IP17336.complete Sequence
2018 bp assembled on 2006-12-04
GenBank Submission: BT029674
> IP17336.complete
AATAGATCGAATGCAAAACTTTCCACTCGCCTGTGAGAAACTCTTTGCTT
TTTGCTTTCCCGATCGCCAACTGCACTTCAATTGCCGTCAATTAATTGTT
GCCATCTGACTGCACTTGGCACCCATCGATTCCACTCACAGCATTGAATT
GAGGATCTGATTGAGGATTTACGGAGCAGCCGGAATGGAGTGTTTAGTCA
ATGGAATCGGTAGTATCCAATAGATATACGGCCAATCACCGTTTGCACTT
GCACTTCGAAAATTTCGCGGATGCGTTTTCTGATTTCTGGGTTCCGTTCC
TGAGCGAGCGCCGATGTGCGACTGTTCAATGCTCGTCAGGTACTCGAAAT
ATCGGCCATGACTTTGCCAAAGAAAAACTAAAGCAAGTACGGGGATTGTT
GAGCTAACTCGACTGTAAGATACCCTACGACAAGGGTGAGCTGCCTAATG
CTGTCTTCCTGGTTTTACAGGGTGCATCCCCTATGCATTTCGGTTTATAG
GGATGCTGAACTGTGAGGGAACTTTCCAGCAGTTGGATTTCAAAGATATC
AACCCTCTTAAGGCAAACAAATTACGCATTTTTCTTTCTTTCGAATGCAG
ATGGTTTGTTACAACCTCAAAATGCGTTTCTATACGATGCGTAACAGCGC
AATAACCTGATAACAGCATCCATTTCGATCTGTGTGAGATTTTCAGTAAG
GAGCTTTTCAATGTTAATGAACTTGGCATTAGGCTCTTGAATGGAGGCAG
CATCCATGTCCTGGTCAACTGGCGTCTGGAGCACCGAACTGCTGCGCTTG
GCACGCTCTGAAACGTAAGTTCAACGCTCATGTCCGGAATGCACCAACGC
ACCAAAATCATCACCAGGGCAACAAAGTTCTGAAAACAAAATGCAAGCCA
TCAACTAATTTATGCAAAATATTTCATCATCACACGCCCCTGAATTACAA
TATTTAGTCTGCGACGTTGCTGGCGAATTTGGGGTCAAATGAAGCCTACC
AAATGACAACTTTCCAGGCAAGTAAATGGAATTGGCTAAATGCAGCTTAG
ACAGGTGCTAGCCTCAACCCTAATATAATGTGTATTGGGGGCGATATCGT
CGAGTTCTATTCGAAAAAGAAACCCCTTAGAAACCAAAACCGGCACAGCA
GCACACCGCTCAACAAACATGCAACACATGCAACATACTTGACTCGATGG
ACTTTGGATTCTTGCAGCATAAGAAAGACAGAAAGCCGGGAAAGAATGAA
AGGAATACCAAGCAATCTGAAGAATAAAAAAACGGTCGAAATATTGTACA
AAGTTAATTAGGCCGTGTTCAAGATGAAATACTTCGAATTCCTAAGCCTT
TCGTCGGTGGGCCTCTGCATAGCCTGTGGGGACTTGCTATTAGCAGTGAG
CATACTGGGTCCTTCGAGCTTTTACCTATACCTCGATTTCATGGATATTG
AAAAATGGGAACAGGATGCCGAAGTGGAAGCTTTGACTCCCATTGGAACC
TTCTTTTCAACATTGGTGAACTATCTGTGGGTGCGAGAGTTCTCGCAGGT
TTTCTATATGACAGCAACGTTTATAATTTGGGTGAAGGCAATGATAAACC
TAATGGTGGCCTGTATTCTTATCGACGGCATAAAGCAGAAACGTCTCGTA
TGTATTGCTCCCTGGTTGATAAACTCATGCCTATCAATGGTTGTTGAAAC
GGGCATTTTTGTGAGCCTGGAGCTGCGAATTGATGAAGTTGATGCCGCAG
TGGATCGTCGAATAGCGAGAAGCCTAATCTTTGGCGTATTTATAGTGCTG
AACGCGTTATTTTCGTATGGTATCTTTGCTCTTTATCGCAAGCTAAAGTC
TGACCCCAGTGAGAATGTTGAAGTCATTCCCCAAAGCCCGCCACACACAT
TTAATGCCTGAACATACTTAGAATTTACGTTTTGGAACCGACAAATATAA
ATGTTTGAAAAATAATACAAATAAATCTATCCCTAAGTTTTACTCACTTC
AAAAAAAAAAAAAAAAAA
IP17336.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 17:10:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34138-RA | 2000 | CG34138-RA | 1..2000 | 1..2000 | 9985 | 99.9 | Plus |
CG6231-RD | 2880 | CG6231-RD | 1..311 | 341..31 | 1555 | 100 | Minus |
CG16718-RB | 3581 | CG16718-RB | 2810..2958 | 808..660 | 730 | 99.3 | Minus |
CG16718-RB | 3581 | CG16718-RB | 2672..2733 | 879..818 | 310 | 100 | Minus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:05:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 15458125..15458560 | 818..1253 | 2180 | 100 | Plus |
chr3R | 27901430 | chr3R | 15451254..15451693 | 1..440 | 2170 | 99.5 | Plus |
chr3R | 27901430 | chr3R | 15458783..15459048 | 1251..1516 | 1315 | 99.6 | Plus |
chr3R | 27901430 | chr3R | 15452077..15452304 | 439..666 | 1140 | 100 | Plus |
chr3R | 27901430 | chr3R | 15459509..15459715 | 1794..2000 | 1035 | 100 | Plus |
chr3R | 27901430 | chr3R | 15459292..15459450 | 1637..1795 | 795 | 100 | Plus |
chr3R | 27901430 | chr3R | 15457841..15458000 | 660..819 | 785 | 99.4 | Plus |
chr3R | 27901430 | chr3R | 15459103..15459225 | 1516..1638 | 615 | 100 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:31:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:05:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19627414..19627853 | 1..440 | 2200 | 100 | Plus |
3R | 32079331 | 3R | 19634289..19634724 | 818..1253 | 2180 | 100 | Plus |
3R | 32079331 | 3R | 19634947..19635212 | 1251..1516 | 1315 | 99.6 | Plus |
3R | 32079331 | 3R | 19628237..19628464 | 439..666 | 1140 | 100 | Plus |
3R | 32079331 | 3R | 19635673..19635882 | 1794..2003 | 1050 | 100 | Plus |
3R | 32079331 | 3R | 19635456..19635614 | 1637..1795 | 795 | 100 | Plus |
3R | 32079331 | 3R | 19634005..19634164 | 660..819 | 785 | 99.4 | Plus |
3R | 32079331 | 3R | 19635267..19635389 | 1516..1638 | 615 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:04:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 19368245..19368684 | 1..440 | 2200 | 100 | Plus |
3R | 31820162 | 3R | 19375120..19375555 | 818..1253 | 2180 | 100 | Plus |
3R | 31820162 | 3R | 19375778..19376043 | 1251..1516 | 1315 | 99.6 | Plus |
3R | 31820162 | 3R | 19369068..19369295 | 439..666 | 1140 | 100 | Plus |
3R | 31820162 | 3R | 19376504..19376713 | 1794..2003 | 1050 | 100 | Plus |
3R | 31820162 | 3R | 19376287..19376445 | 1637..1795 | 795 | 100 | Plus |
3R | 31820162 | 3R | 19374836..19374995 | 660..819 | 785 | 99.3 | Plus |
3R | 31820162 | 3R | 19376098..19376220 | 1516..1638 | 615 | 100 | Plus |
Blast to na_te.dros performed on 2019-03-16 21:05:55 has no hits.
IP17336.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:07:02 Download gff for
IP17336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 15458785..15459048 | 1253..1516 | 99 | -> | Plus |
chr3R | 15459104..15459225 | 1517..1638 | 100 | -> | Plus |
chr3R | 15459294..15459450 | 1639..1795 | 100 | -> | Plus |
chr3R | 15459511..15459715 | 1796..2000 | 100 | | Plus |
chr3R | 15451254..15451693 | 1..440 | 99 | -> | Plus |
chr3R | 15452079..15452304 | 441..666 | 100 | -> | Plus |
chr3R | 15457848..15458000 | 667..819 | 100 | -> | Plus |
chr3R | 15458127..15458559 | 820..1252 | 100 | -> | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:07:13 Download gff for
IP17336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34138-RA | 1..588 | 1324..1911 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:15:01 Download gff for
IP17336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34138-RA | 1..588 | 1324..1911 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:45:25 Download gff for
IP17336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34138-RA | 1..588 | 1324..1911 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:25:27 Download gff for
IP17336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34138-RA | 1..588 | 1324..1911 | 99 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:04:06 Download gff for
IP17336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34138-RA | 1..588 | 1324..1911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:43:30 Download gff for
IP17336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34138-RA | 1..2000 | 1..2000 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:15:01 Download gff for
IP17336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34138-RA | 1..748 | 1253..2000 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:25 Download gff for
IP17336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34138-RA | 1..748 | 1253..2000 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:25:27 Download gff for
IP17336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34138-RA | 1..2000 | 1..2000 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:06 Download gff for
IP17336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34138-RA | 1..748 | 1253..2000 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:07:02 Download gff for
IP17336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19627414..19627853 | 1..440 | 100 | -> | Plus |
3R | 19628239..19628464 | 441..666 | 100 | -> | Plus |
3R | 19634012..19634164 | 667..819 | 100 | -> | Plus |
3R | 19634291..19634723 | 820..1252 | 100 | -> | Plus |
3R | 19634949..19635212 | 1253..1516 | 99 | -> | Plus |
3R | 19635268..19635389 | 1517..1638 | 100 | -> | Plus |
3R | 19635458..19635614 | 1639..1795 | 100 | -> | Plus |
3R | 19635675..19635879 | 1796..2000 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:07:02 Download gff for
IP17336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19627414..19627853 | 1..440 | 100 | -> | Plus |
3R | 19628239..19628464 | 441..666 | 100 | -> | Plus |
3R | 19634012..19634164 | 667..819 | 100 | -> | Plus |
3R | 19634291..19634723 | 820..1252 | 100 | -> | Plus |
3R | 19634949..19635212 | 1253..1516 | 99 | -> | Plus |
3R | 19635268..19635389 | 1517..1638 | 100 | -> | Plus |
3R | 19635458..19635614 | 1639..1795 | 100 | -> | Plus |
3R | 19635675..19635879 | 1796..2000 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:07:02 Download gff for
IP17336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19627414..19627853 | 1..440 | 100 | -> | Plus |
3R | 19628239..19628464 | 441..666 | 100 | -> | Plus |
3R | 19634012..19634164 | 667..819 | 100 | -> | Plus |
3R | 19634291..19634723 | 820..1252 | 100 | -> | Plus |
3R | 19634949..19635212 | 1253..1516 | 99 | -> | Plus |
3R | 19635268..19635389 | 1517..1638 | 100 | -> | Plus |
3R | 19635458..19635614 | 1639..1795 | 100 | -> | Plus |
3R | 19635675..19635879 | 1796..2000 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:25 Download gff for
IP17336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15453136..15453575 | 1..440 | 100 | -> | Plus |
arm_3R | 15453961..15454186 | 441..666 | 100 | -> | Plus |
arm_3R | 15459734..15459886 | 667..819 | 100 | -> | Plus |
arm_3R | 15460013..15460445 | 820..1252 | 100 | -> | Plus |
arm_3R | 15460671..15460934 | 1253..1516 | 99 | -> | Plus |
arm_3R | 15460990..15461111 | 1517..1638 | 100 | -> | Plus |
arm_3R | 15461180..15461336 | 1639..1795 | 100 | -> | Plus |
arm_3R | 15461397..15461601 | 1796..2000 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:45:46 Download gff for
IP17336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19376506..19376710 | 1796..2000 | 100 | | Plus |
3R | 19368245..19368684 | 1..440 | 100 | -> | Plus |
3R | 19369070..19369295 | 441..666 | 100 | -> | Plus |
3R | 19374843..19374995 | 667..819 | 100 | -> | Plus |
3R | 19375122..19375554 | 820..1252 | 100 | -> | Plus |
3R | 19375780..19376043 | 1253..1516 | 99 | -> | Plus |
3R | 19376099..19376220 | 1517..1638 | 100 | -> | Plus |
3R | 19376289..19376445 | 1639..1795 | 100 | -> | Plus |
IP17336.pep Sequence
Translation from 1323 to 1910
> IP17336.pep
MKYFEFLSLSSVGLCIACGDLLLAVSILGPSSFYLYLDFMDIEKWEQDAE
VEALTPIGTFFSTLVNYLWVREFSQVFYMTATFIIWVKAMINLMVACILI
DGIKQKRLVCIAPWLINSCLSMVVETGIFVSLELRIDEVDAAVDRRIARS
LIFGVFIVLNALFSYGIFALYRKLKSDPSENVEVIPQSPPHTFNA*
IP17336.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:09:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34138-PA | 195 | CG34138-PA | 1..195 | 1..195 | 997 | 100 | Plus |
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:52:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmoj\GI22972-PA | 199 | GI22972-PA | 1..180 | 1..181 | 604 | 63 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:52:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL12663-PA | 194 | GL12663-PA | 1..194 | 1..195 | 825 | 79 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:52:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA30257-PA | 194 | GA30257-PA | 1..194 | 1..195 | 827 | 79.5 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:52:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ22732-PA | 199 | GJ22732-PA | 1..180 | 1..181 | 614 | 63 | Plus |
IP17336.hyp Sequence
Translation from 1323 to 1910
> IP17336.hyp
MKYFEFLSLSSVGLCIACGDLLLAVSILGPSSFYLYLDFMDIEKWEQDAE
VEALTPIGTFFSTLVNYLWVREFSQVFYMTATFIIWVKAMINLMVACILI
DGIKQKRLVCIAPWLINSCLSMVVETGIFVSLELRIDEVDAAVDRRIARS
LIFGVFIVLNALFSYGIFALYRKLKSDPSENVEVIPQSPPHTFNA*
IP17336.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:38:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34138-PA | 195 | CG34138-PA | 1..195 | 1..195 | 997 | 100 | Plus |