Clone IP17040 Report

Search the DGRC for IP17040

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:170
Well:40
Vector:pOT2
Associated Gene/TranscriptCG42524-RA
Protein status:IP17040.pep: gold
Sequenced Size:1764

Clone Sequence Records

IP17040.complete Sequence

1764 bp assembled on 2006-12-04

GenBank Submission: BT029605.1

> IP17040.complete
TCGGCACGAGCGAACAAAAAAAAAGAAAAGTGAACAATCAGCCGAAAAAC
TGTGGGGCCCAGCCAATGCGTCATTCCCGCAGTCGCTCAATCCGGCAACA
AGAGCTATCGCCACAGACACGAGCATTCGCACTCACATTCGCACTAGCAC
AGTTGCAGCTACAAAGTGCGAACGACAGGCCCAGACATCGCACCCATACA
CCCGGATTGGGGATTATGGAACCGAGATTTTGCTCAAGAGATCGGAACTA
AGGCGCTCGAGAAGTTAGCAGGGCAGTGCGGTACTTGAAACAAGTTTCTA
GAATTTCAACTACTTCAATAGAAAGTACACAGGCCTTGGCCCTTGGATAC
TAAGTATCTTGCTTAAATATGAAACTCCCAACTTATTCGATGACATCTTA
ACATTCAAGTTCTAAAGTTCAAATTCAAAATGTTTCGAATGAATTAAGAG
CAATGCATCCATACAAAGCAATGACACCTTCTGATAAACCGAAATCGGAG
CTAGCAATTCCTGCACCGATTTTCGCCCAGTGTAGATTGGCAGACAGCAG
GCAGACTGAAAGCGCAGTGGGAGGGTCGCCACACAGTTATCAGTCTCAGT
CGCAGTCTCGTTCTCAGCCCCAAACGCAGACTCAGTCTCAGTCTCAGAAA
CTGAAACAGACTTAAAATCAGACTGCGACTGAAGCTGAGACGCCGCTGTC
GGCGTTGTCTGGAATTCGTATTGCCCATATGCGAACTCACACACACACAC
ACTCACTTAGACACCGTGTGCCACACGCCCATTTGCACACATGGCCAACC
GGATGTTGCAGCCATCTTTGTCATCGTTTTCAATCTCAGCCTTGGCTAAG
GTCGCTCCTGCCATCCGATGTCCCATCAACCAGAAAGAGACAGGAGCAGT
AAGCGAGCGAGCGAGAAAGAGCCGGGTGGCTGGCTGGCGTTGCCGTGAAG
TCGTGAATTTATAACAAAACGCTAGACTCGGCGACTCTGACCGACTGGTT
TGGCGTGTTGGCCCGGCTGAAATGTTTTTTTTTTTTTTTATGGCTATAAC
AAGCAAGCAGAGCAGCAACAACTGAATCAAAAGCATAAAAATGCCGCAAC
CCAAAAACCCACTACACAAATTCTGAATGGGCAACATCTGAATATTCGAG
ATGATCGAAAACGATGGTGAGAGGGAGAGGGGTGGAGAACCGGCGATAAG
GAAGTGCGGATGTCTTTGGGCTCCTGCTTGGACTTGGAAGATGGAAATCT
TAATCCAAACGAATGGAAATGGAAGTCGAGAAGCACAGCCCACACGCACA
CAAACACATACACATAGAGAAGGACTTCTTGGGAACCAAGGTACTTCCGG
AATGGATGGCCCGACTCCTGACTCCTCCTGGTCCTGCCAGCTGGATCCTC
CGGTCTGAACCAACTTGACGCCGGGATCTTGGCGCAACTCGAGTCGGACG
CTTCAGATAAGAACTTCGTTCGTCCGTCGAAGAATATTTCCGGATTCAGG
AATCAGGTAAGCAATTGCCCAAAGGATGCCTTCGGATGCCTGAGCAAACA
TTCATTAATATCAATTTGACTCCGACCCGTTCGACTTCTTCTGTTTATGA
CTGCTACAGCAGGGACACAAATAATTTATTTAGTTCATTTTGGTTACTCG
CCTGCGGCAGATGCTCCATCTTTACTTCCAACTTCCAACCATCCACAAAA
CCGTATGCCTCGTTTGATTCATGGCAAATAAACAATAAATGAAATTAAAA
AAAAAAAAAAAAAA

IP17040.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:10:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG42524-RA 1736 CG42524-RA 1..1736 11..1746 8680 100 Plus
CG42524.b 1969 CG42524.b 234..1969 11..1746 8680 100 Plus
CG42524.a 418 CG42524.a 1..288 1219..1506 1440 100 Plus
CG42524.a 418 CG42524.a 286..418 1607..1739 665 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:48:00
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 11501286..11502479 16..1209 5895 99.6 Plus
chr2R 21145070 chr2R 11537240..11537532 1454..1746 1465 100 Plus
chr2R 21145070 chr2R 11524971..11525152 1279..1460 895 99.5 Plus
chr2R 21145070 chr2R 11517921..11517992 1209..1280 360 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:29:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:47:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15614102..15615300 11..1209 5995 100 Plus
2R 25286936 2R 15650018..15650311 1454..1747 1470 100 Plus
2R 25286936 2R 15637758..15637939 1279..1460 895 99.5 Plus
2R 25286936 2R 15630709..15630780 1209..1280 360 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:04:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 15615301..15616499 11..1209 5995 100 Plus
2R 25260384 2R 15651217..15651510 1454..1747 1470 100 Plus
2R 25260384 2R 15638957..15639138 1279..1460 895 99.4 Plus
2R 25260384 2R 15631908..15631979 1209..1280 360 100 Plus
Blast to na_te.dros performed 2019-03-15 20:47:59
Subject Length Description Subject Range Query Range Score Percent Strand
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 652..714 1046..1108 117 65.1 Plus

IP17040.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:48:49 Download gff for IP17040.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 11501277..11502479 6..1209 99 -> Plus
chr2R 11517922..11517992 1210..1280 100 -> Plus
chr2R 11524973..11525148 1281..1456 100 -> Plus
chr2R 11537243..11537532 1457..1746 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:14:52 Download gff for IP17040.complete
Subject Subject Range Query Range Percent Splice Strand
CG42524-RB 1..258 1151..1408 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:21:33 Download gff for IP17040.complete
Subject Subject Range Query Range Percent Splice Strand
CG42524-RC 1..258 1151..1408 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:29:10 Download gff for IP17040.complete
Subject Subject Range Query Range Percent Splice Strand
CG42524-RC 1..258 1151..1408 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:14:52 Download gff for IP17040.complete
Subject Subject Range Query Range Percent Splice Strand
CG42524-RA 1..1736 11..1746 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:21:33 Download gff for IP17040.complete
Subject Subject Range Query Range Percent Splice Strand
CG42524-RA 249..1984 11..1746 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 15:25:17 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:29:10 Download gff for IP17040.complete
Subject Subject Range Query Range Percent Splice Strand
CG42524-RA 249..1984 11..1746 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:48:49 Download gff for IP17040.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15614102..15615300 11..1209 100 -> Plus
2R 15630710..15630780 1210..1280 100 -> Plus
2R 15637760..15637935 1281..1456 100 -> Plus
2R 15650021..15650310 1457..1746 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:48:49 Download gff for IP17040.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15614102..15615300 11..1209 100 -> Plus
2R 15630710..15630780 1210..1280 100 -> Plus
2R 15637760..15637935 1281..1456 100 -> Plus
2R 15650021..15650310 1457..1746 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:48:49 Download gff for IP17040.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15614102..15615300 11..1209 100 -> Plus
2R 15630710..15630780 1210..1280 100 -> Plus
2R 15637760..15637935 1281..1456 100 -> Plus
2R 15650021..15650310 1457..1746 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:21:33 Download gff for IP17040.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11537526..11537815 1457..1746 100   Plus
arm_2R 11501607..11502805 11..1209 100 -> Plus
arm_2R 11518215..11518285 1210..1280 100 -> Plus
arm_2R 11525265..11525440 1281..1456 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:45:39 Download gff for IP17040.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15615301..15616499 11..1209 100 -> Plus
2R 15631909..15631979 1210..1280 100 -> Plus
2R 15638959..15639134 1281..1456 100 -> Plus
2R 15651220..15651509 1457..1746 100   Plus

IP17040.hyp Sequence

Translation from 11 to 267

> IP17040.hyp
RTKKKKSEQSAEKLWGPANASFPQSLNPATRAIATDTSIRTHIRTSTVAA
TKCERQAQTSHPYTRIGDYGTEILLKRSELRRSRS*
Sequence IP17040.hyp has no blast hits.

IP17040.pep Sequence

Translation from 1150 to 1407

> IP17040.pep
MIENDGERERGGEPAIRKCGCLWAPAWTWKMEILIQTNGNGSREAQPTRT
QTHTHREGLLGNQGTSGMDGPTPDSSWSCQLDPPV*

IP17040.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:26:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG42524-PB 85 CG42524-PB 1..85 1..85 481 100 Plus
CG42524-PA 85 CG42524-PA 1..85 1..85 481 100 Plus
CG42524-PC 85 CG42524-PC 1..85 1..85 481 100 Plus