Clone IP17978 Report

Search the DGRC for IP17978

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:179
Well:78
Vector:pOT2
Associated Gene/TranscriptCG8248-RB
Protein status:IP17978.pep: gold
Sequenced Size:2288

Clone Sequence Records

IP17978.complete Sequence

2288 bp assembled on 2009-03-02

GenBank Submission: BT071793.1

> IP17978.complete
CGGCTATGAAATCTCTGGCCGGCGATAAATTTGCTCTGTCCGAAGAGATT
GGGCCACCGCCTTGTTCTCCCAAACACCGAAAAGCAAGTGCCGTGAGTAG
GGACACGGATACAAATAACCATCATGTGGTGCCGCTGGGGATCCTCGTGG
TGCTCTGCACTGTGTATCTCATGGTAGCCGGGATGCAGCGCAACTACAGG
CACTATTTTAAGCCGGGCGTGGCTGCCTTCGACCTGCACCATGCCCAGCC
GGAAGCCATGGCCGACGCCGAATTGGATGTCGCCGCTCCAGATGCATCGT
GCCAGAGGTTGGACGTTTTCGGAAAGGAATCCAATCGGAATCAGGCAGTT
TCAAGAAGATCCCAAGGCAGGCCCACGAAGAGAACCAAAAACGGCACTGG
AAATGGGGTCAGCAAGCAACCTCGTCGTTTGATAAAGTCCCCGGAGGGGC
ACAAGAAGAAGGAAGTTGGCAAGAAGAGTAACACAGCGGAGCCCATTATT
TACCTGTTCGCCCTTGTGTTTGTCTATCTGCTTCTGAAGGCCGCCTCGGA
CATCAACCAGCACTACAAGTCGAACAAAGGGGACAAGCGACTGCGCCGGT
GCTCGCTGCAATCTTATGCCCAGATCCACAAGCAGGATCGCCGGTCATCA
AAAGGTATTTCACCAAAATCTTTGCCAAAGTTTTAGCTCGCTGGGGGCCA
GGTGCCTAGCCTATTACACCGTGTTAACGAGGGATCAAGTGAATTGTTAT
CCTATAAATCTAAATGTATCTACCACTATGTACTGAACTAGCCAATCTTC
TCTACTCTAAAGCACCAGTTTTCTGACTTTTTCGGAAAATGTATTGTTGT
GTATTGTGTATCTCTCGTCTGTCCTCAATCTCTATACATCTATACATCTG
TACATCGCACTTTTCGGGCTCGATTATGCGTTTGATATCTGTGTTTTTGA
ACGACCTCCACTGTTTACCTCCTCTTCACCTATCTGTGAAACTGTACTGA
ATCCGAATATAAGGTTGTACATACTCGAATGTATATTACTGTCCTAAGTG
TACGTAATCCTAAAATAAATCAATTACTATGTGCTTTCCTGTGATCAATT
TACATACGTAGCCGTGTTAGCTTGCGTTTCATTTCCTCCGTTCGATTGGG
CTTTTACGCAATCCTCTGCGATCCTCTCTCACCCCGAATCCCAAACTGAC
CGCTCTACATTTCCCCAATGCATGCCAAAAGTGGATGAGTCCCCCATCTT
CCGGCGCAAGCATATAATCAGCGAGGAGCGTTCCGTATCTGTGGATCGCT
TCAAGTACACGCTAAACGATGAGGGAGGCTTCACCAGGTCCGTTCCGCTG
GTTCAGGAGTATCACTACAGGGTGGTATCTCCTTTGGCCAGCCGACCCAG
TCAGCAGCATCCGCATAAGCCGGGATCCGGAGAAGCCCGTTTCGAGCCTC
GTCTTAACCGTCGCTCCTCGGTTCCGATCAGCATTAACTATCAAACGGTG
CACGTATCGAGTCCACATCCTCCGGAAATGGCCAGGCGCGGCTCGGTGAT
AAGCCTCACTGGGCCACCACCAGAAGTCAGTGGTATGCCAAGTGGAGCCG
CTGATCCAAAGCGGCGCGTCCGCATGATAAATCGCCATTGAAGTCCAGAA
GTCCAGATGAGATCAGGACACAGCCCAACGAAATTGCAAAGAGACTACAG
TATTTTAACACACCATTCGGAAACAGAAACCGCACACGTTGTAGTCCTTC
TTAATGCGTTTCTTTTAATCAGTTAATTATGTTATATTATTCAAGTGTTT
TAAAAAAACGTACAAAGAATATTCTTCTCGAAGACACCGAATTTACGCCC
ACTTCGGCGGGCAGCCGTTTGCCGCAGCATTTTGCCATCCTATTGTACAT
TATTCTACTTAGGGCAAGATTAAAAAAATCTTAGGCTAGCGTAGTGTTTA
GTTTGGAATTCAGTACCTATGATATAACCATTATCTACGAACTAACTACG
AACTTGTGATGCTCATTACAATTACAATGACAATTACATACAGCTGGGTA
TGTATCTGGGTTGAAAGACCTGCTGGGCGAAGCGGATGAAGAGGGTGCAA
GATCTTAACTACGGTTGACGCGCTACTGGATCGGGGTGCGGAGTTATGGT
CGGAGTGGTTGGTCCCTACGGCTAATACACGTATTCTACAAGGCCTCCAT
CTTCATCGAATTTTGCGCTAGTTTCTCCTATTCCATTAAATATTAAAATA
AATTACGTATTTTAATTGCAAAAAAAAAAAAAAAAAAA

IP17978.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:25:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG34219-RA 1196 CG34219-RA 1..1196 1067..2262 5980 100 Plus
CG8248-RA 1473 CG8248-RA 373..1473 1..1098 5435 99.7 Plus
lin.b 3667 lin.b 3115..3667 2270..1718 2765 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:50:48
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 4806143..4807015 1444..572 4365 100 Minus
chr2R 21145070 chr2R 4805259..4806084 2269..1444 4130 100 Minus
chr2R 21145070 chr2R 4807075..4807646 572..1 2860 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:34:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:50:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8918592..8919464 1444..572 4365 100 Minus
2R 25286936 2R 8917707..8918533 2270..1444 4135 100 Minus
2R 25286936 2R 8919524..8920095 572..1 2860 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:42:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 8919791..8920663 1444..572 4365 100 Minus
2R 25260384 2R 8918906..8919732 2270..1444 4135 100 Minus
2R 25260384 2R 8920723..8921294 572..1 2860 100 Minus
Blast to na_te.dros performed 2019-03-16 10:50:46
Subject Length Description Subject Range Query Range Score Percent Strand
Tc3 1743 Tc3 TC3 1743bp 227..279 1818..1765 122 76.4 Minus

IP17978.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:51:53 Download gff for IP17978.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 4805259..4806083 1445..2269 97 <- Minus
chr2R 4806143..4807014 573..1444 100 <- Minus
chr2R 4807075..4807646 1..572 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:06:53 Download gff for IP17978.complete
Subject Subject Range Query Range Percent Splice Strand
CG8248-RA 1..684 6..686 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:38:19 Download gff for IP17978.complete
Subject Subject Range Query Range Percent Splice Strand
CG8248-RA 1..684 6..686 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:02:08 Download gff for IP17978.complete
Subject Subject Range Query Range Percent Splice Strand
CG8248-RB 1..681 6..686 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:17:41 Download gff for IP17978.complete
Subject Subject Range Query Range Percent Splice Strand
CG8248-RB 1..681 6..686 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-03-02 15:55:13 Download gff for IP17978.complete
Subject Subject Range Query Range Percent Splice Strand
CG34219-RA 1..1196 1067..2262 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:38:19 Download gff for IP17978.complete
Subject Subject Range Query Range Percent Splice Strand
CG34219-RA 1..1203 1067..2269 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:02:08 Download gff for IP17978.complete
Subject Subject Range Query Range Percent Splice Strand
CG34219-RA 1..1111 1159..2269 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:17:41 Download gff for IP17978.complete
Subject Subject Range Query Range Percent Splice Strand
CG34219-RA 1..1111 1159..2269 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:51:53 Download gff for IP17978.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8917708..8918532 1445..2269 100 <- Minus
2R 8918592..8919463 573..1444 100 <- Minus
2R 8919524..8920095 1..572 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:51:53 Download gff for IP17978.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8917708..8918532 1445..2269 100 <- Minus
2R 8918592..8919463 573..1444 100 <- Minus
2R 8919524..8920095 1..572 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:51:53 Download gff for IP17978.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8917708..8918532 1445..2269 100 <- Minus
2R 8918592..8919463 573..1444 100 <- Minus
2R 8919524..8920095 1..572 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:02:08 Download gff for IP17978.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4805213..4806037 1445..2269 100 <- Minus
arm_2R 4806097..4806968 573..1444 100 <- Minus
arm_2R 4807029..4807600 1..572 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:12:15 Download gff for IP17978.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8918907..8919731 1445..2269 100 <- Minus
2R 8919791..8920662 573..1444 100 <- Minus
2R 8920723..8921294 1..572 100   Minus

IP17978.pep Sequence

Translation from 2 to 685

> IP17978.pep
AMKSLAGDKFALSEEIGPPPCSPKHRKASAVSRDTDTNNHHVVPLGILVV
LCTVYLMVAGMQRNYRHYFKPGVAAFDLHHAQPEAMADAELDVAAPDASC
QRLDVFGKESNRNQAVSRRSQGRPTKRTKNGTGNGVSKQPRRLIKSPEGH
KKKEVGKKSNTAEPIIYLFALVFVYLLLKAASDINQHYKSNKGDKRLRRC
SLQSYAQIHKQDRRSSKGISPKSLPKF*

IP17978.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 11:14:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12991-PA 349 GF12991-PA 1..211 2..217 622 60.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 11:14:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10608-PA 232 GG10608-PA 1..232 2..227 969 83 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 11:14:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22685-PA 335 GH22685-PA 23..200 37..217 414 52.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:26:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG8248-PB 226 CG8248-PB 1..226 2..227 1176 100 Plus
CG8248-PA 227 CG8248-PA 1..227 2..227 1164 99.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 11:14:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20613-PA 174 GI20613-PA 1..174 57..227 374 51.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 11:14:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10406-PA 225 GL10406-PA 26..225 38..227 618 62.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 11:14:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20928-PB 355 GA20928-PB 1..219 2..217 562 53.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 11:14:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20653-PA 226 GM20653-PA 1..226 2..227 1069 90.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 11:14:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10127-PA 226 GD10127-PA 1..226 2..227 1100 92.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 11:14:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21053-PA 178 GJ21053-PA 1..178 57..227 357 48.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 11:14:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10753-PA 322 GK10753-PA 1..197 2..217 441 48.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 11:14:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22711-PA 231 GE22711-PA 1..231 2..227 879 77.9 Plus

IP17978.hyp Sequence

Translation from 2 to 685

> IP17978.hyp
AMKSLAGDKFALSEEIGPPPCSPKHRKASAVSRDTDTNNHHVVPLGILVV
LCTVYLMVAGMQRNYRHYFKPGVAAFDLHHAQPEAMADAELDVAAPDASC
QRLDVFGKESNRNQAVSRRSQGRPTKRTKNGTGNGVSKQPRRLIKSPEGH
KKKEVGKKSNTAEPIIYLFALVFVYLLLKAASDINQHYKSNKGDKRLRRC
SLQSYAQIHKQDRRSSKGISPKSLPKF*

IP17978.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:49:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG8248-PB 226 CG8248-PB 1..226 2..227 1176 100 Plus
CG8248-PA 227 CG8248-PA 1..227 2..227 1164 99.6 Plus