IP17374.complete Sequence
747 bp assembled on 2006-11-29
GenBank Submission: BT029684
> IP17374.complete
AGAACATAATCAAAATTATTAGCTAAAATTTCACGTGAACTTTCTCTCTA
AGCCATCAAACCCCAAATTGGAAGAATGATCAATGAGCTATCCGCTCCTA
AGCTTAAGCTTGTATTCATTAATGTATTTTCGATTTTGCACAGTACCACT
TATTTGAATGTGTACCGCTTATATGCAGACTTAAAAAATGTTAAAGCTGG
CGTGGATGGGTCTAATGAGGAGCTTTGGATCAGGGAAATCTTTACATTCC
TCATCAGTGCTCTCATAGTGATTCGCTTTTGTCTATGCTTCGTAGGATTG
GCTTCTAACATTGTGGCCATATACCCAATTCTAACAAATTCGCAAGCTGA
GATGCTTATGCCTACCATTATAGTGCAGGCCATTGACAAAGTCATTCTAA
ATCTATACGAGATTATTTTGGGCTACGGCAGCTTGTGCTATCTCTATCCT
GAAAGTACGGCTGTTTTCATCTTCTTCCTTATACAGATGGGAGCCAAGAT
TGTCTGCAGCATCTCTGTCTTGAATATTTATTCGGACCATCACAATCACT
TGGCAACTCTAGTTTCCTTCAACGAGGAATCACATAGCTTGGGACCAGAC
AGTGTAGAAGAAATCGAATTGGGGAACCAAAACTTGGATTTTTCCTAACT
AATTATATATATATATATATTTCAAAATAGAATGAATAATATACTATCAA
ATCTGCAGATATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
IP17374.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 17:10:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34307-RB | 720 | CG34307-RB | 2..720 | 1..715 | 3510 | 99.4 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:02:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 7723068..7723387 | 1..320 | 1600 | 100 | Plus |
chr3R | 27901430 | chr3R | 7723447..7723648 | 321..522 | 1010 | 100 | Plus |
chr3R | 27901430 | chr3R | 7723709..7723903 | 522..714 | 910 | 99 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:31:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:02:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11897582..11897901 | 1..320 | 1600 | 100 | Plus |
3R | 32079331 | 3R | 11897961..11898162 | 321..522 | 1010 | 100 | Plus |
3R | 32079331 | 3R | 11898223..11898421 | 522..716 | 900 | 98 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:04:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 11638413..11638732 | 1..320 | 1600 | 100 | Plus |
3R | 31820162 | 3R | 11638792..11638993 | 321..522 | 1010 | 100 | Plus |
3R | 31820162 | 3R | 11639054..11639252 | 522..716 | 910 | 97.9 | Plus |
Blast to na_te.dros performed on 2019-03-16 21:02:46 has no hits.
IP17374.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:03:44 Download gff for
IP17374.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 7723068..7723387 | 1..320 | 100 | -> | Plus |
chr3R | 7723447..7723647 | 321..521 | 100 | -> | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:07:25 Download gff for
IP17374.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34307-RA | 1..450 | 76..524 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:16:06 Download gff for
IP17374.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34307-RB | 1..573 | 76..648 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:45:05 Download gff for
IP17374.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34307-RB | 1..573 | 76..648 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:26:39 Download gff for
IP17374.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34307-RA | 1..450 | 76..524 | 99 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:03:24 Download gff for
IP17374.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34307-RB | 1..573 | 76..648 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:44:40 Download gff for
IP17374.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34307-RA | 1..521 | 1..521 | 100 | -> | Plus |
CG34307-RA | 583..779 | 522..714 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:16:05 Download gff for
IP17374.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34307-RB | 1..718 | 1..714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:05 Download gff for
IP17374.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34307-RB | 1..718 | 1..714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:26:40 Download gff for
IP17374.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34307-RA | 1..521 | 1..521 | 100 | -> | Plus |
CG34307-RA | 583..779 | 522..714 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:24 Download gff for
IP17374.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34307-RB | 1..718 | 1..714 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:03:44 Download gff for
IP17374.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11897582..11897901 | 1..320 | 100 | -> | Plus |
3R | 11897961..11898161 | 321..521 | 100 | -> | Plus |
3R | 11898223..11898419 | 522..714 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:03:44 Download gff for
IP17374.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11897582..11897901 | 1..320 | 100 | -> | Plus |
3R | 11897961..11898161 | 321..521 | 100 | -> | Plus |
3R | 11898223..11898419 | 522..714 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:03:44 Download gff for
IP17374.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11897582..11897901 | 1..320 | 100 | -> | Plus |
3R | 11897961..11898161 | 321..521 | 100 | -> | Plus |
3R | 11898223..11898419 | 522..714 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:05 Download gff for
IP17374.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7723304..7723623 | 1..320 | 100 | -> | Plus |
arm_3R | 7723683..7723883 | 321..521 | 100 | -> | Plus |
arm_3R | 7723945..7724141 | 522..714 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:46:30 Download gff for
IP17374.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11638413..11638732 | 1..320 | 100 | -> | Plus |
3R | 11638792..11638992 | 321..521 | 100 | -> | Plus |
3R | 11639054..11639250 | 522..714 | 97 | | Plus |
IP17374.hyp Sequence
Translation from 75 to 647
> IP17374.hyp
MINELSAPKLKLVFINVFSILHSTTYLNVYRLYADLKNVKAGVDGSNEEL
WIREIFTFLISALIVIRFCLCFVGLASNIVAIYPILTNSQAEMLMPTIIV
QAIDKVILNLYEIILGYGSLCYLYPESTAVFIFFLIQMGAKIVCSISVLN
IYSDHHNHLATLVSFNEESHSLGPDSVEEIELGNQNLDFS*
IP17374.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:39:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34307-PB | 190 | CG34307-PB | 1..190 | 1..190 | 961 | 100 | Plus |
IP17374.pep Sequence
Translation from 75 to 647
> IP17374.pep
MINELSAPKLKLVFINVFSILHSTTYLNVYRLYADLKNVKAGVDGSNEEL
WIREIFTFLISALIVIRFCLCFVGLASNIVAIYPILTNSQAEMLMPTIIV
QAIDKVILNLYEIILGYGSLCYLYPESTAVFIFFLIQMGAKIVCSISVLN
IYSDHHNHLATLVSFNEESHSLGPDSVEEIELGNQNLDFS*
IP17374.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:48:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF23170-PA | 188 | GF23170-PA | 1..186 | 2..187 | 698 | 69.4 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:08:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34307-PB | 190 | CG34307-PB | 1..190 | 1..190 | 961 | 100 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:48:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA30218-PA | 189 | GA30218-PA | 1..186 | 1..187 | 441 | 47.9 | Plus |