Clone IP18706 Report

Search the DGRC for IP18706

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:187
Well:6
Vector:pOT2
Associated Gene/TranscriptCG15537-RB
Protein status:IP18706.pep: gold
Sequenced Size:1489

Clone Sequence Records

IP18706.complete Sequence

1489 bp assembled on 2011-05-12

GenBank Submission: BT128696.1

> IP18706.complete
CGAGCGGCAGCGTAGACGCATCGTCCTTGTTTTCGTCCTGCAACGGTTTC
TTGGTTTCTTTTTCCCTGTGAAACAAAAACGCTTTCCCCGGCGCAATTTC
AAACCCGCATCAAGTATACGCATCGTGTGCCCAGTAAGCATCGCGTGCCT
CCGTCGCTAATTCCACGCTCTAATGAAGTTATTGGGTGCGTGATTCCTGG
TCTAATCTCATAGCTCCGGTCAGGCCAAAGGATCAAAAGAAGGCGCACCG
GAACTCGAGGGTTAATTGAAAAGTCGCCTCAAACTTTGTCAACTGATTTT
CAATCTCCCCGCGGGGATTGGCCATTTTCTCCTTAGGTTTCGCCAATCGA
AAATCGCGATGAAGTTGGTTGTCTATCTCTATTTCTCCATGATTGTGCTG
GGCGTCCAGGCCTGGCCCAGTGTAAAGCGGTCCTTTGAGCTTTTCCCCAA
CCCTGCGATGCCGCACAATGTGCACACGGTCTCAGATTGCATGCATGTGG
CCTCCGAGGCAGGTGACTACATCTTCAAGAAGCTCAACCCACTCAACTCG
GCCCTCAACCGGGAGGCCGCCCTGCTCGAACTGGAGGTGGCAGGAGCTGC
GGCAGTGGGTGTTGTTCCGGGGGAGGGCGCAGCGGCAGGGGCAGGAGCAG
GAGCTGGAACGGCAGCAGATGTCCAGGAACTGCAGCCGGAGGTATGTGGG
CTTTATGTGATTGGGGAGCCAGACACGATTGTGGAGATTACAATGAAGCA
CTACGATGCGAACTGCGAGACAGGAGCCCTAATGGCGTTTGTCGACGGCT
GGGAGCTGAATGGCGAGTACTTTCCGGGCATTAAGGATCACCATCGACCG
CTGGAGGAGCGCGTTTACGAGTTCTGCAACAACTACAGACAATGGCCCCG
AGTTAGTAACAAGAAGTTCTTCCGCTCGAGCCAGAATGCCGCCTTGCTCC
AATACCGAATTCCCGTTCGAGGCTCCTTTGTGGCCAATGTGCGGTTCCAC
AAGATCACGCAACCCTGTAACGTTTTGGTCCAGGACACGGCCGCCATGTA
CAAGATGACCAACTTTGGGCAGGCTCGCAACTGCACCATCTCGGCGCTCT
TTCCGGCTGTGGTCTCGCTGGCCAGTTTGCGGATTGGCGGCAAGAGTGTG
CGGGCCCAGCCGAAAGTCAACTACGATTGTCAATTGCCCAGCGATCGCTT
AGAAATCGGTGGAGCCGCCGGTCTGGATGCCATTGGAATGGAGCAGGCCA
GTGCCGTGTGCGGTGCCTCCAGTGACTTGGGTCCCGAGCAGGCCATCTTT
TGCGGCGTGAGCACCGTGCGGCTGGTGTCCTCCGGTCGCTATCAGAACCA
GGCGGCCATTGTCCTGCGCAAGGCGGATGTGCCGGACATGGAGATCGCCA
CGCTCATCTGTGCGCTCTAAGTTAGCTTGGCGAGGTGGGACGCTGTCCAA
AAATGTACATGTTTGTAAAAAAAAAAAAAAAAAAAAAAA

IP18706.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 10:36:33
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 26265737..26266145 410..1 2000 99.8 Minus
chr3R 27901430 chr3R 26258773..26259079 787..481 1505 99.3 Minus
chr3R 27901430 chr3R 26257864..26258152 1466..1178 1415 99.3 Minus
chr3R 27901430 chr3R 26258210..26258373 1177..1014 760 97.6 Minus
chr3R 27901430 chr3R 26258435..26258554 1013..894 600 100 Minus
chr3R 27901430 chr3R 26258607..26258715 895..787 545 100 Minus
chr3R 27901430 chr3R 26260852..26260930 485..407 395 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 10:36:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30443190..30443599 410..1 2050 100 Minus
3R 32079331 3R 30436218..30436524 787..481 1535 100 Minus
3R 32079331 3R 30435302..30435599 1475..1178 1490 100 Minus
3R 32079331 3R 30435657..30435820 1177..1014 820 100 Minus
3R 32079331 3R 30435882..30436001 1013..894 600 100 Minus
3R 32079331 3R 30436052..30436160 895..787 545 100 Minus
3R 32079331 3R 30438301..30438379 485..407 395 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:11:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 30184021..30184430 410..1 2050 100 Minus
3R 31820162 3R 30177049..30177355 787..481 1535 100 Minus
3R 31820162 3R 30176133..30176430 1475..1178 1490 100 Minus
3R 31820162 3R 30176488..30176651 1177..1014 820 100 Minus
3R 31820162 3R 30176713..30176832 1013..894 600 100 Minus
3R 31820162 3R 30176883..30176991 895..787 545 100 Minus
3R 31820162 3R 30179132..30179210 485..407 395 100 Minus
Blast to na_te.dros performed on 2019-03-15 10:36:31 has no hits.

IP18706.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 10:37:25 Download gff for IP18706.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 26258210..26258373 1014..1177 97 <- Minus
chr3R 26258435..26258553 895..1013 100 <- Minus
chr3R 26258608..26258714 788..894 100 <- Minus
chr3R 26257864..26258152 1178..1466 99 <- Minus
chr3R 26258773..26259074 486..787 99 <- Minus
chr3R 26260852..26260927 410..485 100 <- Minus
chr3R 26265738..26266145 1..409 99   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-05-19 09:25:22 Download gff for IP18706.complete
Subject Subject Range Query Range Percent Splice Strand
CG15537-RB 1..1062 359..1420 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:21:34 Download gff for IP18706.complete
Subject Subject Range Query Range Percent Splice Strand
CG15537-RB 1..1062 359..1420 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:08:15 Download gff for IP18706.complete
Subject Subject Range Query Range Percent Splice Strand
CG15537-RB 1..1062 359..1420 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-05-19 09:25:22 Download gff for IP18706.complete
Subject Subject Range Query Range Percent Splice Strand
CG15537-RB 1..1062 359..1420 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:21:34 Download gff for IP18706.complete
Subject Subject Range Query Range Percent Splice Strand
CG15537-RB 1..1466 1..1466 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:08:15 Download gff for IP18706.complete
Subject Subject Range Query Range Percent Splice Strand
CG15537-RB 1..1466 1..1466 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:37:25 Download gff for IP18706.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30435311..30435599 1178..1466 100 <- Minus
3R 30435657..30435820 1014..1177 100 <- Minus
3R 30435882..30436000 895..1013 100 <- Minus
3R 30436053..30436159 788..894 100 <- Minus
3R 30436218..30436519 486..787 100 <- Minus
3R 30438301..30438376 410..485 100 <- Minus
3R 30443191..30443599 1..409 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:37:25 Download gff for IP18706.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30435311..30435599 1178..1466 100 <- Minus
3R 30435657..30435820 1014..1177 100 <- Minus
3R 30435882..30436000 895..1013 100 <- Minus
3R 30436053..30436159 788..894 100 <- Minus
3R 30436218..30436519 486..787 100 <- Minus
3R 30438301..30438376 410..485 100 <- Minus
3R 30443191..30443599 1..409 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:37:25 Download gff for IP18706.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30435311..30435599 1178..1466 100 <- Minus
3R 30435657..30435820 1014..1177 100 <- Minus
3R 30435882..30436000 895..1013 100 <- Minus
3R 30436053..30436159 788..894 100 <- Minus
3R 30436218..30436519 486..787 100 <- Minus
3R 30438301..30438376 410..485 100 <- Minus
3R 30443191..30443599 1..409 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:21:34 Download gff for IP18706.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26261604..26261722 895..1013 100 <- Minus
arm_3R 26261775..26261881 788..894 100 <- Minus
arm_3R 26261940..26262241 486..787 100 <- Minus
arm_3R 26264023..26264098 410..485 100 <- Minus
arm_3R 26261379..26261542 1014..1177 100 <- Minus
arm_3R 26261033..26261321 1178..1466 100 <- Minus
arm_3R 26268913..26269321 1..409 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:07:00 Download gff for IP18706.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30176142..30176430 1178..1466 100 <- Minus
3R 30176488..30176651 1014..1177 100 <- Minus
3R 30176713..30176831 895..1013 100 <- Minus
3R 30176884..30176990 788..894 100 <- Minus
3R 30177049..30177350 486..787 100 <- Minus
3R 30179132..30179207 410..485 100 <- Minus
3R 30184022..30184430 1..409 100   Minus

IP18706.pep Sequence

Translation from 358 to 1419

> IP18706.pep
MKLVVYLYFSMIVLGVQAWPSVKRSFELFPNPAMPHNVHTVSDCMHVASE
AGDYIFKKLNPLNSALNREAALLELEVAGAAAVGVVPGEGAAAGAGAGAG
TAADVQELQPEVCGLYVIGEPDTIVEITMKHYDANCETGALMAFVDGWEL
NGEYFPGIKDHHRPLEERVYEFCNNYRQWPRVSNKKFFRSSQNAALLQYR
IPVRGSFVANVRFHKITQPCNVLVQDTAAMYKMTNFGQARNCTISALFPA
VVSLASLRIGGKSVRAQPKVNYDCQLPSDRLEIGGAAGLDAIGMEQASAV
CGASSDLGPEQAIFCGVSTVRLVSSGRYQNQAAIVLRKADVPDMEIATLI
CAL*

IP18706.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 18:51:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23339-PA 351 GF23339-PA 1..351 1..353 1538 85.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 18:51:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11937-PA 353 GG11937-PA 1..353 1..353 1709 93.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 18:51:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17433-PA 348 GH17433-PA 1..348 1..353 1358 72.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:53:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG15537-PC 353 CG15537-PC 1..353 1..353 1833 100 Plus
CG15537-PB 353 CG15537-PB 1..353 1..353 1833 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 18:51:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22762-PA 344 GI22762-PA 1..344 1..353 1368 71.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 18:51:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14049-PA 397 GL14049-PA 71..397 17..353 1465 82.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 18:51:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13795-PA 345 GA13795-PA 1..345 1..353 1487 83 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 18:52:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12156-PA 353 GM12156-PA 1..353 1..353 1852 97.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 18:52:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17090-PA 353 GD17090-PA 1..353 1..353 1856 98 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 18:52:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22763-PA 335 GJ22763-PA 1..335 1..353 1361 71.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 18:52:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13130-PA 353 GK13130-PA 1..353 1..353 1424 77.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 18:52:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23389-PA 358 GE23389-PA 1..358 1..353 1829 95.8 Plus

IP18706.hyp Sequence

Translation from 358 to 1419

> IP18706.hyp
MKLVVYLYFSMIVLGVQAWPSVKRSFELFPNPAMPHNVHTVSDCMHVASE
AGDYIFKKLNPLNSALNREAALLELEVAGAAAVGVVPGEGAAAGAGAGAG
TAADVQELQPEVCGLYVIGEPDTIVEITMKHYDANCETGALMAFVDGWEL
NGEYFPGIKDHHRPLEERVYEFCNNYRQWPRVSNKKFFRSSQNAALLQYR
IPVRGSFVANVRFHKITQPCNVLVQDTAAMYKMTNFGQARNCTISALFPA
VVSLASLRIGGKSVRAQPKVNYDCQLPSDRLEIGGAAGLDAIGMEQASAV
CGASSDLGPEQAIFCGVSTVRLVSSGRYQNQAAIVLRKADVPDMEIATLI
CAL*

IP18706.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:22:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG15537-PC 353 CG15537-PC 1..353 1..353 1833 100 Plus
CG15537-PB 353 CG15537-PB 1..353 1..353 1833 100 Plus