Clone IP18729 Report

Search the DGRC for IP18729

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:187
Well:29
Vector:pOT2
Associated Gene/TranscriptCG43740-RB
Protein status:IP18729.pep: gold
Sequenced Size:1848

Clone Sequence Records

IP18729.complete Sequence

1848 bp assembled on 2009-04-30

GenBank Submission: BT082105.1

> IP18729.complete
CCGACGCGAGTGGCAGGATAGAGCGGCTAAAAAAAAAAAAAAACAAAAAG
GACAAGCGGCTACCAAAAAGGACGAAACAACCCAGGATTTACGGAGCGAA
TGCGAGACCATCTAATGCTCATTGAAATTTACGATTATGCTGCGAAATTA
TTAAACAATATGACCGCCAGAGGAGTCAGGAATTCAGTGGGAAAATCAGC
CGAGAGCCGTACTAAGGAATCAACAGGGAAATTGGGCAGCCTGCTTGGCC
GCACACTGGCCAAAGTGGCCAAAGTGGCCCGCTCCAATCCCGCCCAGCAC
GTGACCAATCTGCCCGTTTCCGCACTCCTGCTCCAGGCCCTCGACGTGGC
GGACGTGGCCCGCGGACAGGGAATCGATTATCCCATCACTAGCACCACCG
GGACCACCTTCAACATTATCACCACCACCACCACCACCACCACCACCACC
ACGGGCAGTGACCCAACGGATGTGCTCGGCAGTCAGCCGCCGGCGTTCTC
ATTTCCCGCCAACGTCACTGGAGCACCGGGAAGTGCGGGGAATGCGAACG
CATACCTGCCCGCGGGCAATCTCAGCGGTTTCATCGAATCCTCAACAACG
GCGGTGATGAGCACACTGCCCATACCCACCAGCACCATGGCCACGCTCCA
GGCCCAAACGGTGGCCACTTTCATCGCCGCCACCGGCAGCAAGAATCGCC
CAACGACCATCGTTGTCTACCCAACGGTTTCACCCGAATCGATTGTCATC
CCGATCGTCTCCTGTATCTTCGGCTTCCCCATCCTGGCGCTTCTGGTGAT
CTGTTGCCTTCGAAGGAGGGCCAAGTTGGCCAGGGAGAGGGATAGGAGGC
GTAACTACGATATGCAGGACCATGCCGTCAGCCTGATTACCGATCGTCGC
GAGCTATCAGTCTACGTCCTGAACGAAGCCTAAGCCAGGGCTTCACCTCT
CTGGAGCTGGACACTGTGCTGGAGGAGCGCTGCAGCGACGTGGAGCAAAC
GCAGACGGAGATGTTCAACGCGGAGTCACCGATGGACACCACCTCCTACA
AGATGTCCTTCTCTTCGAGCTAACAGTTAGCCAAACAGCAGCAACTGGAG
CAGGCATCGCCCCAGGTCGAGATCCGAGATGGCCAAGCAGATGGCCAGGA
GCCGGGTATGAAGATTCCGCCGGCCAGGTCGCCGTCACAGTTGGCTCCAC
CGGCACAGCTGCGCAAGACGGCCAGTGTGCGCGATGATCCAGCTGGTCTG
GCCAAGCGACGGAGTCGCCTCCAGGAGATCCGGGCTGCCAGCAGTAGTGC
GGGTGGTGTGGTGGTGGCGGCGAGGCAGCTGCCGCCTTCACCAAGCGGGA
ATCCAAGCGGGATCGTCGACGTGGAGGAGGAGGAGGAGCAGGAGCAGCAG
CAGCAGCAGCAGCAGGAAGTGGTAGCAGCGGCAGTGGATCCCAGTCGCCC
ACCATGCGCAAATCGCATTCCCTGGACGCCGCCGAGAGCTACACGTTGGC
CAGCATCCAGGCGCCGCTCTGGGTGACCCTCACCAATGCTCGCACCATCG
ACGAGCTGGCCCAGCAAAAGATGTGAACTCCTCCAGTTGCAGCTGCATCT
GCATCTTCATCAAATTCGTTCAGTTATCAAAACCTCCGACAGTGTCTACA
GAGCCCCGCCCACTTAGAAATCGTGTAAATGTTTAGATGAATTTCGAATT
AGTCACATTAACGACACAAACGAGCTACTTGCATCAATAACTAAAGCTAA
ATCAATTTAATGAAGTTAAAGACCAAACAGAAATAGTAAAACGAAGCTAA
TAATAAAATGTAAAAAATTTAAATTCACCTAAAAAAAAAAAAAAAAAA

IP18729.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:25:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG12641-RA 1390 CG12641-RA 444..1390 885..1830 4695 99.8 Plus
CG15307-RA 942 CG15307-RA 1..726 160..885 3630 100 Plus
CG15307-RA 942 CG15307-RA 755..942 886..1073 940 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:19:35
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 10238345..10239291 885..1830 4685 99.9 Plus
chrX 22417052 chrX 10227300..10227930 82..727 2970 97.7 Plus
chrX 22417052 chrX 10235356..10235514 727..885 795 100 Plus
chrX 22417052 chrX 10225157..10225237 1..81 405 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:37:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:19:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10346848..10347798 885..1834 4705 99.9 Plus
X 23542271 X 10335806..10336451 82..727 3230 100 Plus
X 23542271 X 10343870..10344028 727..885 795 100 Plus
X 23542271 X 10333671..10333751 1..81 405 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:19:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 10354946..10355896 885..1834 4715 99.8 Plus
X 23527363 X 10343904..10344549 82..727 3230 100 Plus
X 23527363 X 10351968..10352126 727..885 795 100 Plus
X 23527363 X 10341769..10341849 1..81 405 100 Plus
Blast to na_te.dros performed 2019-03-15 23:19:34
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy11 4428 gypsy11 GYPSY11 4428bp 1545..1642 1716..1817 130 65.4 Plus
Tabor 7345 Tabor TABOR 7345bp 2253..2344 39..130 126 62.4 Plus
TART-A 13424 TART-A 13424bp 13101..13200 1729..1826 115 63.7 Plus

IP18729.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:20:37 Download gff for IP18729.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 10225157..10225237 1..81 100 -> Plus
chrX 10227300..10227600 82..382 100 == Plus
chrX 10227656..10227930 453..727 100 -> Plus
chrX 10235357..10235514 728..885 100 -> Plus
chrX 10238346..10239257 886..1796 94 <- Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:56:36 Download gff for IP18729.complete
Subject Subject Range Query Range Percent Splice Strand
CG15307-RA 1..721 160..880 100 -> Plus
CG15307-RA 750..942 881..1073 98   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:50:07 Download gff for IP18729.complete
Subject Subject Range Query Range Percent Splice Strand
CG15307-RA 1..721 160..880 100 -> Plus
CG15307-RA 750..942 881..1073 98   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:37:56 Download gff for IP18729.complete
Subject Subject Range Query Range Percent Splice Strand
CG43740-RB 1..819 115..933 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:29:06 Download gff for IP18729.complete
Subject Subject Range Query Range Percent Splice Strand
CG43740-RB 1..819 115..933 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:56:35 Download gff for IP18729.complete
Subject Subject Range Query Range Percent Splice Strand
CG15307-RA 1..721 160..880 100 -> Plus
CG15307-RA 750..942 881..1073 98   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:50:07 Download gff for IP18729.complete
Subject Subject Range Query Range Percent Splice Strand
CG12641-RA 438..1390 878..1830 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:37:56 Download gff for IP18729.complete
Subject Subject Range Query Range Percent Splice Strand
CG43740-RB 20..1850 1..1830 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:29:06 Download gff for IP18729.complete
Subject Subject Range Query Range Percent Splice Strand
CG43740-RB 20..1850 1..1830 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:20:37 Download gff for IP18729.complete
Subject Subject Range Query Range Percent Splice Strand
X 10333671..10333751 1..81 100 -> Plus
X 10335806..10336451 82..727 100 -> Plus
X 10343871..10344028 728..885 100 -> Plus
X 10346849..10347794 886..1830 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:20:37 Download gff for IP18729.complete
Subject Subject Range Query Range Percent Splice Strand
X 10333671..10333751 1..81 100 -> Plus
X 10335806..10336451 82..727 100 -> Plus
X 10343871..10344028 728..885 100 -> Plus
X 10346849..10347794 886..1830 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:20:37 Download gff for IP18729.complete
Subject Subject Range Query Range Percent Splice Strand
X 10333671..10333751 1..81 100 -> Plus
X 10335806..10336451 82..727 100 -> Plus
X 10343871..10344028 728..885 100 -> Plus
X 10346849..10347794 886..1830 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:37:56 Download gff for IP18729.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10227704..10227784 1..81 100 -> Plus
arm_X 10229839..10230484 82..727 100 -> Plus
arm_X 10237904..10238061 728..885 100 -> Plus
arm_X 10240882..10241827 886..1830 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:41:02 Download gff for IP18729.complete
Subject Subject Range Query Range Percent Splice Strand
X 10343904..10344549 82..727 100 -> Plus
X 10351969..10352126 728..885 100 -> Plus
X 10354947..10355892 886..1830 99   Plus
X 10341769..10341849 1..81 100 -> Plus

IP18729.pep Sequence

Translation from 99 to 932

> IP18729.pep
MRDHLMLIEIYDYAAKLLNNMTARGVRNSVGKSAESRTKESTGKLGSLLG
RTLAKVAKVARSNPAQHVTNLPVSALLLQALDVADVARGQGIDYPITSTT
GTTFNIITTTTTTTTTTTGSDPTDVLGSQPPAFSFPANVTGAPGSAGNAN
AYLPAGNLSGFIESSTTAVMSTLPIPTSTMATLQAQTVATFIAATGSKNR
PTTIVVYPTVSPESIVIPIVSCIFGFPILALLVICCLRRRAKLARERDRR
RNYDMQDHAVSLITDRRELSVYVLNEA*

IP18729.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:57:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19333-PA 366 GF19333-PA 57..296 39..263 543 55.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:57:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18352-PA 222 GG18352-PA 1..188 21..209 666 78.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:57:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12013-PA 278 GH12013-PA 1..207 45..263 427 50.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:10:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG43740-PB 272 CG43740-PB 1..272 6..277 1355 100 Plus
CG43740-PA 328 CG43740-PA 1..258 6..263 1286 99.6 Plus
CG43740-PC 496 CG43740-PC 1..258 6..263 1286 99.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:57:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15193-PA 313 GI15193-PA 134..243 160..263 412 73 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:57:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26844-PA 516 GL26844-PA 76..347 39..263 378 39.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:57:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22632-PA 504 GA22632-PA 70..282 39..263 544 54.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:57:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11418-PA 205 GM11418-PA 1..191 21..209 710 84.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:57:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24701-PA 144 GD24701-PA 36..130 119..209 413 89.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:57:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14800-PA 312 GJ14800-PA 123..242 150..263 420 70.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:57:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25653-PA 293 GK25653-PA 137..222 177..263 407 88.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:57:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17841-PA 478 GE17841-PA 1..270 21..263 885 74.1 Plus

IP18729.hyp Sequence

Translation from 99 to 932

> IP18729.hyp
MRDHLMLIEIYDYAAKLLNNMTARGVRNSVGKSAESRTKESTGKLGSLLG
RTLAKVAKVARSNPAQHVTNLPVSALLLQALDVADVARGQGIDYPITSTT
GTTFNIITTTTTTTTTTTGSDPTDVLGSQPPAFSFPANVTGAPGSAGNAN
AYLPAGNLSGFIESSTTAVMSTLPIPTSTMATLQAQTVATFIAATGSKNR
PTTIVVYPTVSPESIVIPIVSCIFGFPILALLVICCLRRRAKLARERDRR
RNYDMQDHAVSLITDRRELSVYVLNEA*

IP18729.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:49:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG43740-PB 272 CG43740-PB 1..272 6..277 1355 100 Plus
CG43740-PA 328 CG43740-PA 1..258 6..263 1286 99.6 Plus
CG43740-PC 496 CG43740-PC 1..258 6..263 1286 99.6 Plus