Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
IP17475.complete Sequence
1335 bp assembled on 2006-11-29
GenBank Submission: BT029708
> IP17475.complete
CCCGACTGAACATAATCAACTGGCAATGTACGACACGTAGGCAGAAAAGT
AAAACAAATTTGCATTTTGCAGAGATTCTTCGCCAGATGTTTAAACGTCG
CCTCGCCAGCAACCGAAACCGAATTTCCACTAGCAACCGATTCTTCCAGG
CCTCCAACTGACCCAACTGAACACGACCATGGACGTATCCGCCTCCACGT
CGTTTGAATCCTCGCCGGACAAGAGAAACAGCATCTATGTGGGCGACAAC
ACTTTCTACGACAGCGCCCTGGATCACCAGCTGTCCACCACGGCCTACAA
GTCGTGCAATGGTAAGCATCCAAACCTATACAAAGCCCTCAAGATCCTGA
GTAGCAGAGATCCGCGAACGGAGGGCCACGTCTTCCAGGAGAATCACCCG
TTCTCCTCGAAAGCAGAAAAGTTTCAGCGGTCGGAAAAAGAAGTAGACCT
CTCTACATACGGGCAGGACACGGATATGGACCACAAGTTAACCGAAATGG
GTAATCAAAGCGCTTCCTTCACAAATCCGGAGTATATAGGAGAATCGGAA
GAAGATGAGTTTCCTTCGAGAGCTATTTACGAGCAAAAGAACCTCATAGA
TGAGCACGACCAATTGGATCGCAAGGTTAATGAGCTCAAACTGAAGCTCG
TTGTTCTGCAAATTCAAACAAGACATCAGAAGCAAACGATCGAGAATCTT
AAATTGCAGAGCAGCCAAAAGCTGAGCTTCAGTCAGAGCATAAAGAAAAC
AATAATGGTAGCAGCCCGAGAGAGTCTGCAATCCCAAACGCCCGATACGT
TTCCCGATCATTTAATATCGCAAATATTTGCGCCATTTGCGGACGATGAG
AAACTTAATGATCATTTTAAGAATATGGACTACGAACTGAAGCAAATAGT
GCAGAAAATGTGCAGACATGCCTACGAAAGCCAGAAGCCTTTCCTAAAAG
ACACTATCAGTGAGAAGATTAAGAAGCTTAAGCAGAGGCTTATTCAAAAG
TATGAGGACCAGTTGGACAGGCAAAAAGAAAGCCAACAGCGAAACGCGTT
AGCCATGAAGCAAAAGTGTTTTGATTTGCTGAAGCAGTTCCTTTTAACCG
ACTGCCAAGATGAAAGTTGCAACGAAGATTATATAAAGAAGCTGGAAGCT
CTATATGAACAGGAAATCTTAAAAAAATAAATTATATTTACGTTATGTTT
TGAATGATACAATTCACAAAAATGCACAATTCACACAAAATTTATAATGC
AATTTATACAATTCATATATATTTTATGTTGATTTTTATTAAACTTGATG
TAAACCTTGAAAAAAAAAAAAAAAAAAAAAAAAAA
IP17475.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 17:10:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12360-RC | 1310 | CG12360-RC | 1..1310 | 1..1310 | 6505 | 99.7 | Plus |
CG12360-RB | 2118 | CG12360-RB | 66..376 | 1..311 | 1540 | 99.6 | Plus |
CG12360.c | 2906 | CG12360.c | 66..376 | 1..311 | 1540 | 99.6 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:02:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 8854147..8855380 | 1309..76 | 6110 | 99.7 | Minus |
chr3R | 27901430 | chr3R | 8855448..8855522 | 75..1 | 360 | 98.7 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:32:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:02:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13028920..13030154 | 1310..76 | 6145 | 99.8 | Minus |
3R | 32079331 | 3R | 13030222..13030296 | 75..1 | 360 | 98.7 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:04:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 12769751..12770985 | 1310..76 | 6145 | 99.8 | Minus |
3R | 31820162 | 3R | 12771053..12771127 | 75..1 | 360 | 98.6 | Minus |
Blast to na_te.dros performed 2019-03-15 17:02:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
412 | 7567 | 412 412 7567bp | 1182..1248 | 1302..1235 | 130 | 69.6 | Minus |
hopper | 1435 | hopper DMTRDNA 1435bp Derived from X80025 (g510507) (Rel. 44, Last updated, Version 11). | 648..711 | 1230..1296 | 111 | 67.2 | Plus |
IP17475.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:02:53 Download gff for
IP17475.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 8854147..8855380 | 76..1309 | 97 | <- | Minus |
chr3R | 8855448..8855522 | 1..75 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:07:55 Download gff for
IP17475.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12360-RC | 1..1002 | 179..1180 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:15:49 Download gff for
IP17475.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12360-RC | 1..1002 | 179..1180 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:14:28 Download gff for
IP17475.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12360-RC | 1..1002 | 179..1180 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:26:27 Download gff for
IP17475.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12360-RC | 1..1002 | 179..1180 | 99 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:23:35 Download gff for
IP17475.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12360-RC | 1..1002 | 179..1180 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:44:29 Download gff for
IP17475.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12360-RC | 1..1309 | 1..1309 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:15:48 Download gff for
IP17475.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12360-RC | 1..1309 | 1..1309 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:14:28 Download gff for
IP17475.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12360-RC | 1..1309 | 1..1309 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:26:27 Download gff for
IP17475.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12360-RC | 1..1309 | 1..1309 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:23:35 Download gff for
IP17475.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12360-RC | 1..1309 | 1..1309 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:02:53 Download gff for
IP17475.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13028921..13030154 | 76..1309 | 99 | <- | Minus |
3R | 13030222..13030296 | 1..75 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:02:53 Download gff for
IP17475.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13028921..13030154 | 76..1309 | 99 | <- | Minus |
3R | 13030222..13030296 | 1..75 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:02:53 Download gff for
IP17475.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13028921..13030154 | 76..1309 | 99 | <- | Minus |
3R | 13030222..13030296 | 1..75 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:14:28 Download gff for
IP17475.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8854643..8855876 | 76..1309 | 99 | <- | Minus |
arm_3R | 8855944..8856018 | 1..75 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:46:18 Download gff for
IP17475.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12769752..12770985 | 76..1309 | 99 | <- | Minus |
3R | 12771053..12771127 | 1..75 | 98 | | Minus |
IP17475.pep Sequence
Translation from 178 to 1179
> IP17475.pep
MDVSASTSFESSPDKRNSIYVGDNTFYDSALDHQLSTTAYKSCNGKHPNL
YKALKILSSRDPRTEGHVFQENHPFSSKAEKFQRSEKEVDLSTYGQDTDM
DHKLTEMGNQSASFTNPEYIGESEEDEFPSRAIYEQKNLIDEHDQLDRKV
NELKLKLVVLQIQTRHQKQTIENLKLQSSQKLSFSQSIKKTIMVAARESL
QSQTPDTFPDHLISQIFAPFADDEKLNDHFKNMDYELKQIVQKMCRHAYE
SQKPFLKDTISEKIKKLKQRLIQKYEDQLDRQKESQQRNALAMKQKCFDL
LKQFLLTDCQDESCNEDYIKKLEALYEQEILKK*
IP17475.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:46:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF18088-PA | 541 | GF18088-PA | 1..47 | 1..44 | 179 | 72.3 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:46:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG17082-PA | 532 | GG17082-PA | 1..44 | 1..44 | 227 | 95.5 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:19:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG46281-PA | 234 | CG46281-PA | 1..234 | 100..333 | 1197 | 100 | Plus |
CG46280-PB | 532 | CG46280-PB | 1..44 | 1..44 | 229 | 100 | Plus |
CG46280-PA | 532 | CG46280-PA | 1..44 | 1..44 | 229 | 100 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:46:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL23149-PA | 954 | GL23149-PA | 269..458 | 142..332 | 383 | 39.3 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:46:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA27159-PC | 289 | GA27159-PC | 16..285 | 11..329 | 412 | 33.5 | Plus |
Dpse\GA27162-PC | 318 | GA27162-PC | 16..314 | 11..329 | 406 | 33.1 | Plus |
Dpse\GA27159-PD | 558 | GA27159-PD | 368..554 | 142..329 | 379 | 39.4 | Plus |
Dpse\GA27162-PD | 599 | GA27162-PD | 409..595 | 142..329 | 378 | 39.4 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:46:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM25964-PA | 532 | GM25964-PA | 1..44 | 1..44 | 233 | 97.7 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:46:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD20525-PA | 532 | GD20525-PA | 1..44 | 1..44 | 230 | 95.5 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:46:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ10803-PA | 567 | GJ10803-PA | 1..47 | 1..44 | 157 | 63.8 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:46:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE24471-PA | 532 | GE24471-PA | 1..44 | 1..44 | 227 | 95.5 | Plus |
IP17475.hyp Sequence
Translation from 178 to 1179
> IP17475.hyp
MDVSASTSFESSPDKRNSIYVGDNTFYDSALDHQLSTTAYKSCNGKHPNL
YKALKILSSRDPRTEGHVFQENHPFSSKAEKFQRSEKEVDLSTYGQDTDM
DHKLTEMGNQSASFTNPEYIGESEEDEFPSRAIYEQKNLIDEHDQLDRKV
NELKLKLVVLQIQTRHQKQTIENLKLQSSQKLSFSQSIKKTIMVAARESL
QSQTPDTFPDHLISQIFAPFADDEKLNDHFKNMDYELKQIVQKMCRHAYE
SQKPFLKDTISEKIKKLKQRLIQKYEDQLDRQKESQQRNALAMKQKCFDL
LKQFLLTDCQDESCNEDYIKKLEALYEQEILKK*
IP17475.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:42:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12360-PC | 333 | CG12360-PC | 1..333 | 1..333 | 1717 | 100 | Plus |
CG12360-PB | 532 | CG12360-PB | 1..44 | 1..44 | 229 | 100 | Plus |
CG12360-PA | 532 | CG12360-PA | 1..44 | 1..44 | 229 | 100 | Plus |