615300 | 11..1209 | 100 | -> | Plus |
2R | 15630710..15630780 | 1210..1280 | 100 | -> | Plus |
2R | 15637760..15637935 | 1281..1456 | 100 | -> | Plus |
2R | 15650021..15650310 | 1457..1746 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:48:49 Download gff for
IP17040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15614102..15615300 | 11..1209 | 100 | -> | Plus |
2R | 15630710..15630780 | 1210..1280 | 100 | -> | Plus |
2R | 15637760..15637935 | 1281..1456 | 100 | -> | Plus |
2R | 15650021..15650310 | 1457..1746 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:21:33 Download gff for
IP17040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11537526..11537815 | 1457..1746 | 100 | | Plus |
arm_2R | 11501607..11502805 | 11..1209 | 100 | -> | Plus |
arm_2R | 11518215..11518285 | 1210..1280 | 100 | -> | Plus |
arm_2R | 11525265..11525440 | 1281..1456 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:45:39 Download gff for
IP17040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15615301..15616499 | 11..1209 | 100 | -> | Plus |
2R | 15631909..15631979 | 1210..1280 | 100 | -> | Plus |
2R | 15638959..15639134 | 1281..1456 | 100 | -> | Plus |
2R | 15651220..15651509 | 1457..1746 | 100 | | Plus |
IP17040.hyp Sequence
Translation from 11 to 267
> IP17040.hyp
RTKKKKSEQSAEKLWGPANASFPQSLNPATRAIATDTSIRTHIRTSTVAA
TKCERQAQTSHPYTRIGDYGTEILLKRSELRRSRS*
Sequence IP17040.hyp has no blast hits.
IP17040.pep Sequence
Translation from 1150 to 1407
> IP17040.pep
MIENDGERERGGEPAIRKCGCLWAPAWTWKMEILIQTNGNGSREAQPTRT
QTHTHREGLLGNQGTSGMDGPTPDSSWSCQLDPPV*
IP17040.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:26:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42524-PB | 85 | CG42524-PB | 1..85 | 1..85 | 481 | 100 | Plus |
CG42524-PA | 85 | CG42524-PA | 1..85 | 1..85 | 481 | 100 | Plus |
CG42524-PC | 85 | CG42524-PC | 1..85 | 1..85 | 481 | 100 | Plus |