Clone IP17355 Report

Search the DGRC for IP17355

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:173
Well:55
Vector:pOT2
Associated Gene/TranscriptCG4951-RB
Protein status:IP17355.pep: gold
Sequenced Size:1582

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4951 2008-04-29 Release 5.5 accounting
CG4951 2008-08-15 Release 5.9 accounting
CG4951 2008-12-18 5.12 accounting

Clone Sequence Records

IP17355.complete Sequence

1582 bp assembled on 2006-11-28

GenBank Submission: BT029681

> IP17355.complete
CGGCTACGGTCACATCAGGACGCATAGCAATTTTATAAAAATGTCATTTT
CCGCCATCGGTGATTGCCAACTAATTTCGCAATTATACCAGTACAAGAAG
CACCGCGTCATCTGCAGCGTCAAAGTTCTGCCGACACCTGTGACCCATTT
TGAGCGGGAATCCAAGAATGATTTCCATTGGATGACCGCGGATCGGTGGA
GCCGGATTGAGTGTGGTCTATGGCGCCTGTTCGAGAACCTGAAGCAGTGG
CAGGATGCCTACCAACTGGACACCGAGCTCATTATCGATCACATCATCGT
GCGCGTCCAGGCGACCAATAAGTCGCATCCTGCAACGGTCGCTCTTCTGG
CCGGTACGGAGTCCAGCTCCAAGGATCTCTGCCTGGACCTACAGCTGCAG
TACATAACACAAGAGGACACCACCATTGTGGACGTCATTCCCGCCAAGCG
CGAGCTTGCCACGGAAGCAGAAACAAATGGCACCAGACCCACATCCCGCA
AGATCCGCGTAGCAAACTCAGGATCCAAGCCAAAAGCGGGCACACAATCG
AAGCCCAAGCACATTGACGCCGACAACGAGGATGACAAGAGCTCCACCAC
GGCCAGCCAACCAACCAAGATCAAGAGCGAGCGCAGGTCCATTTCCCAAG
GAGGCGAAAAGGATAAGGCTTCTTCCAGCAGCCCCAGTTCCTCGCAGCAG
AGCAACCGCATTAAGCGATCGCACAGTCCATCACAGCAGAATTCCAGATC
CAGCTCCGTTGAGGCCAAGCCTGCACGCCGCTCCGGCCGATCGCCCATAC
GCCCGAGTCGATTCAAAAACTTCGTAGTTGGCGAGACCAGGAGCGGCAAG
AGCAGAGGACCCAAGCCCAAAGTGAAACGAGTATCGCCAGTGCCGGCCAA
AGATTTCAAGGTGGAACACATGGACGGAGGGCGGTTCAATGCATTGCAGC
GGCTGGACAGCATGCTGGACACGCCCAAGCCGCGCGAGGTTAAGATTTTA
CTCTTGGAAAAAATGGGCGAGGACGAGGTGCTGAATACGTTCGAAAACTA
TCGCAGCGACTTCGATAAGCTGTTCAAGGAGCGCGAGTTCAAGCCGCGCA
CCAGTCACTACATGAACATTGCCCACATGGACGTCATCGACATACTGAGC
AAGAGCATTCACCAGCAGATGCTCAAGAAACTGGGCGAGGTCTACAGCAG
TCGAAGCAACCACACGTCGCTGCTGGTGAACGGACTGCTCCCGCTGTGGA
TAGTGCGCCTCTTTATGGACACATACACGCTGTCCCAATCGGAGGCCGTG
CAGCAGATCCGCGACCAGATGAAGTACAACACCTACTTGAGGGCCCTGAA
CGATGAGCCGCTGAGTTCCGATCTTGACTGATCGAGCAATCAATTCACTT
TTTAACTATTTTTTGGTATCCGATTGCGGAAATTTTACATTGCGCGCCAT
ATTAAATAGGCAGTTGTTTTAGTTTTAAATTCATTTGTCTTTATTTGTTT
TGATTGGAATCTGTTGTGTACTAAGCATATTACATTGTATAAATACATAA
TTCACTTGCTTTCGAAAAAAAAAAAAAAAAAA

IP17355.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:11:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG4951.d 2271 CG4951.d 701..2270 1..1570 7850 100 Plus
CG4951-RB 1861 CG4951-RB 291..1860 1..1570 7850 100 Plus
CG4951.c 1861 CG4951.c 291..1860 1..1570 7850 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 23776460..23776911 540..89 2260 100 Minus
chr3R 27901430 chr3R 23775020..23775376 1564..1208 1785 100 Minus
chr3R 27901430 chr3R 23775437..23775644 1207..1000 1040 100 Minus
chr3R 27901430 chr3R 23776105..23776304 739..540 1000 100 Minus
chr3R 27901430 chr3R 23775719..23775887 999..831 830 99.4 Minus
chr3R 27901430 chr3R 23776964..23777054 91..1 455 100 Minus
chr3R 27901430 chr3R 23775955..23776047 831..739 450 98.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:31:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:57:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27953498..27953949 540..89 2260 100 Minus
3R 32079331 3R 27952047..27952414 1575..1208 1825 99.7 Minus
3R 32079331 3R 27952475..27952682 1207..1000 1040 100 Minus
3R 32079331 3R 27953143..27953342 739..540 1000 100 Minus
3R 32079331 3R 27952757..27952925 999..831 845 100 Minus
3R 32079331 3R 27952993..27953085 831..739 465 100 Minus
3R 32079331 3R 27954002..27954092 91..1 455 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:05:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 27694329..27694780 540..89 2260 100 Minus
3R 31820162 3R 27692878..27693245 1575..1208 1825 99.7 Minus
3R 31820162 3R 27693306..27693513 1207..1000 1040 100 Minus
3R 31820162 3R 27693974..27694173 739..540 1000 100 Minus
3R 31820162 3R 27693588..27693756 999..831 845 100 Minus
3R 31820162 3R 27693824..27693916 831..739 465 100 Minus
3R 31820162 3R 27694833..27694923 91..1 455 100 Minus
Blast to na_te.dros performed 2019-03-16 19:57:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\Tom 7060 Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). 1437..1533 1517..1422 131 63.6 Minus

IP17355.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:58:14 Download gff for IP17355.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 23775719..23775886 832..999 99 <- Minus
chr3R 23775955..23776047 739..831 98 <- Minus
chr3R 23776106..23776303 541..738 100 <- Minus
chr3R 23775437..23775644 1000..1207 100 <- Minus
chr3R 23775020..23775376 1208..1564 100 <- Minus
chr3R 23776460..23776908 92..540 100 <- Minus
chr3R 23776964..23777054 1..91 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:07:20 Download gff for IP17355.complete
Subject Subject Range Query Range Percent Splice Strand
CG4951-RB 1..1341 41..1381 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:17:01 Download gff for IP17355.complete
Subject Subject Range Query Range Percent Splice Strand
CG4951-RB 1..1341 41..1381 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:01:26 Download gff for IP17355.complete
Subject Subject Range Query Range Percent Splice Strand
CG4951-RB 1..1341 41..1381 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:27:55 Download gff for IP17355.complete
Subject Subject Range Query Range Percent Splice Strand
CG4951-RB 1..1341 41..1381 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:47:02 Download gff for IP17355.complete
Subject Subject Range Query Range Percent Splice Strand
CG4951-RB 1..1341 41..1381 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:45:33 Download gff for IP17355.complete
Subject Subject Range Query Range Percent Splice Strand
CG4951-RB 21..1584 1..1564 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:17:01 Download gff for IP17355.complete
Subject Subject Range Query Range Percent Splice Strand
CG4951-RB 21..1584 1..1564 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:01:26 Download gff for IP17355.complete
Subject Subject Range Query Range Percent Splice Strand
CG4951-RB 21..1584 1..1564 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:27:58 Download gff for IP17355.complete
Subject Subject Range Query Range Percent Splice Strand
CG4951-RB 1..1564 1..1564 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:47:02 Download gff for IP17355.complete
Subject Subject Range Query Range Percent Splice Strand
CG4951-RB 21..1584 1..1564 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:58:14 Download gff for IP17355.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27953144..27953341 541..738 100 <- Minus
3R 27953498..27953946 92..540 100 <- Minus
3R 27954002..27954092 1..91 100   Minus
3R 27952058..27952414 1208..1564 100 <- Minus
3R 27952475..27952682 1000..1207 100 <- Minus
3R 27952757..27952924 832..999 100 <- Minus
3R 27952993..27953085 739..831 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:58:14 Download gff for IP17355.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27953144..27953341 541..738 100 <- Minus
3R 27953498..27953946 92..540 100 <- Minus
3R 27954002..27954092 1..91 100   Minus
3R 27952058..27952414 1208..1564 100 <- Minus
3R 27952475..27952682 1000..1207 100 <- Minus
3R 27952757..27952924 832..999 100 <- Minus
3R 27952993..27953085 739..831 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:58:14 Download gff for IP17355.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27953144..27953341 541..738 100 <- Minus
3R 27953498..27953946 92..540 100 <- Minus
3R 27954002..27954092 1..91 100   Minus
3R 27952058..27952414 1208..1564 100 <- Minus
3R 27952475..27952682 1000..1207 100 <- Minus
3R 27952757..27952924 832..999 100 <- Minus
3R 27952993..27953085 739..831 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:01:26 Download gff for IP17355.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23778197..23778404 1000..1207 100 <- Minus
arm_3R 23778479..23778646 832..999 100 <- Minus
arm_3R 23778715..23778807 739..831 100 <- Minus
arm_3R 23778866..23779063 541..738 100 <- Minus
arm_3R 23777780..23778136 1208..1564 100 <- Minus
arm_3R 23779220..23779668 92..540 100 <- Minus
arm_3R 23779724..23779814 1..91 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:47:10 Download gff for IP17355.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27692889..27693245 1208..1564 100 <- Minus
3R 27693306..27693513 1000..1207 100 <- Minus
3R 27693588..27693755 832..999 100 <- Minus
3R 27693824..27693916 739..831 100 <- Minus
3R 27693975..27694172 541..738 100 <- Minus
3R 27694329..27694777 92..540 100 <- Minus
3R 27694833..27694923 1..91 100   Minus

IP17355.hyp Sequence

Translation from 0 to 1380

> IP17355.hyp
GYGHIRTHSNFIKMSFSAIGDCQLISQLYQYKKHRVICSVKVLPTPVTHF
ERESKNDFHWMTADRWSRIECGLWRLFENLKQWQDAYQLDTELIIDHIIV
RVQATNKSHPATVALLAGTESSSKDLCLDLQLQYITQEDTTIVDVIPAKR
ELATEAETNGTRPTSRKIRVANSGSKPKAGTQSKPKHIDADNEDDKSSTT
ASQPTKIKSERRSISQGGEKDKASSSSPSSSQQSNRIKRSHSPSQQNSRS
SSVEAKPARRSGRSPIRPSRFKNFVVGETRSGKSRGPKPKVKRVSPVPAK
DFKVEHMDGGRFNALQRLDSMLDTPKPREVKILLLEKMGEDEVLNTFENY
RSDFDKLFKEREFKPRTSHYMNIAHMDVIDILSKSIHQQMLKKLGEVYSS
RSNHTSLLVNGLLPLWIVRLFMDTYTLSQSEAVQQIRDQMKYNTYLRALN
DEPLSSDLD*

IP17355.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:39:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG4951-PB 446 CG4951-PB 1..446 14..459 2291 100 Plus
CG4951-PA 320 CG4951-PA 1..320 14..333 1645 100 Plus

IP17355.pep Sequence

Translation from 40 to 1380

> IP17355.pep
MSFSAIGDCQLISQLYQYKKHRVICSVKVLPTPVTHFERESKNDFHWMTA
DRWSRIECGLWRLFENLKQWQDAYQLDTELIIDHIIVRVQATNKSHPATV
ALLAGTESSSKDLCLDLQLQYITQEDTTIVDVIPAKRELATEAETNGTRP
TSRKIRVANSGSKPKAGTQSKPKHIDADNEDDKSSTTASQPTKIKSERRS
ISQGGEKDKASSSSPSSSQQSNRIKRSHSPSQQNSRSSSVEAKPARRSGR
SPIRPSRFKNFVVGETRSGKSRGPKPKVKRVSPVPAKDFKVEHMDGGRFN
ALQRLDSMLDTPKPREVKILLLEKMGEDEVLNTFENYRSDFDKLFKEREF
KPRTSHYMNIAHMDVIDILSKSIHQQMLKKLGEVYSSRSNHTSLLVNGLL
PLWIVRLFMDTYTLSQSEAVQQIRDQMKYNTYLRALNDEPLSSDLD*

IP17355.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:59:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16135-PA 448 GF16135-PA 1..448 1..446 1397 61.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:59:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12080-PA 439 GG12080-PA 1..439 1..446 1858 82.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:59:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19163-PA 467 GH19163-PA 1..465 1..445 842 42.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:48:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG4951-PB 446 CG4951-PB 1..446 1..446 2291 100 Plus
CG4951-PA 320 CG4951-PA 1..320 1..320 1645 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:59:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23268-PA 469 GI23268-PA 1..468 1..446 923 42.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:00:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23879-PA 247 GL23879-PA 1..239 1..264 379 39.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:00:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18549-PA 460 GA18549-PA 1..459 1..446 700 39.1 Plus
Dpse\GA18549-PB 335 GA18549-PB 1..286 1..264 363 37 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:00:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16306-PA 319 GM16306-PA 1..319 1..320 1532 92.2 Plus
Dsec\GM16307-PA 122 GM16307-PA 1..122 325..446 631 94.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:00:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18044-PA 319 GD18044-PA 1..319 1..320 1522 91.9 Plus
Dsim\GD18045-PA 122 GD18045-PA 1..122 325..446 635 95.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:00:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10769-PA 479 GJ10769-PA 1..477 1..446 958 43.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:00:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22531-PA 269 GK22531-PA 1..263 48..320 324 38.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:00:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10525-PA 319 GE10525-PA 1..319 1..320 1387 84.1 Plus
Dyak\GE10526-PA 122 GE10526-PA 1..122 325..446 623 93.4 Plus