Clone IP17336 Report

Search the DGRC for IP17336

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:173
Well:36
Vector:pOT2
Associated Gene/TranscriptCG34138-RA
Protein status:IP17336.pep: gold
Sequenced Size:2018

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG34138 2008-04-29 Release 5.5 accounting
CG34138 2008-08-15 Release 5.9 accounting
CG34138 2008-12-18 5.12 accounting

Clone Sequence Records

IP17336.complete Sequence

2018 bp assembled on 2006-12-04

GenBank Submission: BT029674

> IP17336.complete
AATAGATCGAATGCAAAACTTTCCACTCGCCTGTGAGAAACTCTTTGCTT
TTTGCTTTCCCGATCGCCAACTGCACTTCAATTGCCGTCAATTAATTGTT
GCCATCTGACTGCACTTGGCACCCATCGATTCCACTCACAGCATTGAATT
GAGGATCTGATTGAGGATTTACGGAGCAGCCGGAATGGAGTGTTTAGTCA
ATGGAATCGGTAGTATCCAATAGATATACGGCCAATCACCGTTTGCACTT
GCACTTCGAAAATTTCGCGGATGCGTTTTCTGATTTCTGGGTTCCGTTCC
TGAGCGAGCGCCGATGTGCGACTGTTCAATGCTCGTCAGGTACTCGAAAT
ATCGGCCATGACTTTGCCAAAGAAAAACTAAAGCAAGTACGGGGATTGTT
GAGCTAACTCGACTGTAAGATACCCTACGACAAGGGTGAGCTGCCTAATG
CTGTCTTCCTGGTTTTACAGGGTGCATCCCCTATGCATTTCGGTTTATAG
GGATGCTGAACTGTGAGGGAACTTTCCAGCAGTTGGATTTCAAAGATATC
AACCCTCTTAAGGCAAACAAATTACGCATTTTTCTTTCTTTCGAATGCAG
ATGGTTTGTTACAACCTCAAAATGCGTTTCTATACGATGCGTAACAGCGC
AATAACCTGATAACAGCATCCATTTCGATCTGTGTGAGATTTTCAGTAAG
GAGCTTTTCAATGTTAATGAACTTGGCATTAGGCTCTTGAATGGAGGCAG
CATCCATGTCCTGGTCAACTGGCGTCTGGAGCACCGAACTGCTGCGCTTG
GCACGCTCTGAAACGTAAGTTCAACGCTCATGTCCGGAATGCACCAACGC
ACCAAAATCATCACCAGGGCAACAAAGTTCTGAAAACAAAATGCAAGCCA
TCAACTAATTTATGCAAAATATTTCATCATCACACGCCCCTGAATTACAA
TATTTAGTCTGCGACGTTGCTGGCGAATTTGGGGTCAAATGAAGCCTACC
AAATGACAACTTTCCAGGCAAGTAAATGGAATTGGCTAAATGCAGCTTAG
ACAGGTGCTAGCCTCAACCCTAATATAATGTGTATTGGGGGCGATATCGT
CGAGTTCTATTCGAAAAAGAAACCCCTTAGAAACCAAAACCGGCACAGCA
GCACACCGCTCAACAAACATGCAACACATGCAACATACTTGACTCGATGG
ACTTTGGATTCTTGCAGCATAAGAAAGACAGAAAGCCGGGAAAGAATGAA
AGGAATACCAAGCAATCTGAAGAATAAAAAAACGGTCGAAATATTGTACA
AAGTTAATTAGGCCGTGTTCAAGATGAAATACTTCGAATTCCTAAGCCTT
TCGTCGGTGGGCCTCTGCATAGCCTGTGGGGACTTGCTATTAGCAGTGAG
CATACTGGGTCCTTCGAGCTTTTACCTATACCTCGATTTCATGGATATTG
AAAAATGGGAACAGGATGCCGAAGTGGAAGCTTTGACTCCCATTGGAACC
TTCTTTTCAACATTGGTGAACTATCTGTGGGTGCGAGAGTTCTCGCAGGT
TTTCTATATGACAGCAACGTTTATAATTTGGGTGAAGGCAATGATAAACC
TAATGGTGGCCTGTATTCTTATCGACGGCATAAAGCAGAAACGTCTCGTA
TGTATTGCTCCCTGGTTGATAAACTCATGCCTATCAATGGTTGTTGAAAC
GGGCATTTTTGTGAGCCTGGAGCTGCGAATTGATGAAGTTGATGCCGCAG
TGGATCGTCGAATAGCGAGAAGCCTAATCTTTGGCGTATTTATAGTGCTG
AACGCGTTATTTTCGTATGGTATCTTTGCTCTTTATCGCAAGCTAAAGTC
TGACCCCAGTGAGAATGTTGAAGTCATTCCCCAAAGCCCGCCACACACAT
TTAATGCCTGAACATACTTAGAATTTACGTTTTGGAACCGACAAATATAA
ATGTTTGAAAAATAATACAAATAAATCTATCCCTAAGTTTTACTCACTTC
AAAAAAAAAAAAAAAAAA

IP17336.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:10:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG34138-RA 2000 CG34138-RA 1..2000 1..2000 9985 99.9 Plus
CG6231-RD 2880 CG6231-RD 1..311 341..31 1555 100 Minus
CG16718-RB 3581 CG16718-RB 2810..2958 808..660 730 99.3 Minus
CG16718-RB 3581 CG16718-RB 2672..2733 879..818 310 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:05:57
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 15458125..15458560 818..1253 2180 100 Plus
chr3R 27901430 chr3R 15451254..15451693 1..440 2170 99.5 Plus
chr3R 27901430 chr3R 15458783..15459048 1251..1516 1315 99.6 Plus
chr3R 27901430 chr3R 15452077..15452304 439..666 1140 100 Plus
chr3R 27901430 chr3R 15459509..15459715 1794..2000 1035 100 Plus
chr3R 27901430 chr3R 15459292..15459450 1637..1795 795 100 Plus
chr3R 27901430 chr3R 15457841..15458000 660..819 785 99.4 Plus
chr3R 27901430 chr3R 15459103..15459225 1516..1638 615 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:31:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:05:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19627414..19627853 1..440 2200 100 Plus
3R 32079331 3R 19634289..19634724 818..1253 2180 100 Plus
3R 32079331 3R 19634947..19635212 1251..1516 1315 99.6 Plus
3R 32079331 3R 19628237..19628464 439..666 1140 100 Plus
3R 32079331 3R 19635673..19635882 1794..2003 1050 100 Plus
3R 32079331 3R 19635456..19635614 1637..1795 795 100 Plus
3R 32079331 3R 19634005..19634164 660..819 785 99.4 Plus
3R 32079331 3R 19635267..19635389 1516..1638 615 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:04:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 19368245..19368684 1..440 2200 100 Plus
3R 31820162 3R 19375120..19375555 818..1253 2180 100 Plus
3R 31820162 3R 19375778..19376043 1251..1516 1315 99.6 Plus
3R 31820162 3R 19369068..19369295 439..666 1140 100 Plus
3R 31820162 3R 19376504..19376713 1794..2003 1050 100 Plus
3R 31820162 3R 19376287..19376445 1637..1795 795 100 Plus
3R 31820162 3R 19374836..19374995 660..819 785 99.3 Plus
3R 31820162 3R 19376098..19376220 1516..1638 615 100 Plus
Blast to na_te.dros performed on 2019-03-16 21:05:55 has no hits.

IP17336.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:07:02 Download gff for IP17336.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 15458785..15459048 1253..1516 99 -> Plus
chr3R 15459104..15459225 1517..1638 100 -> Plus
chr3R 15459294..15459450 1639..1795 100 -> Plus
chr3R 15459511..15459715 1796..2000 100   Plus
chr3R 15451254..15451693 1..440 99 -> Plus
chr3R 15452079..15452304 441..666 100 -> Plus
chr3R 15457848..15458000 667..819 100 -> Plus
chr3R 15458127..15458559 820..1252 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:07:13 Download gff for IP17336.complete
Subject Subject Range Query Range Percent Splice Strand
CG34138-RA 1..588 1324..1911 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:15:01 Download gff for IP17336.complete
Subject Subject Range Query Range Percent Splice Strand
CG34138-RA 1..588 1324..1911 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:45:25 Download gff for IP17336.complete
Subject Subject Range Query Range Percent Splice Strand
CG34138-RA 1..588 1324..1911 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:25:27 Download gff for IP17336.complete
Subject Subject Range Query Range Percent Splice Strand
CG34138-RA 1..588 1324..1911 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:04:06 Download gff for IP17336.complete
Subject Subject Range Query Range Percent Splice Strand
CG34138-RA 1..588 1324..1911 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:43:30 Download gff for IP17336.complete
Subject Subject Range Query Range Percent Splice Strand
CG34138-RA 1..2000 1..2000 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:15:01 Download gff for IP17336.complete
Subject Subject Range Query Range Percent Splice Strand
CG34138-RA 1..748 1253..2000 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:25 Download gff for IP17336.complete
Subject Subject Range Query Range Percent Splice Strand
CG34138-RA 1..748 1253..2000 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:25:27 Download gff for IP17336.complete
Subject Subject Range Query Range Percent Splice Strand
CG34138-RA 1..2000 1..2000 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:06 Download gff for IP17336.complete
Subject Subject Range Query Range Percent Splice Strand
CG34138-RA 1..748 1253..2000 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:07:02 Download gff for IP17336.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19627414..19627853 1..440 100 -> Plus
3R 19628239..19628464 441..666 100 -> Plus
3R 19634012..19634164 667..819 100 -> Plus
3R 19634291..19634723 820..1252 100 -> Plus
3R 19634949..19635212 1253..1516 99 -> Plus
3R 19635268..19635389 1517..1638 100 -> Plus
3R 19635458..19635614 1639..1795 100 -> Plus
3R 19635675..19635879 1796..2000 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:07:02 Download gff for IP17336.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19627414..19627853 1..440 100 -> Plus
3R 19628239..19628464 441..666 100 -> Plus
3R 19634012..19634164 667..819 100 -> Plus
3R 19634291..19634723 820..1252 100 -> Plus
3R 19634949..19635212 1253..1516 99 -> Plus
3R 19635268..19635389 1517..1638 100 -> Plus
3R 19635458..19635614 1639..1795 100 -> Plus
3R 19635675..19635879 1796..2000 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:07:02 Download gff for IP17336.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19627414..19627853 1..440 100 -> Plus
3R 19628239..19628464 441..666 100 -> Plus
3R 19634012..19634164 667..819 100 -> Plus
3R 19634291..19634723 820..1252 100 -> Plus
3R 19634949..19635212 1253..1516 99 -> Plus
3R 19635268..19635389 1517..1638 100 -> Plus
3R 19635458..19635614 1639..1795 100 -> Plus
3R 19635675..19635879 1796..2000 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:25 Download gff for IP17336.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15453136..15453575 1..440 100 -> Plus
arm_3R 15453961..15454186 441..666 100 -> Plus
arm_3R 15459734..15459886 667..819 100 -> Plus
arm_3R 15460013..15460445 820..1252 100 -> Plus
arm_3R 15460671..15460934 1253..1516 99 -> Plus
arm_3R 15460990..15461111 1517..1638 100 -> Plus
arm_3R 15461180..15461336 1639..1795 100 -> Plus
arm_3R 15461397..15461601 1796..2000 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:45:46 Download gff for IP17336.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19376506..19376710 1796..2000 100   Plus
3R 19368245..19368684 1..440 100 -> Plus
3R 19369070..19369295 441..666 100 -> Plus
3R 19374843..19374995 667..819 100 -> Plus
3R 19375122..19375554 820..1252 100 -> Plus
3R 19375780..19376043 1253..1516 99 -> Plus
3R 19376099..19376220 1517..1638 100 -> Plus
3R 19376289..19376445 1639..1795 100 -> Plus

IP17336.pep Sequence

Translation from 1323 to 1910

> IP17336.pep
MKYFEFLSLSSVGLCIACGDLLLAVSILGPSSFYLYLDFMDIEKWEQDAE
VEALTPIGTFFSTLVNYLWVREFSQVFYMTATFIIWVKAMINLMVACILI
DGIKQKRLVCIAPWLINSCLSMVVETGIFVSLELRIDEVDAAVDRRIARS
LIFGVFIVLNALFSYGIFALYRKLKSDPSENVEVIPQSPPHTFNA*

IP17336.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:09:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG34138-PA 195 CG34138-PA 1..195 1..195 997 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:52:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22972-PA 199 GI22972-PA 1..180 1..181 604 63 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:52:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12663-PA 194 GL12663-PA 1..194 1..195 825 79 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:52:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA30257-PA 194 GA30257-PA 1..194 1..195 827 79.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:52:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22732-PA 199 GJ22732-PA 1..180 1..181 614 63 Plus

IP17336.hyp Sequence

Translation from 1323 to 1910

> IP17336.hyp
MKYFEFLSLSSVGLCIACGDLLLAVSILGPSSFYLYLDFMDIEKWEQDAE
VEALTPIGTFFSTLVNYLWVREFSQVFYMTATFIIWVKAMINLMVACILI
DGIKQKRLVCIAPWLINSCLSMVVETGIFVSLELRIDEVDAAVDRRIARS
LIFGVFIVLNALFSYGIFALYRKLKSDPSENVEVIPQSPPHTFNA*

IP17336.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:38:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG34138-PA 195 CG34138-PA 1..195 1..195 997 100 Plus