Clone IP17752 Report

Search the DGRC for IP17752

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:177
Well:52
Vector:pOT2
Associated Gene/Transcriptmrj-RF
Protein status:IP17752.pep: gold
Sequenced Size:2162

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
mrj 2008-04-29 Release 5.5 accounting
mrj 2008-08-15 Release 5.9 accounting
mrj 2008-12-18 5.12 accounting

Clone Sequence Records

IP17752.complete Sequence

2162 bp assembled on 2007-11-06

GenBank Submission: BT031115

> IP17752.complete
CAGAATCTACGATGCCCGGGCCACGCTGCACAAATCCTCGAACAGCGGAA
GCAGCAGCAGCAACAGCAGCTCCTATACCCGCTATCGCAACGGCGGCACC
GGTGGATCGTCGTCCTATGGACGGGACTACGACTACGACTACTATCCGGG
CTCGGGGTATGGGTCTGGTTCCGGGCGGCGTTCCGGCAACCGGTACCAGG
CCTTCACGTTTCGCAACATTTTCGAGGGCACTCCGTTCCACAAGATGTTC
GGTAAAGGCGAGAGGCCAAAAGCGTTGCAATTGTTTCGTTACTTTGGTTT
TGCTGACTGACATCCTGGCGCACGTCGTTTTGTTTTTCGTTCGTCATTCT
ATCTGCAACTAAACGCTGTTTTCGTACAGTGATGGGGGAGCATTCATAAG
CATTCATAACCTTTCCCACCACTGTTTCCATGCTAAGTCTAAGCTAATCC
TCGCAGCTCGAGCGTTTATTACTAATTAATTGCATTTACTTTCCTGTTGT
TTCACACCCAACTTACCATGTACTCCCATTTCTTAACAGAGAAAAAGCGT
CGCATATACGATGAGTATGGCAAAGATGGACTGGGCGATCGTGGCCAGAG
TCGCTCGCATGCCCGCCACCATTATAGCACACACGATTTCGATGACTTCG
ATATTTTGGGCGGCTTTCAGTTTGCATTCCGCCCGCCCGAGGAAGTGTTC
CGTGAGTTCTTCGGCATCCACTCGCCCTTCGCCGACTTATTCCGAGATGC
CAATGGACATTCGAATGGCAGCACAAGCGGCTCGAGTGGCAGTCGACGCA
ATGGCGGCAGCAGTGGATCATCTCGCCACCATCATCATCACCACCAGCAC
AAAGTGGCCAGTCCGTTCGGGGCTCCAATGCTTAACTACTCAATGATGGA
CTTCTTTATGCCCACCAGCGGCTTCACCTCGTTCTCGTCGATGACCCACG
GCAATGGCAGCAGCGGTGTCACCCACATCTCCAGCGGACCCGGTGCCAGT
GTCAAGCGCACCTCCACTTCGACGGTGTTTGTGAATGGCAAGAAACTGAT
GACCAAACGGGTCGTCGAAAACGGCAAGGAAACTGTCTTTTCATATGAAA
ATGATGTTCTGAAATCAAAGACTGTGATGGGCTCCCTTCAATAGCTAATT
AATTAAATTCACACATAATATATATATATATAAATATCAACAAAAATCAA
CAAAGGAAAAGTCATAAATGTAAAGCCGAATGAATATTAACAAGCCCAAG
AAGAACTCGGAATTCGTTACCGCTTCGAAATATGATACTTTTAAAACTTT
AAAACTTTGCTCTACACTACAATTTAGTTACTTTTAATGGACCGAACAGC
ACCATAAATGAATCAACAGCCAGCGAAAGGACCAAGCAAAAATTAATCAA
CAGCAGAAACACTAACAGCAGCGATATCCACACCAAAAATATGGAACATG
GAACAGGCCATTGAATTAAATCAAAATTCCCCGTAATAGCGAAATATTGA
AATTTATTTTTTAAGCATAGTTTTTGAACACAGCTGCCCTACAACAAAAT
TGCACCGGTGGAATAAAGCCAACACCATCGAGCACCACGAGAATTAATGG
AAAAACCATACTGAAAATTTAGCCAATAAGTTTTAGGGGCCAGATTTTAA
ATATGCTGTTCGGAGCGAGTGTGTTTGGGTGTATATCTTTTTGGGGGGGA
TAATTATGTATTCTTCGTGTATGTATCGTTAGTCACTTAAGTTGCCACAA
TACTTACTAGGAAATCGAAAGCGGAGAAATTCAATCTAAGCAATGAATCG
GAACTAAAATAGGCTTTGCGTTAATTTTTCTTTACATTGTAAGGGATATG
AATATGAATATTCTAAACGATGACATTTAATTTTTATAAATATTTCATAA
CCTAGATTTCTTTATTAATTTCGATGCTGTATGCTAGCGTATAGTCGTTT
TTTAAATGCTTAAGACTATTCTCACATAACCTGCAGAGCGAAAAGAAAAT
TAATCGTAACATAATCGCCAATAATTTAATACTTTGTTAAGCGAAAATTT
CATAATGAGAATAAAAAAAAAAACACATGAGAATGAAAATATACAATAGA
TGCGAAACAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

IP17752.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:33:36
Subject Length Description Subject Range Query Range Score Percent Strand
mrj-RE 2383 mrj-RE 760..2335 539..2114 7865 99.9 Plus
mrj-RC 2221 mrj-RC 598..2173 539..2114 7865 99.9 Plus
mrj-RA 2086 mrj-RA 425..2000 539..2114 7865 99.9 Plus
mrj-RE 2383 mrj-RE 510..760 1..251 1255 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:25:55
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 12090651..12091704 2112..1059 5255 99.9 Minus
chr2R 21145070 chr2R 12092147..12092892 746..1 3730 100 Minus
chr2R 21145070 chr2R 12091763..12092078 1060..745 1580 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:33:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:25:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16203327..16204382 2114..1059 5265 99.9 Minus
2R 25286936 2R 16204825..16205570 746..1 3730 100 Minus
2R 25286936 2R 16204441..16204756 1060..745 1580 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:29:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 16204526..16205581 2114..1059 5265 99.9 Minus
2R 25260384 2R 16206024..16206769 746..1 3730 100 Minus
2R 25260384 2R 16205640..16205955 1060..745 1580 100 Minus
Blast to na_te.dros performed 2019-03-15 17:25:53
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 1222..1326 1986..2098 160 63.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2344..2394 41..91 147 76.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6707..6784 25..102 138 64.1 Plus
roo 9092 roo DM_ROO 9092bp 1040..1138 1..102 133 64.4 Plus
TART-C 11124 TART-C TARTC 11124bp 9181..9282 51..156 133 61.3 Plus
roo 9092 roo DM_ROO 9092bp 1084..1162 25..102 131 64.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6744..6805 41..102 130 67.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6786..6847 41..102 130 67.7 Plus
TART-A 13424 TART-A 13424bp 11054..11112 48..105 130 71.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2623..2673 41..91 129 72.5 Plus
GATE 8507 GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). 1170..1244 2074..2001 129 65.3 Minus
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 804..912 1988..2090 125 64 Plus
roo 9092 roo DM_ROO 9092bp 1095..1151 44..100 123 68.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6826..6898 30..102 122 63 Plus
gypsy10 6006 gypsy10 GYPSY10 6006bp 751..850 1998..2093 122 65.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2365..2424 41..100 120 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6765..6824 41..100 120 66.7 Plus
TAHRE 10463 TAHRE OSV 10463bp 7965..8036 1173..1241 118 66.7 Plus
G3 4605 G3 G3 4605bp 2495..2683 1834..1668 117 61.3 Minus
gypsy11 4428 gypsy11 GYPSY11 4428bp 964..1029 36..102 116 67.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2491..2540 41..90 115 70 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6894..6925 41..72 115 84.4 Plus
roo 9092 roo DM_ROO 9092bp 1113..1142 41..70 114 86.7 Plus

IP17752.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:26:32 Download gff for IP17752.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 12090651..12091703 1060..2112 95 <- Minus
chr2R 12091764..12092076 747..1059 100 <- Minus
chr2R 12092147..12092892 1..746 95   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:09:42 Download gff for IP17752.complete
Subject Subject Range Query Range Percent Splice Strand
mrj-RB 164..780 530..1144 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:02:40 Download gff for IP17752.complete
Subject Subject Range Query Range Percent Splice Strand
mrj-RB 164..780 530..1144 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:36:18 Download gff for IP17752.complete
Subject Subject Range Query Range Percent Splice Strand
mrj-RF 1..627 518..1144 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:48:05 Download gff for IP17752.complete
Subject Subject Range Query Range Percent Splice Strand
mrj-RE 433..1041 533..1144 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:37:43 Download gff for IP17752.complete
Subject Subject Range Query Range Percent Splice Strand
mrj-RF 1..627 518..1144 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 16:50:23 Download gff for IP17752.complete
Subject Subject Range Query Range Percent Splice Strand
mrj-RB 488..2072 530..2112 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:02:40 Download gff for IP17752.complete
Subject Subject Range Query Range Percent Splice Strand
mrj-RB 488..2072 530..2112 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:36:18 Download gff for IP17752.complete
Subject Subject Range Query Range Percent Splice Strand
mrj-RF 1..2112 1..2112 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:48:05 Download gff for IP17752.complete
Subject Subject Range Query Range Percent Splice Strand
mrj-RB 488..2072 530..2112 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:37:43 Download gff for IP17752.complete
Subject Subject Range Query Range Percent Splice Strand
mrj-RF 1..2112 1..2112 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:26:32 Download gff for IP17752.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16204442..16204754 747..1059 100 <- Minus
2R 16203329..16204381 1060..2112 99 <- Minus
2R 16204825..16205570 1..746 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:26:32 Download gff for IP17752.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16204442..16204754 747..1059 100 <- Minus
2R 16203329..16204381 1060..2112 99 <- Minus
2R 16204825..16205570 1..746 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:26:32 Download gff for IP17752.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16204442..16204754 747..1059 100 <- Minus
2R 16203329..16204381 1060..2112 99 <- Minus
2R 16204825..16205570 1..746 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:36:18 Download gff for IP17752.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12090834..12091886 1060..2112 99 <- Minus
arm_2R 12091947..12092259 747..1059 100 <- Minus
arm_2R 12092330..12093075 1..746 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:54:38 Download gff for IP17752.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16204528..16205580 1060..2112 99 <- Minus
2R 16205641..16205953 747..1059 100 <- Minus
2R 16206024..16206769 1..746 100   Minus

IP17752.pep Sequence

Translation from 517 to 1143

> IP17752.pep
MYSHFLTEKKRRIYDEYGKDGLGDRGQSRSHARHHYSTHDFDDFDILGGF
QFAFRPPEEVFREFFGIHSPFADLFRDANGHSNGSTSGSSGSRRNGGSSG
SSRHHHHHHQHKVASPFGAPMLNYSMMDFFMPTSGFTSFSSMTHGNGSSG
VTHISSGPGASVKRTSTSTVFVNGKKLMTKRVVENGKETVFSYENDVLKS
KTVMGSLQ*

IP17752.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:19:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12761-PA 351 GF12761-PA 138..344 4..208 712 85 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:19:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22292-PA 353 GG22292-PA 143..346 4..208 785 87.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:19:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22993-PA 360 GH22993-PA 152..353 4..208 646 70.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:13:12
Subject Length Description Subject Range Query Range Score Percent Strand
mrj-PF 208 CG8448-PF 1..208 1..208 1114 100 Plus
mrj-PG 346 CG8448-PG 142..346 4..208 1080 98.5 Plus
mrj-PH 346 CG8448-PH 142..346 4..208 1080 98.5 Plus
mrj-PE 346 CG8448-PE 142..346 4..208 1080 98.5 Plus
mrj-PA 259 CG8448-PA 53..259 2..208 1076 97.6 Plus
mrj-PC 259 CG8448-PC 53..259 2..208 1076 97.6 Plus
mrj-PB 259 CG8448-PB 53..259 2..208 1076 97.6 Plus
mrj-PD 259 CG8448-PD 53..259 2..208 1076 97.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:19:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18961-PA 355 GI18961-PA 139..348 4..208 706 72.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:19:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10681-PA 357 GL10681-PA 138..350 4..208 784 77.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:19:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21086-PA 357 GA21086-PA 138..350 4..208 785 77.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:19:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20081-PA 344 GM20081-PA 140..344 4..208 877 95.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:19:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25559-PA 346 GD25559-PA 142..346 4..208 866 95.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:19:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21568-PA 352 GJ21568-PA 141..345 4..208 730 76.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:19:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17894-PA 352 GK17894-PA 139..345 4..208 823 82.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:19:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14089-PA 351 GE14089-PA 142..345 4..208 810 90.2 Plus

IP17752.hyp Sequence

Translation from 517 to 1143

> IP17752.hyp
MYSHFLTEKKRRIYDEYGKDGLGDRGQSRSHARHHYSTHDFDDFDILGGF
QFAFRPPEEVFREFFGIHSPFADLFRDANGHSNGSTSGSSGSRRNGGSSG
SSRHHHHHHQHKVASPFGAPMLNYSMMDFFMPTSGFTSFSSMTHGNGSSG
VTHISSGPGASVKRTSTSTVFVNGKKLMTKRVVENGKETVFSYENDVLKS
KTVMGSLQ*

IP17752.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:46:36
Subject Length Description Subject Range Query Range Score Percent Strand
mrj-PF 208 CG8448-PF 1..208 1..208 1114 100 Plus
mrj-PA 259 CG8448-PA 53..259 2..208 1076 97.6 Plus
mrj-PC 259 CG8448-PC 53..259 2..208 1076 97.6 Plus
mrj-PB 259 CG8448-PB 53..259 2..208 1076 97.6 Plus
mrj-PD 259 CG8448-PD 53..259 2..208 1076 97.6 Plus