IP17178.complete Sequence
577 bp assembled on 2006-11-28
GenBank Submission: BT029639
> IP17178.complete
CAAATTTTCAGCTTGCTGATCAATTAAACGGGATGCGTCATACCCAGAAG
GTGCTGACAAGGCTGTGCCGTTTATCCGCCGGAGGACTTAGACAGAAATG
CCGATCCTTCAACCAACAAAACTTTAAGCCCAGCATAGCCGACGAGGCTA
ACAAGCGCCCAACGCACTTTCAGTCCATGCGCGAATTCTTTATGCATCCG
CTGACCTGGGACCGCAATAACGGCTATTTCAATGTGGTTCTGGCTTTGTC
CATTTTCGGATTCTGCTTCTTCAATTCCTGCGCCCCGTGTGAACAGAAGA
GGGGTGGCCTTGAGGAGCGAACCAACCGCCCGCAGTGAAACCGGTGGGCT
ATCCTCGAATCTTCTCAAACTCACCCTGATTGCAGACGCAGACGAGCCCG
GAATTGGTCGAACGGCACTGAGCATTCATGTCGCACAAGGTCGGGTTGTT
CAGACAGTTCTGCTCCTCGATGCACACGTATCCATCTCCCTTGAAACCAG
CGATGCACTGGCACTCGTAATTGGCCGGATCCCTATAAATATATCAGCAG
AAATGTATTAAAAAAAAAAAAAAAAAA
IP17178.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 17:11:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34222-RA | 609 | CG34222-RA | 51..609 | 1..559 | 2795 | 100 | Plus |
Ndg-RB | 4886 | Ndg-RB | 3392..3550 | 532..374 | 795 | 100 | Minus |
Ndg-RA | 4997 | Ndg-RA | 3466..3624 | 532..374 | 795 | 100 | Minus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:20:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2R | 21145070 | chr2R | 6207322..6207851 | 559..30 | 2620 | 99.6 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:30:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:20:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10319842..10320373 | 561..30 | 2660 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:05:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25260384 | 2R | 10321041..10321572 | 561..30 | 2660 | 100 | Minus |
2R | 25260384 | 2R | 10321644..10321674 | 31..1 | 155 | 100 | Minus |
Blast to na_te.dros performed on 2019-03-16 15:20:37 has no hits.
IP17178.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:21:25 Download gff for
IP17178.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2R | 6207322..6207850 | 31..559 | 99 | <- | Minus |
chr2R | 6207924..6207953 | 1..30 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:06:27 Download gff for
IP17178.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34222-RA | 1..306 | 33..338 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:17:44 Download gff for
IP17178.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34222-RA | 1..306 | 33..338 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:08:37 Download gff for
IP17178.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34222-RA | 1..306 | 33..338 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:28:49 Download gff for
IP17178.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34222-RA | 1..306 | 33..338 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:40:11 Download gff for
IP17178.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34222-RA | 1..306 | 33..338 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:46:11 Download gff for
IP17178.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34222-RA | 26..584 | 1..559 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:17:44 Download gff for
IP17178.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34222-RA | 26..584 | 1..559 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:08:37 Download gff for
IP17178.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34222-RA | 26..584 | 1..559 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:28:50 Download gff for
IP17178.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34222-RA | 26..584 | 1..559 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:40:11 Download gff for
IP17178.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34222-RA | 26..584 | 1..559 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:21:25 Download gff for
IP17178.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10319844..10320372 | 31..559 | 100 | <- | Minus |
2R | 10320446..10320475 | 1..30 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:21:25 Download gff for
IP17178.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10319844..10320372 | 31..559 | 100 | <- | Minus |
2R | 10320446..10320475 | 1..30 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:21:25 Download gff for
IP17178.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10319844..10320372 | 31..559 | 100 | <- | Minus |
2R | 10320446..10320475 | 1..30 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:08:37 Download gff for
IP17178.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6207349..6207877 | 31..559 | 100 | <- | Minus |
arm_2R | 6207951..6207980 | 1..30 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:47:41 Download gff for
IP17178.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10321043..10321571 | 31..559 | 100 | <- | Minus |
2R | 10321645..10321674 | 1..30 | 100 | | Minus |
IP17178.hyp Sequence
Translation from 2 to 337
> IP17178.hyp
NFQLADQLNGMRHTQKVLTRLCRLSAGGLRQKCRSFNQQNFKPSIADEAN
KRPTHFQSMREFFMHPLTWDRNNGYFNVVLALSIFGFCFFNSCAPCEQKR
GGLEERTNRPQ*
IP17178.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:34:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34222-PA | 101 | CG34222-PA | 1..101 | 11..111 | 554 | 100 | Plus |
IP17178.pep Sequence
Translation from 2 to 337
> IP17178.pep
NFQLADQLNGMRHTQKVLTRLCRLSAGGLRQKCRSFNQQNFKPSIADEAN
KRPTHFQSMREFFMHPLTWDRNNGYFNVVLALSIFGFCFFNSCAPCEQKR
GGLEERTNRPQ*
IP17178.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:56:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34222-PA | 101 | CG34222-PA | 1..101 | 11..111 | 554 | 100 | Plus |
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:08:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmoj\GI20205-PA | 112 | GI20205-PA | 48..102 | 46..100 | 216 | 65.5 | Plus |