Clone IP17475 Report

Search the DGRC for IP17475

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:174
Well:75
Vector:pOT2
Associated Gene/TranscriptCG12360-RC
Protein status:IP17475.pep: gold
Sequenced Size:1335

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12360 2008-04-29 Release 5.5 accounting
CG12360 2008-08-15 Release 5.9 accounting
CG12360 2008-12-18 5.12 accounting

Clone Sequence Records

IP17475.complete Sequence

1335 bp assembled on 2006-11-29

GenBank Submission: BT029708

> IP17475.complete
CCCGACTGAACATAATCAACTGGCAATGTACGACACGTAGGCAGAAAAGT
AAAACAAATTTGCATTTTGCAGAGATTCTTCGCCAGATGTTTAAACGTCG
CCTCGCCAGCAACCGAAACCGAATTTCCACTAGCAACCGATTCTTCCAGG
CCTCCAACTGACCCAACTGAACACGACCATGGACGTATCCGCCTCCACGT
CGTTTGAATCCTCGCCGGACAAGAGAAACAGCATCTATGTGGGCGACAAC
ACTTTCTACGACAGCGCCCTGGATCACCAGCTGTCCACCACGGCCTACAA
GTCGTGCAATGGTAAGCATCCAAACCTATACAAAGCCCTCAAGATCCTGA
GTAGCAGAGATCCGCGAACGGAGGGCCACGTCTTCCAGGAGAATCACCCG
TTCTCCTCGAAAGCAGAAAAGTTTCAGCGGTCGGAAAAAGAAGTAGACCT
CTCTACATACGGGCAGGACACGGATATGGACCACAAGTTAACCGAAATGG
GTAATCAAAGCGCTTCCTTCACAAATCCGGAGTATATAGGAGAATCGGAA
GAAGATGAGTTTCCTTCGAGAGCTATTTACGAGCAAAAGAACCTCATAGA
TGAGCACGACCAATTGGATCGCAAGGTTAATGAGCTCAAACTGAAGCTCG
TTGTTCTGCAAATTCAAACAAGACATCAGAAGCAAACGATCGAGAATCTT
AAATTGCAGAGCAGCCAAAAGCTGAGCTTCAGTCAGAGCATAAAGAAAAC
AATAATGGTAGCAGCCCGAGAGAGTCTGCAATCCCAAACGCCCGATACGT
TTCCCGATCATTTAATATCGCAAATATTTGCGCCATTTGCGGACGATGAG
AAACTTAATGATCATTTTAAGAATATGGACTACGAACTGAAGCAAATAGT
GCAGAAAATGTGCAGACATGCCTACGAAAGCCAGAAGCCTTTCCTAAAAG
ACACTATCAGTGAGAAGATTAAGAAGCTTAAGCAGAGGCTTATTCAAAAG
TATGAGGACCAGTTGGACAGGCAAAAAGAAAGCCAACAGCGAAACGCGTT
AGCCATGAAGCAAAAGTGTTTTGATTTGCTGAAGCAGTTCCTTTTAACCG
ACTGCCAAGATGAAAGTTGCAACGAAGATTATATAAAGAAGCTGGAAGCT
CTATATGAACAGGAAATCTTAAAAAAATAAATTATATTTACGTTATGTTT
TGAATGATACAATTCACAAAAATGCACAATTCACACAAAATTTATAATGC
AATTTATACAATTCATATATATTTTATGTTGATTTTTATTAAACTTGATG
TAAACCTTGAAAAAAAAAAAAAAAAAAAAAAAAAA

IP17475.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:10:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG12360-RC 1310 CG12360-RC 1..1310 1..1310 6505 99.7 Plus
CG12360-RB 2118 CG12360-RB 66..376 1..311 1540 99.6 Plus
CG12360.c 2906 CG12360.c 66..376 1..311 1540 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:02:02
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 8854147..8855380 1309..76 6110 99.7 Minus
chr3R 27901430 chr3R 8855448..8855522 75..1 360 98.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:32:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:02:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13028920..13030154 1310..76 6145 99.8 Minus
3R 32079331 3R 13030222..13030296 75..1 360 98.7 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:04:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 12769751..12770985 1310..76 6145 99.8 Minus
3R 31820162 3R 12771053..12771127 75..1 360 98.6 Minus
Blast to na_te.dros performed 2019-03-15 17:02:00
Subject Length Description Subject Range Query Range Score Percent Strand
412 7567 412 412 7567bp 1182..1248 1302..1235 130 69.6 Minus
hopper 1435 hopper DMTRDNA 1435bp Derived from X80025 (g510507) (Rel. 44, Last updated, Version 11). 648..711 1230..1296 111 67.2 Plus

IP17475.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:02:53 Download gff for IP17475.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 8854147..8855380 76..1309 97 <- Minus
chr3R 8855448..8855522 1..75 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:07:55 Download gff for IP17475.complete
Subject Subject Range Query Range Percent Splice Strand
CG12360-RC 1..1002 179..1180 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:15:49 Download gff for IP17475.complete
Subject Subject Range Query Range Percent Splice Strand
CG12360-RC 1..1002 179..1180 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:14:28 Download gff for IP17475.complete
Subject Subject Range Query Range Percent Splice Strand
CG12360-RC 1..1002 179..1180 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:26:27 Download gff for IP17475.complete
Subject Subject Range Query Range Percent Splice Strand
CG12360-RC 1..1002 179..1180 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:23:35 Download gff for IP17475.complete
Subject Subject Range Query Range Percent Splice Strand
CG12360-RC 1..1002 179..1180 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:44:29 Download gff for IP17475.complete
Subject Subject Range Query Range Percent Splice Strand
CG12360-RC 1..1309 1..1309 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:15:48 Download gff for IP17475.complete
Subject Subject Range Query Range Percent Splice Strand
CG12360-RC 1..1309 1..1309 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:14:28 Download gff for IP17475.complete
Subject Subject Range Query Range Percent Splice Strand
CG12360-RC 1..1309 1..1309 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:26:27 Download gff for IP17475.complete
Subject Subject Range Query Range Percent Splice Strand
CG12360-RC 1..1309 1..1309 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:23:35 Download gff for IP17475.complete
Subject Subject Range Query Range Percent Splice Strand
CG12360-RC 1..1309 1..1309 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:02:53 Download gff for IP17475.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13028921..13030154 76..1309 99 <- Minus
3R 13030222..13030296 1..75 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:02:53 Download gff for IP17475.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13028921..13030154 76..1309 99 <- Minus
3R 13030222..13030296 1..75 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:02:53 Download gff for IP17475.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13028921..13030154 76..1309 99 <- Minus
3R 13030222..13030296 1..75 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:14:28 Download gff for IP17475.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8854643..8855876 76..1309 99 <- Minus
arm_3R 8855944..8856018 1..75 98   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:46:18 Download gff for IP17475.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12769752..12770985 76..1309 99 <- Minus
3R 12771053..12771127 1..75 98   Minus

IP17475.pep Sequence

Translation from 178 to 1179

> IP17475.pep
MDVSASTSFESSPDKRNSIYVGDNTFYDSALDHQLSTTAYKSCNGKHPNL
YKALKILSSRDPRTEGHVFQENHPFSSKAEKFQRSEKEVDLSTYGQDTDM
DHKLTEMGNQSASFTNPEYIGESEEDEFPSRAIYEQKNLIDEHDQLDRKV
NELKLKLVVLQIQTRHQKQTIENLKLQSSQKLSFSQSIKKTIMVAARESL
QSQTPDTFPDHLISQIFAPFADDEKLNDHFKNMDYELKQIVQKMCRHAYE
SQKPFLKDTISEKIKKLKQRLIQKYEDQLDRQKESQQRNALAMKQKCFDL
LKQFLLTDCQDESCNEDYIKKLEALYEQEILKK*

IP17475.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:46:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18088-PA 541 GF18088-PA 1..47 1..44 179 72.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:46:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17082-PA 532 GG17082-PA 1..44 1..44 227 95.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:19:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG46281-PA 234 CG46281-PA 1..234 100..333 1197 100 Plus
CG46280-PB 532 CG46280-PB 1..44 1..44 229 100 Plus
CG46280-PA 532 CG46280-PA 1..44 1..44 229 100 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:46:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23149-PA 954 GL23149-PA 269..458 142..332 383 39.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:46:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27159-PC 289 GA27159-PC 16..285 11..329 412 33.5 Plus
Dpse\GA27162-PC 318 GA27162-PC 16..314 11..329 406 33.1 Plus
Dpse\GA27159-PD 558 GA27159-PD 368..554 142..329 379 39.4 Plus
Dpse\GA27162-PD 599 GA27162-PD 409..595 142..329 378 39.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:46:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25964-PA 532 GM25964-PA 1..44 1..44 233 97.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:46:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20525-PA 532 GD20525-PA 1..44 1..44 230 95.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:46:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10803-PA 567 GJ10803-PA 1..47 1..44 157 63.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:46:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24471-PA 532 GE24471-PA 1..44 1..44 227 95.5 Plus

IP17475.hyp Sequence

Translation from 178 to 1179

> IP17475.hyp
MDVSASTSFESSPDKRNSIYVGDNTFYDSALDHQLSTTAYKSCNGKHPNL
YKALKILSSRDPRTEGHVFQENHPFSSKAEKFQRSEKEVDLSTYGQDTDM
DHKLTEMGNQSASFTNPEYIGESEEDEFPSRAIYEQKNLIDEHDQLDRKV
NELKLKLVVLQIQTRHQKQTIENLKLQSSQKLSFSQSIKKTIMVAARESL
QSQTPDTFPDHLISQIFAPFADDEKLNDHFKNMDYELKQIVQKMCRHAYE
SQKPFLKDTISEKIKKLKQRLIQKYEDQLDRQKESQQRNALAMKQKCFDL
LKQFLLTDCQDESCNEDYIKKLEALYEQEILKK*

IP17475.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:42:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG12360-PC 333 CG12360-PC 1..333 1..333 1717 100 Plus
CG12360-PB 532 CG12360-PB 1..44 1..44 229 100 Plus
CG12360-PA 532 CG12360-PA 1..44 1..44 229 100 Plus