IP17351.complete Sequence
2247 bp assembled on 2006-12-23
GenBank Submission: BT029953
> IP17351.complete
CCTAACTCTAGGATACACAATACATTAAAGTTAAAGTTATGAACAAATTC
TACACCTAATTATCTAAATAAGTTGAATAGAAGTTTGTGAACTCTTTCTT
AATGTTACTTTAAAATAAAATTATCTAGCACTAATTTAATTAAAAGAATA
TTAGTATAAAGGACATTTAAAAAGCACTCATTACGTTATTTCATATCATT
TAAAGTCACGCTGACTACCACGCTTACCATTGCAATGAGGCTTTTAAAAA
TCAAATAGTTTTTACATAACAAATGCCTATTGTTGAATGAATAATGCTTT
CATTCGAATGAGAGCTTATATTGCGGGCAATTTTTATACCAACATGTTTA
AATATAAATGTCAATTAAAAATGTGTGCCTTATTTCGTATGCAGTCGATG
ACGCATGTTTTGTGAATCGACCTGGTTAAAATTATCGGCTTACAGCTTAA
GTGTTACGATTTTAACTTGGTTTCTGTCTCATCTGGGTCGCAAAATGCCT
GAATTTCAAGTGAACGTAAATGCACTCACACTCCCATACACTGAAGTGTG
CTGTTTTGCGGGTGAGTGTGTATTTAAATCCTTATTGCGACACCTGCACA
AAGCAAATACCAATTAAAGGCTTTTCACATGCAGTCCAATGCCAACTTTG
GCTGGGTGGTAAGAAATTCGTGTGTGGGAAAGGAGACCGCACATGCATGC
CATTAAGTTGCCACACCCCACCCACTCTCTCTCTTTGCTGCACTTAAAAA
AAAGCACCATTAGGTCCTCAAGTATTCTTGAACATTTTTTCTTACTCCCA
GAAACAGAAATGGTTTCACTTTCTTTTAAGGTTTTATGTTAACAAAAAAT
AGAGTTAAAGCGCTATATATTTTTCTCTCTGTAGGCGGGCAGCTACTCGT
AAACGGAGGACAAACAAATTTACACAAATGGTAGCTGACCGTGTCGTGCT
TGGTCAAGACCAATTTATATGGCCCGGTCAGTACGGCACGAGGTCCTGGA
GTTCGAAGATCGGGTTATTAAGCGTCTACGGTGAGCAGATATGGGTGGAA
CTGAAAATGCCAAGGGCCAAGTCCTGCGTAAGAAGAGAGGCTTCGGCTTT
GTTACCAACATCAAGGATTACTGCACCAATTGTACACTCGCAGGATTCGC
TTACATCGCCAATTCGAGGTGAGTTGTCCAGCTTCCGAAGGTATAATCTC
CAAACATTTAATTGTTTCCATTGACTGTGTAGATTGCATTTTATGGAACG
CATTTTCTGGTTGATTTGTGTGTTCATGTCGTCCTTGGGCTGCTATCAAC
TGATCATGGGATATCAGCGCAGTTTTCCCACACGAGCTGTGAGCATTGTA
TACGAAAGTCTGCCGCCATTTTCCAAATGGAAATTTCCCGCTGTCAGCGT
CTGTGAACTGGCCTACCGTGGAAATCTGTTTCCCAAATTCGAGTCAAGAT
GGTGAACGTACCGAAACAACGCCGCACCTTCTGCAAGAAGTGCAAGGTCC
ACAAGCTGCACAAGGTGACGCAGTACAAGAAGTCCAAGGAGCGCAAGGGA
GCTCAGGGCAGGCGTCGTTACGACAGGAAACAGCAGGGTTTCGGAGGTCA
GACCAAGCCCATCTTCAGGAAGAAGGCCAAGACCACCAAGAAGATTGTGC
TGCGTATGGAGTGCACCGAGTGCAAATACCGCAAGCAGACTCCCCTGAAG
CGTTGCAAGCACTTCGAGCTGGGCGGTGACAAGAAGCGCAAGGGACAGAT
GATCCAGTTCTAGGCACCTTCTTTACACCATTAAAAATCCTTTTTTCGCT
AAAAAAAAAAAAAAAAAACTCGAGGTTCAGCTCGCTCTAACCTCCCTACT
AGTGATTTCTTTTGGCATTGCCCTCGCCTATGATGGTGACGGACAGCCGG
GTTGCAAGACCCAAGCCGAGCTAGACATTGTAGTTTTCCGCAACAATTGG
GATGCCACATCGTATTGGAAGTGTGAGACACTTAACAAACCAGCCATTGA
AATCAAGTGCCCCAGCGAAACAGGATTCATGGATAGTCTCAAGAACTGCG
TCAACTGGGAGGAATGGGAATGGGAGAAACCAGTGGAGCCCCTTAGCGAA
GCGGATCAGTGACCAAACGCACAAAAATAAGAACAGCTAAATGTGATTAT
TTATGTTGTTGAATTGAGAATAAAATAACTGCGTTACGGGTGGCTTACGC
AGCAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
IP17351.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 17:08:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14645-RA | 418 | CG14645-RA | 24..412 | 1823..2211 | 1945 | 100 | Plus |
RpL36A-RA | 691 | RpL36A-RA | 155..513 | 1444..1802 | 1795 | 100 | Plus |
CG14239-RB | 1625 | CG14239-RB | 1..271 | 898..1168 | 1355 | 100 | Plus |
CG14239-RB | 1625 | CG14239-RB | 270..482 | 1231..1443 | 1065 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:56:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 22226277..22227719 | 1443..1 | 7125 | 99.6 | Minus |
chr3R | 27901430 | chr3R | 160841..161226 | 1823..2208 | 1930 | 100 | Plus |
chr2L | 23010047 | chr2L | 8040944..8041122 | 1802..1624 | 880 | 99.4 | Minus |
chr2L | 23010047 | chr2L | 8041434..8041609 | 1626..1451 | 880 | 100 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:31:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:56:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26403254..26404696 | 1443..1 | 7215 | 100 | Minus |
3R | 32079331 | 3R | 4335121..4335509 | 1823..2211 | 1945 | 100 | Plus |
2L | 23513712 | 2L | 8041949..8042127 | 1802..1624 | 895 | 100 | Minus |
2L | 23513712 | 2L | 8042439..8042614 | 1626..1451 | 880 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:02:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 26144085..26145527 | 1443..1 | 7215 | 100 | Minus |
3R | 31820162 | 3R | 4075952..4076340 | 1823..2211 | 1945 | 100 | Plus |
2L | 23513712 | 2L | 8041949..8042127 | 1802..1624 | 895 | 100 | Minus |
2L | 23513712 | 2L | 8042439..8042614 | 1626..1451 | 880 | 100 | Minus |
Blast to na_te.dros performed 2019-03-15 15:56:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 1242..1403 | 49..201 | 139 | 60.4 | Plus |
gypsy7 | 5486 | gypsy7 GYPSY7 5486bp | 4852..4925 | 81..154 | 118 | 62.2 | Plus |
IP17351.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:57:25 Download gff for
IP17351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 22226271..22227719 | 1..1450 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:07:18 Download gff for
IP17351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL36A-RA | 1..315 | 1449..1763 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:11:29 Download gff for
IP17351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL36A-RA | 1..315 | 1449..1763 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:46:18 Download gff for
IP17351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL36A-RA | 1..315 | 1449..1763 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:21:36 Download gff for
IP17351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL36A-RA | 1..315 | 1449..1763 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:21:09 Download gff for
IP17351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL36A-RA | 1..315 | 1449..1763 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:40:24 Download gff for
IP17351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14645-RA | 3..390 | 1822..2208 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:11:29 Download gff for
IP17351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14645-RA | 3..390 | 1822..2208 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-08-04 01:46:18 has no hits.
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:21:36 Download gff for
IP17351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14645-RA | 3..390 | 1822..2208 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2014-11-26 21:21:09 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:57:25 Download gff for
IP17351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26403248..26404696 | 1..1450 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:57:25 Download gff for
IP17351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26403248..26404696 | 1..1450 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:57:25 Download gff for
IP17351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26403248..26404696 | 1..1450 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:46:18 Download gff for
IP17351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22228970..22230418 | 1..1450 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:43:21 Download gff for
IP17351.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26144079..26145527 | 1..1450 | 99 | | Minus |
IP17351.hyp Sequence
Translation from 927 to 1223
> IP17351.hyp
MVADRVVLGQDQFIWPGQYGTRSWSSKIGLLSVYGEQIWVELKMPRAKSC
VRREASALLPTSRITAPIVHSQDSLTSPIRGELSSFRRYNLQTFNCFH*
Sequence IP17351.hyp has no blast hits.
IP17351.pep Sequence
Translation from 1448 to 1762
> IP17351.pep
MVNVPKQRRTFCKKCKVHKLHKVTQYKKSKERKGAQGRRRYDRKQQGFGG
QTKPIFRKKAKTTKKIVLRMECTECKYRKQTPLKRCKHFELGGDKKRKGQ
MIQF*
IP17351.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:41:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF15330-PA | 104 | GF15330-PA | 1..104 | 1..104 | 521 | 100 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:41:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG23481-PA | 104 | GG23481-PA | 1..104 | 1..104 | 521 | 100 | Plus |
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:41:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dgri\GH10163-PA | 114 | GH10163-PA | 12..114 | 2..104 | 519 | 100 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:32:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL36A-PB | 104 | CG7424-PB | 1..104 | 1..104 | 562 | 100 | Plus |
RpL36A-PA | 104 | CG7424-PA | 1..104 | 1..104 | 562 | 100 | Plus |
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:41:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmoj\GI22486-PA | 108 | GI22486-PA | 6..108 | 2..104 | 513 | 99 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:42:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL19381-PA | 111 | GL19381-PA | 9..111 | 2..104 | 512 | 100 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:42:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA20340-PA | 111 | GA20340-PA | 9..111 | 2..104 | 512 | 100 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:42:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM13202-PA | 104 | GM13202-PA | 1..104 | 1..104 | 521 | 100 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:42:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ20410-PA | 108 | GJ20410-PA | 6..108 | 2..104 | 517 | 100 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:42:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK14804-PA | 106 | GK14804-PA | 3..106 | 1..104 | 517 | 99 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:42:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE11210-PA | 104 | GE11210-PA | 1..104 | 1..104 | 521 | 100 | Plus |