Clone IP17403 Report

Search the DGRC for IP17403

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:174
Well:3
Vector:pOT2
Associated Gene/TranscriptCG12004-RC
Protein status:IP17403.pep: gold
Sequenced Size:2165

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12004 2008-04-29 Release 5.5 accounting
CG12004 2008-08-15 Release 5.9 accounting
CG12004 2008-12-18 5.12 accounting

Clone Sequence Records

IP17403.complete Sequence

2165 bp assembled on 2006-11-28

GenBank Submission: BT029687

> IP17403.complete
CACGATTCGTGCGTAGTTTTCATTTATTTTGCTCCGCTTTCCTTCGCTGT
TTTCACACCCACGATCCGCGAAAAAAACATCCAGGAATCGTGTTCAAACA
TTGGCAAACATATTGCGTACCGCCGCGGCCATAAGTCAACCGCTGTAGGC
CATTCTTTTAGCCCCAAACAAGAGCGACGACGTCAGTGGGCGACGCGACT
GGCGTCAGGTGAAAAAAAGAAAGAAAAACGTATTGAGATTTGAAAATCTA
TATAAAACGGGTGCAGCGAAATTAAACGGAATTTGCAACTGTGAAAACGC
TCTAAAGCGTGGAGAGTTGCATTTGAAAAAAGCATGAGCACAACCGCCGC
CAGTCTCATCGAGGCGGCTCTAAATGCCAGTAGTGGAAACGCCACGGCTA
CAACTGCGGGATCGCTTGAGGCTACAGGGAAGCCCAACTACGTGGTGCAG
GTAAAGAACACTCCGATGAGCACGCCGCTGGACCCGCTGCTCCACGTGGG
CGATGGCATCTTCCTGCAGACAAAGACCGCCCAGGTTCTAGCTGGGGTGT
GCGTCTGGGCCGCCCTCTTCATCACATGTCAACAGATCTACCAGCACCTG
CGCTGGTACACGAATCCACAGGAGCAGCGCTGGATCGTGCGCATTTTGTT
CATTGTGCCCATCTATGCCACATACTCCTGGATCAGTCTGCTTTTCTTCA
ACTCGGATAACGTTTACATCTACTTCTTTACGGTGCGCGACTGCTACGAA
GCCTTTGTCATCTACAACTTCTTGTCGCTGTGCTATGAGTACCTGGGTGG
CGAGGGCAATATTATGTCGGAGATTCGCGGCAAGCCCATCAAGACATCGT
GCCTGTATGGCACCTGCTGTCTGAAGGGCAAGACCTACACGATTGGCTTC
CTGCGCTTCTGCAAGCAGGCCACTCTGCAGTTCTGCCTGGTCAAGCCGCT
GGTGGCCTTCATTATCATCTTTCTGCAGGCATTTGGCCACTACCACGATG
GCGATTGGAGTGCTGATGGCGGTTACATTTACATCACGATTATCTACAAC
ATCTCCGTGTCGCTGGCGTTGTATGGCCTCTATCTGTTCTACTTCGCCAC
GCGTGATCTGCTGACTCCGTTCGAGCCCGTGCTAAAGTTCTGTACCATTA
AGTCCGTCATCTTCTTGTCCTTCTGGCAGGGCGTGGGTCTGGCCATCCTG
GAGAAGGCCAATGTTATCTCGCCCATTGTAGACAGTGCAGGCACTGTTAC
CGTGGAACCCGGTACCGTCTCCGCCGGATACCAGAACTTCTTCATCTGCA
TCGAAATGCTGTTCGCCGCCATCGCGCTGCGCTATGCATTCCCCTATCAG
GTCTACGCACGCAGCTGCATCAGCGATGGCCACGGACGGTCTGTCACCAT
GCAGTCCATTTCCAGCAGTCTTAAGGAAACAATGAATCCCAAGGATATTA
TGACAGATGCTATACACAACTTCCATCCGCAGTACCAGCAGTACACGCAG
TACAGCTCAGGTGGCAAGAATTCCCGCGGCATTCGCGTCTCCAGCTACGA
TCCCGACGATCCCAGCTCGGGAGCAGCAGCTGGAGGCATGCAGGCGTCGC
AGCCCACCAGCGGTGGATACGATGCGGTGGCCACTGGACCAGGATCTGGC
GGCAACGGCGGCAGCAACTGCATGGCCTCAAAGACGCTGGGCAACCAGAG
GAAGTTCCAGCCCGGCGGCCAGCGGGTGGCGACCATCAGCCAGAACTACA
ACGAGAAGACCATGCTGCTGAGCAGCGACGATGAGTACCAGTAGAGGAAT
GGAGAGATCGGGATCGATGGTCCCACTTATTGTTAACAAAATCGAGTCTT
TCGTTCGGATCCGATTCGATTCGTTTCGTTTGGTCTATCCAGTGTGCTGA
TTCTGTCGCTTGTACAATAATCTTAGGTAGCCTAGCCGAGCAGCATCACA
CGACCCATTGGGCGGAAGATTAAAGATAACGTAATGATATACCCTGTAAA
GTGGGGTGTGTGTGGCTAGAGAAGTGTAGTCTATGGATAAGTTCAGTACA
ATTTTTTTATTTTAATGGATGCACTTCTGCTTTAACCAATTTGATGATTT
ATATAGAGAATTTTGAAGCATTATCTATAGACTACAGTGGTCCATTAAAA
AAAAAAAAAAAAAAA

IP17403.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:11:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG12004-RC 2344 CG12004-RC 69..2212 1..2144 10720 100 Plus
CG12004.c 2945 CG12004.c 69..2212 1..2144 10720 100 Plus
CG12004.e 3915 CG12004.e 69..1578 1..1510 7550 100 Plus
CG12004.e 3915 CG12004.e 2570..3206 1508..2144 3185 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:01:32
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 1574503..1575138 1508..2144 3045 98.9 Plus
chr3L 24539361 chr3L 1572480..1572828 1004..1352 1700 99.1 Plus
chr3L 24539361 chr3L 1568731..1569062 1..332 1660 100 Plus
chr3L 24539361 chr3L 1572040..1572300 750..1010 1305 100 Plus
chr3L 24539361 chr3L 1571503..1571757 331..585 1275 100 Plus
chr3L 24539361 chr3L 1571808..1571976 583..751 830 99.4 Plus
chr3L 24539361 chr3L 1573196..1573284 1424..1512 445 100 Plus
chr3L 24539361 chr3L 1573062..1573139 1349..1426 390 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:31:36 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:01:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1574985..1575621 1508..2144 3185 100 Plus
3L 28110227 3L 1572962..1573310 1004..1352 1730 99.7 Plus
3L 28110227 3L 1569210..1569541 1..332 1660 100 Plus
3L 28110227 3L 1572522..1572782 750..1010 1305 100 Plus
3L 28110227 3L 1571984..1572238 331..585 1275 100 Plus
3L 28110227 3L 1572289..1572457 583..751 845 100 Plus
3L 28110227 3L 1573678..1573766 1424..1512 445 100 Plus
3L 28110227 3L 1573544..1573621 1349..1426 390 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:05:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 1574985..1575621 1508..2144 3185 100 Plus
3L 28103327 3L 1572962..1573310 1004..1352 1730 99.7 Plus
3L 28103327 3L 1569210..1569541 1..332 1660 100 Plus
3L 28103327 3L 1572522..1572782 750..1010 1305 100 Plus
3L 28103327 3L 1571984..1572238 331..585 1275 100 Plus
3L 28103327 3L 1572289..1572457 583..751 845 100 Plus
3L 28103327 3L 1573678..1573766 1424..1512 445 100 Plus
3L 28103327 3L 1573544..1573621 1349..1426 390 100 Plus
Blast to na_te.dros performed on 2019-03-15 17:01:31 has no hits.

IP17403.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:02:40 Download gff for IP17403.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 1568731..1569062 1..332 100 -> Plus
chr3L 1571505..1571757 333..585 100 -> Plus
chr3L 1571811..1571976 586..751 99 -> Plus
chr3L 1572042..1572300 752..1010 100 -> Plus
chr3L 1572487..1572826 1011..1350 99 -> Plus
chr3L 1573064..1573138 1351..1425 100 -> Plus
chr3L 1573198..1573282 1426..1510 100 -> Plus
chr3L 1574506..1575138 1511..2146 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:07:28 Download gff for IP17403.complete
Subject Subject Range Query Range Percent Splice Strand
CG12004-RC 1..1461 334..1794 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:17:03 Download gff for IP17403.complete
Subject Subject Range Query Range Percent Splice Strand
CG12004-RC 1..1461 334..1794 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:14:14 Download gff for IP17403.complete
Subject Subject Range Query Range Percent Splice Strand
CG12004-RC 1..1461 334..1794 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:28:00 Download gff for IP17403.complete
Subject Subject Range Query Range Percent Splice Strand
CG12004-RC 1..1461 334..1794 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:23:12 Download gff for IP17403.complete
Subject Subject Range Query Range Percent Splice Strand
CG12004-RC 1..1461 334..1794 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:45:35 Download gff for IP17403.complete
Subject Subject Range Query Range Percent Splice Strand
CG12004-RC 11..2154 1..2144 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:17:03 Download gff for IP17403.complete
Subject Subject Range Query Range Percent Splice Strand
CG12004-RC 11..2154 1..2144 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:14:14 Download gff for IP17403.complete
Subject Subject Range Query Range Percent Splice Strand
CG12004-RC 30..2172 1..2143 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:28:00 Download gff for IP17403.complete
Subject Subject Range Query Range Percent Splice Strand
CG12004-RC 11..2154 1..2144 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:23:12 Download gff for IP17403.complete
Subject Subject Range Query Range Percent Splice Strand
CG12004-RD 30..2173 1..2146 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:02:40 Download gff for IP17403.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1569210..1569541 1..332 100 -> Plus
3L 1571986..1572238 333..585 100 -> Plus
3L 1572292..1572457 586..751 100 -> Plus
3L 1572524..1572782 752..1010 100 -> Plus
3L 1572969..1573308 1011..1350 100 -> Plus
3L 1573546..1573620 1351..1425 100 -> Plus
3L 1573680..1573764 1426..1510 100 -> Plus
3L 1574988..1575621 1511..2146 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:02:40 Download gff for IP17403.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1569210..1569541 1..332 100 -> Plus
3L 1571986..1572238 333..585 100 -> Plus
3L 1572292..1572457 586..751 100 -> Plus
3L 1572524..1572782 752..1010 100 -> Plus
3L 1572969..1573308 1011..1350 100 -> Plus
3L 1573546..1573620 1351..1425 100 -> Plus
3L 1573680..1573764 1426..1510 100 -> Plus
3L 1574988..1575621 1511..2146 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:02:40 Download gff for IP17403.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1569210..1569541 1..332 100 -> Plus
3L 1571986..1572238 333..585 100 -> Plus
3L 1572292..1572457 586..751 100 -> Plus
3L 1572524..1572782 752..1010 100 -> Plus
3L 1572969..1573308 1011..1350 100 -> Plus
3L 1573546..1573620 1351..1425 100 -> Plus
3L 1573680..1573764 1426..1510 100 -> Plus
3L 1574988..1575621 1511..2146 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:14:14 Download gff for IP17403.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1571986..1572238 333..585 100 -> Plus
arm_3L 1572524..1572782 752..1010 100 -> Plus
arm_3L 1572292..1572457 586..751 100 -> Plus
arm_3L 1569210..1569541 1..332 100 -> Plus
arm_3L 1572969..1573308 1011..1350 100 -> Plus
arm_3L 1573546..1573620 1351..1425 100 -> Plus
arm_3L 1573680..1573764 1426..1510 100 -> Plus
arm_3L 1574988..1575621 1511..2146 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:47:12 Download gff for IP17403.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1569210..1569541 1..332 100 -> Plus
3L 1571986..1572238 333..585 100 -> Plus
3L 1572292..1572457 586..751 100 -> Plus
3L 1572524..1572782 752..1010 100 -> Plus
3L 1572969..1573308 1011..1350 100 -> Plus
3L 1573546..1573620 1351..1425 100 -> Plus
3L 1573680..1573764 1426..1510 100 -> Plus
3L 1574988..1575621 1511..2146 99   Plus

IP17403.pep Sequence

Translation from 333 to 1793

> IP17403.pep
MSTTAASLIEAALNASSGNATATTAGSLEATGKPNYVVQVKNTPMSTPLD
PLLHVGDGIFLQTKTAQVLAGVCVWAALFITCQQIYQHLRWYTNPQEQRW
IVRILFIVPIYATYSWISLLFFNSDNVYIYFFTVRDCYEAFVIYNFLSLC
YEYLGGEGNIMSEIRGKPIKTSCLYGTCCLKGKTYTIGFLRFCKQATLQF
CLVKPLVAFIIIFLQAFGHYHDGDWSADGGYIYITIIYNISVSLALYGLY
LFYFATRDLLTPFEPVLKFCTIKSVIFLSFWQGVGLAILEKANVISPIVD
SAGTVTVEPGTVSAGYQNFFICIEMLFAAIALRYAFPYQVYARSCISDGH
GRSVTMQSISSSLKETMNPKDIMTDAIHNFHPQYQQYTQYSSGGKNSRGI
RVSSYDPDDPSSGAAAGGMQASQPTSGGYDAVATGPGSGGNGGSNCMASK
TLGNQRKFQPGGQRVATISQNYNEKTMLLSSDDEYQ*

IP17403.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:02:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10420-PA 406 GF10420-PA 1..395 1..392 1897 94.2 Plus
Dana\GF14144-PA 563 GF14144-PA 33..318 47..341 462 35.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:02:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14801-PA 403 GG14801-PA 1..392 1..392 2086 99.2 Plus
Dere\GG14802-PA 102 GG14802-PA 7..102 393..486 473 95.8 Plus
Dere\GG23987-PA 493 GG23987-PA 33..318 47..341 457 35.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:02:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14506-PA 407 GH14506-PA 1..396 1..392 1819 91.9 Plus
Dgri\GH10663-PA 535 GH10663-PA 33..317 47..341 477 36.9 Plus
Dgri\GH14507-PA 100 GH14507-PA 6..100 388..486 361 77 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:25:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG12004-PD 486 CG12004-PD 1..486 1..486 2563 100 Plus
CG12004-PC 486 CG12004-PC 1..486 1..486 2563 100 Plus
CG12004-PB 403 CG12004-PB 1..392 1..392 2070 100 Plus
CG12004-PA 403 CG12004-PA 1..392 1..392 2070 100 Plus
CG5850-PE 468 CG5850-PE 34..461 48..479 453 29.7 Plus
CG5850-PF 469 CG5850-PF 34..462 48..479 451 29.5 Plus
CG5850-PC 490 CG5850-PC 34..318 48..341 449 35.7 Plus
CG5850-PD 491 CG5850-PD 34..318 48..341 449 35.7 Plus
CG5850-PA 491 CG5850-PA 34..318 48..341 449 35.7 Plus
CG5850-PG 608 CG5850-PG 34..318 48..341 449 35.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:02:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13282-PA 410 GI13282-PA 1..399 1..392 1788 90 Plus
Dmoj\GI10963-PA 371 GI10963-PA 4..155 187..341 253 37.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:02:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17141-PA 408 GL17141-PA 1..397 1..392 1843 93.5 Plus
Dper\GL19192-PA 573 GL19192-PA 33..417 47..445 460 31 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:02:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11327-PA 408 GA11327-PA 1..397 1..392 1843 93.5 Plus
Dpse\GA19178-PA 553 GA19178-PA 33..424 47..452 460 30.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:02:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14424-PA 403 GM14424-PA 1..392 1..392 2101 100 Plus
Dsec\GM12071-PA 491 GM12071-PA 33..318 47..341 458 35.6 Plus
Dsec\GM14425-PA 101 GM14425-PA 2..101 387..486 410 93 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:02:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13627-PA 403 GD13627-PA 1..392 1..392 2101 100 Plus
Dsim\GD22317-PA 534 GD22317-PA 33..324 47..341 426 34.2 Plus
Dsim\GD13628-PA 101 GD13628-PA 2..101 387..486 415 94 Plus
Dsim\GD15093-PA 78 GD15093-PA 1..69 325..393 371 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:02:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12049-PA 411 GJ12049-PA 1..400 1..392 1813 90.8 Plus
Dvir\GJ18301-PA 493 GJ18301-PA 33..423 47..452 474 31.7 Plus
Dvir\GJ12050-PA 101 GJ12050-PA 10..101 394..486 339 75.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:02:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12568-PA 406 GK12568-PA 1..395 1..392 1866 91.4 Plus
Dwil\GK14536-PA 575 GK14536-PA 33..318 47..341 466 37.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:02:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21163-PA 403 GE21163-PA 1..392 1..392 2101 100 Plus
Dyak\GE21164-PA 103 GE21164-PA 7..103 393..486 472 94.8 Plus
Dyak\GE10093-PA 491 GE10093-PA 33..318 47..341 458 35.6 Plus

IP17403.hyp Sequence

Translation from 333 to 1793

> IP17403.hyp
MSTTAASLIEAALNASSGNATATTAGSLEATGKPNYVVQVKNTPMSTPLD
PLLHVGDGIFLQTKTAQVLAGVCVWAALFITCQQIYQHLRWYTNPQEQRW
IVRILFIVPIYATYSWISLLFFNSDNVYIYFFTVRDCYEAFVIYNFLSLC
YEYLGGEGNIMSEIRGKPIKTSCLYGTCCLKGKTYTIGFLRFCKQATLQF
CLVKPLVAFIIIFLQAFGHYHDGDWSADGGYIYITIIYNISVSLALYGLY
LFYFATRDLLTPFEPVLKFCTIKSVIFLSFWQGVGLAILEKANVISPIVD
SAGTVTVEPGTVSAGYQNFFICIEMLFAAIALRYAFPYQVYARSCISDGH
GRSVTMQSISSSLKETMNPKDIMTDAIHNFHPQYQQYTQYSSGGKNSRGI
RVSSYDPDDPSSGAAAGGMQASQPTSGGYDAVATGPGSGGNGGSNCMASK
TLGNQRKFQPGGQRVATISQNYNEKTMLLSSDDEYQ*

IP17403.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:40:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG12004-PD 486 CG12004-PD 1..486 1..486 2563 100 Plus
CG12004-PC 486 CG12004-PC 1..486 1..486 2563 100 Plus
CG12004-PB 403 CG12004-PB 1..392 1..392 2070 100 Plus
CG12004-PA 403 CG12004-PA 1..392 1..392 2070 100 Plus
CG5850-PE 468 CG5850-PE 34..461 48..479 453 29.7 Plus