Clone IP17351 Report

Search the DGRC for IP17351

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:173
Well:51
Vector:pOT2
Associated Gene/TranscriptRpL36A-RA
Protein status:IP17351.pep: gold
Sequenced Size:2247

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
RpL36A 2008-04-29 Release 5.5 accounting
CG14645 2008-08-15 Release 5.9 accounting
CG14645 2008-12-18 5.12 accounting

Clone Sequence Records

IP17351.complete Sequence

2247 bp assembled on 2006-12-23

GenBank Submission: BT029953

> IP17351.complete
CCTAACTCTAGGATACACAATACATTAAAGTTAAAGTTATGAACAAATTC
TACACCTAATTATCTAAATAAGTTGAATAGAAGTTTGTGAACTCTTTCTT
AATGTTACTTTAAAATAAAATTATCTAGCACTAATTTAATTAAAAGAATA
TTAGTATAAAGGACATTTAAAAAGCACTCATTACGTTATTTCATATCATT
TAAAGTCACGCTGACTACCACGCTTACCATTGCAATGAGGCTTTTAAAAA
TCAAATAGTTTTTACATAACAAATGCCTATTGTTGAATGAATAATGCTTT
CATTCGAATGAGAGCTTATATTGCGGGCAATTTTTATACCAACATGTTTA
AATATAAATGTCAATTAAAAATGTGTGCCTTATTTCGTATGCAGTCGATG
ACGCATGTTTTGTGAATCGACCTGGTTAAAATTATCGGCTTACAGCTTAA
GTGTTACGATTTTAACTTGGTTTCTGTCTCATCTGGGTCGCAAAATGCCT
GAATTTCAAGTGAACGTAAATGCACTCACACTCCCATACACTGAAGTGTG
CTGTTTTGCGGGTGAGTGTGTATTTAAATCCTTATTGCGACACCTGCACA
AAGCAAATACCAATTAAAGGCTTTTCACATGCAGTCCAATGCCAACTTTG
GCTGGGTGGTAAGAAATTCGTGTGTGGGAAAGGAGACCGCACATGCATGC
CATTAAGTTGCCACACCCCACCCACTCTCTCTCTTTGCTGCACTTAAAAA
AAAGCACCATTAGGTCCTCAAGTATTCTTGAACATTTTTTCTTACTCCCA
GAAACAGAAATGGTTTCACTTTCTTTTAAGGTTTTATGTTAACAAAAAAT
AGAGTTAAAGCGCTATATATTTTTCTCTCTGTAGGCGGGCAGCTACTCGT
AAACGGAGGACAAACAAATTTACACAAATGGTAGCTGACCGTGTCGTGCT
TGGTCAAGACCAATTTATATGGCCCGGTCAGTACGGCACGAGGTCCTGGA
GTTCGAAGATCGGGTTATTAAGCGTCTACGGTGAGCAGATATGGGTGGAA
CTGAAAATGCCAAGGGCCAAGTCCTGCGTAAGAAGAGAGGCTTCGGCTTT
GTTACCAACATCAAGGATTACTGCACCAATTGTACACTCGCAGGATTCGC
TTACATCGCCAATTCGAGGTGAGTTGTCCAGCTTCCGAAGGTATAATCTC
CAAACATTTAATTGTTTCCATTGACTGTGTAGATTGCATTTTATGGAACG
CATTTTCTGGTTGATTTGTGTGTTCATGTCGTCCTTGGGCTGCTATCAAC
TGATCATGGGATATCAGCGCAGTTTTCCCACACGAGCTGTGAGCATTGTA
TACGAAAGTCTGCCGCCATTTTCCAAATGGAAATTTCCCGCTGTCAGCGT
CTGTGAACTGGCCTACCGTGGAAATCTGTTTCCCAAATTCGAGTCAAGAT
GGTGAACGTACCGAAACAACGCCGCACCTTCTGCAAGAAGTGCAAGGTCC
ACAAGCTGCACAAGGTGACGCAGTACAAGAAGTCCAAGGAGCGCAAGGGA
GCTCAGGGCAGGCGTCGTTACGACAGGAAACAGCAGGGTTTCGGAGGTCA
GACCAAGCCCATCTTCAGGAAGAAGGCCAAGACCACCAAGAAGATTGTGC
TGCGTATGGAGTGCACCGAGTGCAAATACCGCAAGCAGACTCCCCTGAAG
CGTTGCAAGCACTTCGAGCTGGGCGGTGACAAGAAGCGCAAGGGACAGAT
GATCCAGTTCTAGGCACCTTCTTTACACCATTAAAAATCCTTTTTTCGCT
AAAAAAAAAAAAAAAAAACTCGAGGTTCAGCTCGCTCTAACCTCCCTACT
AGTGATTTCTTTTGGCATTGCCCTCGCCTATGATGGTGACGGACAGCCGG
GTTGCAAGACCCAAGCCGAGCTAGACATTGTAGTTTTCCGCAACAATTGG
GATGCCACATCGTATTGGAAGTGTGAGACACTTAACAAACCAGCCATTGA
AATCAAGTGCCCCAGCGAAACAGGATTCATGGATAGTCTCAAGAACTGCG
TCAACTGGGAGGAATGGGAATGGGAGAAACCAGTGGAGCCCCTTAGCGAA
GCGGATCAGTGACCAAACGCACAAAAATAAGAACAGCTAAATGTGATTAT
TTATGTTGTTGAATTGAGAATAAAATAACTGCGTTACGGGTGGCTTACGC
AGCAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

IP17351.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:08:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG14645-RA 418 CG14645-RA 24..412 1823..2211 1945 100 Plus
RpL36A-RA 691 RpL36A-RA 155..513 1444..1802 1795 100 Plus
CG14239-RB 1625 CG14239-RB 1..271 898..1168 1355 100 Plus
CG14239-RB 1625 CG14239-RB 270..482 1231..1443 1065 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:56:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 22226277..22227719 1443..1 7125 99.6 Minus
chr3R 27901430 chr3R 160841..161226 1823..2208 1930 100 Plus
chr2L 23010047 chr2L 8040944..8041122 1802..1624 880 99.4 Minus
chr2L 23010047 chr2L 8041434..8041609 1626..1451 880 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:31:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:56:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26403254..26404696 1443..1 7215 100 Minus
3R 32079331 3R 4335121..4335509 1823..2211 1945 100 Plus
2L 23513712 2L 8041949..8042127 1802..1624 895 100 Minus
2L 23513712 2L 8042439..8042614 1626..1451 880 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:02:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 26144085..26145527 1443..1 7215 100 Minus
3R 31820162 3R 4075952..4076340 1823..2211 1945 100 Plus
2L 23513712 2L 8041949..8042127 1802..1624 895 100 Minus
2L 23513712 2L 8042439..8042614 1626..1451 880 100 Minus
Blast to na_te.dros performed 2019-03-15 15:56:23
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker2 7672 Stalker2 STALKER2 7672bp 1242..1403 49..201 139 60.4 Plus
gypsy7 5486 gypsy7 GYPSY7 5486bp 4852..4925 81..154 118 62.2 Plus

IP17351.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:57:25 Download gff for IP17351.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 22226271..22227719 1..1450 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:07:18 Download gff for IP17351.complete
Subject Subject Range Query Range Percent Splice Strand
RpL36A-RA 1..315 1449..1763 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:11:29 Download gff for IP17351.complete
Subject Subject Range Query Range Percent Splice Strand
RpL36A-RA 1..315 1449..1763 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:46:18 Download gff for IP17351.complete
Subject Subject Range Query Range Percent Splice Strand
RpL36A-RA 1..315 1449..1763 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:21:36 Download gff for IP17351.complete
Subject Subject Range Query Range Percent Splice Strand
RpL36A-RA 1..315 1449..1763 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:21:09 Download gff for IP17351.complete
Subject Subject Range Query Range Percent Splice Strand
RpL36A-RA 1..315 1449..1763 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:40:24 Download gff for IP17351.complete
Subject Subject Range Query Range Percent Splice Strand
CG14645-RA 3..390 1822..2208 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:11:29 Download gff for IP17351.complete
Subject Subject Range Query Range Percent Splice Strand
CG14645-RA 3..390 1822..2208 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-08-04 01:46:18 has no hits.
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:21:36 Download gff for IP17351.complete
Subject Subject Range Query Range Percent Splice Strand
CG14645-RA 3..390 1822..2208 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2014-11-26 21:21:09 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:57:25 Download gff for IP17351.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26403248..26404696 1..1450 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:57:25 Download gff for IP17351.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26403248..26404696 1..1450 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:57:25 Download gff for IP17351.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26403248..26404696 1..1450 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:46:18 Download gff for IP17351.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22228970..22230418 1..1450 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:43:21 Download gff for IP17351.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26144079..26145527 1..1450 99   Minus

IP17351.hyp Sequence

Translation from 927 to 1223

> IP17351.hyp
MVADRVVLGQDQFIWPGQYGTRSWSSKIGLLSVYGEQIWVELKMPRAKSC
VRREASALLPTSRITAPIVHSQDSLTSPIRGELSSFRRYNLQTFNCFH*
Sequence IP17351.hyp has no blast hits.

IP17351.pep Sequence

Translation from 1448 to 1762

> IP17351.pep
MVNVPKQRRTFCKKCKVHKLHKVTQYKKSKERKGAQGRRRYDRKQQGFGG
QTKPIFRKKAKTTKKIVLRMECTECKYRKQTPLKRCKHFELGGDKKRKGQ
MIQF*

IP17351.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:41:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15330-PA 104 GF15330-PA 1..104 1..104 521 100 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:41:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23481-PA 104 GG23481-PA 1..104 1..104 521 100 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:41:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10163-PA 114 GH10163-PA 12..114 2..104 519 100 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:32:28
Subject Length Description Subject Range Query Range Score Percent Strand
RpL36A-PB 104 CG7424-PB 1..104 1..104 562 100 Plus
RpL36A-PA 104 CG7424-PA 1..104 1..104 562 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:41:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22486-PA 108 GI22486-PA 6..108 2..104 513 99 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:42:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19381-PA 111 GL19381-PA 9..111 2..104 512 100 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:42:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20340-PA 111 GA20340-PA 9..111 2..104 512 100 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:42:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13202-PA 104 GM13202-PA 1..104 1..104 521 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:42:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20410-PA 108 GJ20410-PA 6..108 2..104 517 100 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:42:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14804-PA 106 GK14804-PA 3..106 1..104 517 99 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:42:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11210-PA 104 GE11210-PA 1..104 1..104 521 100 Plus