Clone IP17956 Report

Search the DGRC for IP17956

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:179
Well:56
Vector:pOT2
Associated Gene/TranscriptMapmodulin-RC
Protein status:IP17956.pep: gold
Sequenced Size:1380

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Mapmodulin 2008-04-29 Release 5.5 accounting
Mapmodulin 2008-08-15 Release 5.9 accounting
Mapmodulin 2008-12-18 5.12 accounting

Clone Sequence Records

IP17956.complete Sequence

1380 bp assembled on 2007-01-16

GenBank Submission: BT030189

> IP17956.complete
CCCAAAGGAAGAAAAACACACAAAAATACAAGGAATCCGCTAAGGAAAAA
AGCGTAACCAAAAAGAACATCCAAAACAAACAAGTGCCGCTGCAATGGAG
AAGAGAATAGAACTGGAAAGACGCGCACGCAAAGTAAATCAGATCACAGA
GCTGAATCTGGACAACTGCCGTAGTACAAGCATCGTTGGCCTTACAGATG
AATACACAGCCTTGGAATCGCTTAGCTTGATCAACGTGGGTCTCACCACA
CTGAAAGGTTTCCCCAAGCTGCCCAATTTAAAGAAGCTCGAACTGTCCGA
CAATCGGATTTCGAGTGGCCTCAACTATCTGACCACTAGCCCCAAACTGC
AATATCTCAACTTGTCTGGCAACAAGATAAAGGATCTGGAAACCCTGAAG
CCCCTGGAGGAGTTTAAAAATCTGGTTGTTCTGGATTTGTTTAATAACGA
CGCTACTCAAGTGGATAATTACCGCGAGAAGATCTTCAAGATGTTGCCAT
CGTTAAATTTCCTAGATGGATTTGATTGCAACGACGAGGAGGTGCAATCT
GATGGCGATGATGATGATGAGGTCAACGGCAACGATTCCGACGAAGTGGG
AGATAAGTGCAATGCATTCTGTTTAAATGGTTTAGAGATCGATTTAGACG
AGCTCGAGGCTTTCGAGAAGCGGGTTAAGGCGAAAAAAAGTTTGCAGGAC
AAACCACCTCCCCAATCGGAGGACAAAGAAGTAGACGAATTAGATGAATA
CTTGAAAGAGTTGCAGCTAAGGGAATCTACTGATGCTTCAACCGATGAAC
AATCTGTGATAAATGCCACACCGCAGCCTCCTAGCAATTCTAACTTAAGT
TTTGTAATCCTGCTGTATTGGTTCCTTGCCATTTTAAATTTGGGCAGTGC
TACATATTTTTCCGACGAAGATGACGACAGCGATGATAGCGACGAAGAGG
CGAATGGTGAAGTGTCCCTGTCGGAGGTGTACAATGACGATTTGGAAGAG
GATAACTCTGATTGGGAAGGCGAAGACGAGGCTGGCGAGGAGGACGAGGA
AGAGGATTCCGATATTGATGATGCCGATGGTGATGCAAACGAATCGGCTG
CATCAGTGAATGCCAAGGACAAGGATGGCGAAAAGGAAGCAGACGAGTCG
CAAGTCAGAGGCAAGAAGAGAAAGCATGATGGTTAAAACCCTGATCTGTC
GGTATAGCGTCTTTGTACGTTATAAATTTAAATATACACCCACACACAAA
ACAAAAACACACACACACATCATATTTTGATAGAAAAAGATGATAAATCC
TTTAGGAAACCCACAATTTGTTTCTCTAAAATGTAAGCTAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

IP17956.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:08:04
Subject Length Description Subject Range Query Range Score Percent Strand
Mapmodulin.a 2500 Mapmodulin.a 298..1674 1..1377 6720 99.2 Plus
Mapmodulin-RD 2500 Mapmodulin-RD 298..1674 1..1377 6720 99.2 Plus
Mapmodulin-RC 1636 Mapmodulin-RC 298..1636 1..1339 6695 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:39:46
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 13755631..13756009 519..141 1865 99.5 Minus
chr2R 21145070 chr2R 13754981..13755288 908..601 1480 98.7 Minus
chr2R 21145070 chr2R 13754524..13754757 1142..909 1155 99.6 Minus
chr2R 21145070 chr2R 13754247..13754446 1339..1140 970 99 Minus
chr2R 21145070 chr2R 13758528..13758669 142..1 710 100 Minus
chr2R 21145070 chr2R 13755486..13755569 602..519 405 98.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:34:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:39:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17868432..17868810 519..141 1895 100 Minus
2R 25286936 2R 17867783..17868090 908..601 1540 100 Minus
2R 25286936 2R 17867326..17867559 1142..909 1170 100 Minus
2R 25286936 2R 17867019..17867256 1377..1140 1025 95.4 Minus
2R 25286936 2R 17871329..17871470 142..1 710 100 Minus
2R 25286936 2R 17868287..17868370 602..519 420 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:02:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 17869631..17870009 519..141 1895 100 Minus
2R 25260384 2R 17868982..17869289 908..601 1540 100 Minus
2R 25260384 2R 17868525..17868758 1142..909 1170 100 Minus
2R 25260384 2R 17868218..17868455 1377..1140 1025 95.3 Minus
2R 25260384 2R 17872528..17872669 142..1 710 100 Minus
2R 25260384 2R 17869486..17869569 602..519 420 100 Minus
Blast to na_te.dros performed on 2019-03-16 00:39:45 has no hits.

IP17956.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:40:38 Download gff for IP17956.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 13754247..13754443 1143..1339 98 <- Minus
chr2R 13754524..13754757 909..1142 99 <- Minus
chr2R 13754981..13755286 603..908 98 <- Minus
chr2R 13755486..13755568 520..602 98 <- Minus
chr2R 13755631..13756007 143..519 99 <- Minus
chr2R 13758528..13758669 1..142 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:10:40 Download gff for IP17956.complete
Subject Subject Range Query Range Percent Splice Strand
Mapmodulin-RD 1..1092 95..1186 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:10:26 Download gff for IP17956.complete
Subject Subject Range Query Range Percent Splice Strand
Mapmodulin-RD 1..1092 95..1186 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:13:47 Download gff for IP17956.complete
Subject Subject Range Query Range Percent Splice Strand
Mapmodulin-RC 1..1092 95..1186 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:20:35 Download gff for IP17956.complete
Subject Subject Range Query Range Percent Splice Strand
Mapmodulin-RC 1..1092 95..1186 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:08:09 Download gff for IP17956.complete
Subject Subject Range Query Range Percent Splice Strand
Mapmodulin-RC 1..1092 95..1186 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:39:28 Download gff for IP17956.complete
Subject Subject Range Query Range Percent Splice Strand
Mapmodulin-RD 298..1636 1..1339 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:10:26 Download gff for IP17956.complete
Subject Subject Range Query Range Percent Splice Strand
Mapmodulin-RD 298..1636 1..1339 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:13:47 Download gff for IP17956.complete
Subject Subject Range Query Range Percent Splice Strand
Mapmodulin-RC 45..1383 1..1339 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:20:35 Download gff for IP17956.complete
Subject Subject Range Query Range Percent Splice Strand
Mapmodulin-RC 298..1636 1..1339 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:08:09 Download gff for IP17956.complete
Subject Subject Range Query Range Percent Splice Strand
Mapmodulin-RC 45..1383 1..1339 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:40:38 Download gff for IP17956.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17867326..17867559 909..1142 100 <- Minus
2R 17867057..17867253 1143..1339 100 <- Minus
2R 17867783..17868088 603..908 100 <- Minus
2R 17868287..17868369 520..602 100 <- Minus
2R 17868432..17868808 143..519 100 <- Minus
2R 17871329..17871470 1..142 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:40:38 Download gff for IP17956.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17867326..17867559 909..1142 100 <- Minus
2R 17867057..17867253 1143..1339 100 <- Minus
2R 17867783..17868088 603..908 100 <- Minus
2R 17868287..17868369 520..602 100 <- Minus
2R 17868432..17868808 143..519 100 <- Minus
2R 17871329..17871470 1..142 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:40:38 Download gff for IP17956.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17867326..17867559 909..1142 100 <- Minus
2R 17867057..17867253 1143..1339 100 <- Minus
2R 17867783..17868088 603..908 100 <- Minus
2R 17868287..17868369 520..602 100 <- Minus
2R 17868432..17868808 143..519 100 <- Minus
2R 17871329..17871470 1..142 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:13:47 Download gff for IP17956.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13758834..13758975 1..142 100   Minus
arm_2R 13754562..13754758 1143..1339 100 <- Minus
arm_2R 13754831..13755064 909..1142 100 <- Minus
arm_2R 13755288..13755593 603..908 100 <- Minus
arm_2R 13755792..13755874 520..602 100 <- Minus
arm_2R 13755937..13756313 143..519 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:42:33 Download gff for IP17956.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17868256..17868452 1143..1339 100 <- Minus
2R 17868525..17868758 909..1142 100 <- Minus
2R 17868982..17869287 603..908 100 <- Minus
2R 17869486..17869568 520..602 100 <- Minus
2R 17869631..17870007 143..519 100 <- Minus
2R 17872528..17872669 1..142 100   Minus

IP17956.pep Sequence

Translation from 94 to 1185

> IP17956.pep
MEKRIELERRARKVNQITELNLDNCRSTSIVGLTDEYTALESLSLINVGL
TTLKGFPKLPNLKKLELSDNRISSGLNYLTTSPKLQYLNLSGNKIKDLET
LKPLEEFKNLVVLDLFNNDATQVDNYREKIFKMLPSLNFLDGFDCNDEEV
QSDGDDDDEVNGNDSDEVGDKCNAFCLNGLEIDLDELEAFEKRVKAKKSL
QDKPPPQSEDKEVDELDEYLKELQLRESTDASTDEQSVINATPQPPSNSN
LSFVILLYWFLAILNLGSATYFSDEDDDSDDSDEEANGEVSLSEVYNDDL
EEDNSDWEGEDEAGEEDEEEDSDIDDADGDANESAASVNAKDKDGEKEAD
ESQVRGKKRKHDG*

IP17956.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:36:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13217-PA 366 GF13217-PA 1..366 1..363 1342 80.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:36:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21011-PA 260 GG21011-PA 1..169 1..169 861 98.2 Plus
Dere\GG21011-PA 260 GG21011-PA 173..260 276..363 391 93.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:36:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21742-PA 261 GH21742-PA 1..171 1..170 841 96.5 Plus
Dgri\GH21742-PA 261 GH21742-PA 186..261 287..363 210 77.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:10:36
Subject Length Description Subject Range Query Range Score Percent Strand
Mapmodulin-PD 363 CG5784-PD 1..363 1..363 1868 100 Plus
Mapmodulin-PC 363 CG5784-PC 1..363 1..363 1868 100 Plus
Mapmodulin-PA 261 CG5784-PA 1..261 1..363 888 57.3 Plus
Mapmodulin-PB 261 CG5784-PB 1..261 1..363 888 57.3 Plus
l(2)01289-PG 1191 CG9432-PG 771..968 141..362 160 24.2 Plus
l(2)01289-PM 1193 CG9432-PM 771..968 141..362 160 24.2 Plus
l(2)01289-PG 1191 CG9432-PG 751..921 141..351 156 26.5 Plus
l(2)01289-PM 1193 CG9432-PM 751..921 141..351 156 26.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:36:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19290-PA 372 GI19290-PA 1..372 1..363 1256 76.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:36:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17265-PA 263 GL17265-PA 1..167 1..167 829 95.2 Plus
Dper\GL17265-PA 263 GL17265-PA 189..263 287..363 173 75.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:36:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19125-PB 292 GA19125-PB 1..197 1..198 938 92.9 Plus
Dpse\GA19125-PA 263 GA19125-PA 1..167 1..167 829 95.2 Plus
Dpse\GA19125-PB 292 GA19125-PB 218..292 287..363 173 75.3 Plus
Dpse\GA19125-PA 263 GA19125-PA 189..263 287..363 173 75.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19943-PA 262 GM19943-PA 1..169 1..169 870 99.4 Plus
Dsec\GM19943-PA 262 GM19943-PA 174..262 275..363 412 96.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25433-PA 262 GD25433-PA 1..169 1..169 870 99.4 Plus
Dsim\GD25433-PA 262 GD25433-PA 174..262 275..363 412 96.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:36:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22166-PA 258 GJ22166-PA 1..166 1..166 818 94 Plus
Dvir\GJ22166-PA 258 GJ22166-PA 184..258 287..363 175 77.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:36:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22070-PA 259 GK22070-PA 1..169 1..168 814 93.5 Plus
Dwil\GK22069-PA 767 GK22069-PA 1..165 1..167 792 92.2 Plus
Dwil\GK22070-PA 259 GK22070-PA 177..259 278..363 170 67.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:36:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13954-PA 263 GE13954-PA 1..169 1..169 861 98.2 Plus
Dyak\GE13954-PA 263 GE13954-PA 174..263 274..363 375 87.8 Plus

IP17956.hyp Sequence

Translation from 94 to 1185

> IP17956.hyp
MEKRIELERRARKVNQITELNLDNCRSTSIVGLTDEYTALESLSLINVGL
TTLKGFPKLPNLKKLELSDNRISSGLNYLTTSPKLQYLNLSGNKIKDLET
LKPLEEFKNLVVLDLFNNDATQVDNYREKIFKMLPSLNFLDGFDCNDEEV
QSDGDDDDEVNGNDSDEVGDKCNAFCLNGLEIDLDELEAFEKRVKAKKSL
QDKPPPQSEDKEVDELDEYLKELQLRESTDASTDEQSVINATPQPPSNSN
LSFVILLYWFLAILNLGSATYFSDEDDDSDDSDEEANGEVSLSEVYNDDL
EEDNSDWEGEDEAGEEDEEEDSDIDDADGDANESAASVNAKDKDGEKEAD
ESQVRGKKRKHDG*

IP17956.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:49:36
Subject Length Description Subject Range Query Range Score Percent Strand
Mapmodulin-PD 363 CG5784-PD 1..363 1..363 1868 100 Plus
Mapmodulin-PC 363 CG5784-PC 1..363 1..363 1868 100 Plus
Mapmodulin-PA 261 CG5784-PA 1..261 1..363 888 57.3 Plus
Mapmodulin-PB 261 CG5784-PB 1..261 1..363 888 57.3 Plus
l(2)01289-PG 1191 CG9432-PG 771..968 141..362 160 24.2 Plus