Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
IP17254.complete Sequence
926 bp assembled on 2006-11-28
GenBank Submission: BT029658
> IP17254.complete
AATAACACGTATAAGCATATTTTTACTATTAATTTGTATCTTATTAGTCA
AGCGCATCATTCTCACGATTTATTTACACCCTGTTACAAAATGTAAGAAC
AATGGCAAAATTTAAGCAAATAAACAAACAAAAAAAACGTTTTTTTCATT
TACCAAATCTCGGCGTTGTTGCACTTAGTATTTGAACTCCAACAGAGCCA
CCTTATCGTATCGGTATTGAGATAGACAATCAAATCAAGTATTGGAGATA
CCCACAAGTATCTTATTTGGCAAAGCCACGCCCACGCCGCCGCAAGCGTT
TCAACAAAGCCACGCACGAGCACACATCCTCTACTGCCCCATTGGATGCA
TTGGTAATCGAAACATAAATAAATTTGATCAAGCAAATTGTAAGTCGCCA
TCTCCTCAATCGAGCTATGACAACTATTTTGCATCACTCCTGCTCCTCCA
GCGAGTCCGAGCCGATTGTCTCTAAACACCTCTCTTTCGATTCCCGCAGT
ATTGGAAGGCACCGCGCATCCAGCGGGCCACCACACTCACCTCGTCCATG
TCCCTGCCGGCGGAGTGCCTGGTTCTCTCCGTATCCATGCCCTCGCTCAA
CTCGGAGCCCAAGCGTCCCAAGAGCGCGGGACCCAAGAAGAAGCCCGGCC
AGGCCGTCCACTCGAAGCCATTCCGCCTATATTGAGCCTGTCGAGGAAGG
AGCTGCTCCACAAGTCGCACGTGACGTCACCCAATCGAAGCACTCAGAGA
TTTGTGCACAAGTTGATATCGAGGCACGCACTTCTAAAACATGCATATGC
AGAATACATTTTATCAAACCGTTGATTGTTTAGAACCGAAATGGAAACGA
AACTTGGCATTTACAACATAACAATAAACGACTAAATGAGAGGCAAAGTT
AAGCACAAAAAAAAAAAAAAAAAAAA
IP17254.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 20:39:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34294-RA | 911 | CG34294-RA | 2..911 | 1..910 | 4550 | 100 | Plus |
tau-RA | 2392 | tau-RA | 2257..2392 | 1..136 | 680 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-17 00:03:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 23462799..23463704 | 906..1 | 4485 | 99.7 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:30:53 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 00:03:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27639886..27640795 | 910..1 | 4550 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:00:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 27380717..27381626 | 910..1 | 4550 | 100 | Minus |
Blast to na_te.dros performed 2019-03-17 00:03:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdg3 | 5519 | mdg3 DMMDG3 5519bp Derived from X95908 (e990667) (Rel. 49, Last updated, Version 3). | 1007..1079 | 415..340 | 138 | 68.4 | Minus |
IP17254.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 00:04:30 Download gff for
IP17254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 23462799..23463704 | 1..906 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:06:53 Download gff for
IP17254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34294-RA | 1..417 | 417..833 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:31:40 Download gff for
IP17254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34294-RA | 1..417 | 417..833 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:28:37 Download gff for
IP17254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34294-RA | 1..417 | 417..833 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:05:23 Download gff for
IP17254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34294-RA | 1..417 | 417..833 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:08:29 Download gff for
IP17254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tau-RF | 1024..1212 | 497..685 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:33:01 Download gff for
IP17254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34294-RA | 2..907 | 1..906 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:31:40 Download gff for
IP17254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34294-RA | 2..907 | 1..906 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:28:37 Download gff for
IP17254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34294-RA | 1..906 | 1..906 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:05:24 Download gff for
IP17254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34294-RA | 2..907 | 1..906 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:08:29 Download gff for
IP17254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tau-RF | 1389..1798 | 497..906 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:04:30 Download gff for
IP17254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27639890..27640795 | 1..906 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:04:30 Download gff for
IP17254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27639890..27640795 | 1..906 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:04:30 Download gff for
IP17254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27639890..27640795 | 1..906 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:28:37 Download gff for
IP17254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23465612..23466517 | 1..906 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:43:32 Download gff for
IP17254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27380721..27381626 | 1..906 | 100 | | Minus |
IP17254.hyp Sequence
Translation from 416 to 832
> IP17254.hyp
MTTILHHSCSSSESEPIVSKHLSFDSRSIGRHRASSGPPHSPRPCPCRRS
AWFSPYPCPRSTRSPSVPRARDPRRSPARPSTRSHSAYIEPVEEGAAPQV
ARDVTQSKHSEICAQVDIEARTSKTCICRIHFIKPLIV*
Sequence IP17254.hyp has no blast hits.
IP17254.pep Sequence
Translation from 416 to 832
> IP17254.pep
MTTILHHSCSSSESEPIVSKHLSFDSRSIGRHRASSGPPHSPRPCPCRRS
AWFSPYPCPRSTRSPSVPRARDPRRSPARPSTRSHSAYIEPVEEGAAPQV
ARDVTQSKHSEICAQVDIEARTSKTCICRIHFIKPLIV*
Sequence IP17254.pep has no blast hits.