Clone IP18912 Report

Search the DGRC for IP18912

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:189
Well:12
Vector:pOTB7_DraIII
Associated Gene/TranscriptCG43074-RA
Protein status:IP18912.pep: gold
Sequenced Size:710

Clone Sequence Records

IP18912.complete Sequence

710 bp assembled on 2011-03-11

GenBank Submission: BT126406.1

> IP18912.complete
ATTGTAAAGTGGTTACAGTGGTCACAATACGACATGGTTTGGATTTGGAG
CCTAATTGCACTCGGAATAGTTGTTGGCGCAACGGGGGAGAATGGGAGTA
AACCGAATACCACCGAACCGACAACGACGGCGCCATCCTCACGAACTCCT
GAAACAACTACTGTGAGTCCCTACACTGCACTCGATAAGACAATAACCGA
TGATCTTCAGAATATTCTAACCACATATGAGCGTGAATGCATTGGTAATT
CTGAGTTCACACGTAATCTTGACCTCATACGCATCGCGGTAAAATGGGAC
CAGGGTCGTTTGAGAGAAAAGATAGAAGCACGAAGAGACTTTGATGTGTA
CAATGAACAACGCATTTTAATTGAACGACAAATTGATGAGCGCATAGAGG
CCCTCAATAATATCCTGCCTACCCAGGAACCGAATAGTTATTGCTCAGAA
TTTTACTTGAAGCAAAGAGAAGCTCTTAGGAATGCTAAATCACTTTCGAA
TCAAGATAAATCAAACACTTTAATAATTAACAAAGCAATTTGCACTATCA
ATGATAATTATAATGATTATTTTCTTTACTAATCAGCAATCAGTCTAAGT
GAAAAAAATCTGAAATGTATTTACTTATATTTATAACTCAAACCTAATGA
TTCAAATATATATATGATACTTGTGAGAATAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAA

IP18912.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:31:42
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 3483251..3483801 679..129 2680 99.1 Minus
chr3L 24539361 chr3L 3483989..3484073 85..1 425 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:31:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3483830..3484380 679..129 2755 100 Minus
3L 28110227 3L 3484569..3484653 85..1 425 100 Minus
3L 28110227 3L 3484457..3484503 130..84 235 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:08:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 3483830..3484380 679..129 2755 100 Minus
3L 28103327 3L 3484569..3484653 85..1 425 100 Minus
3L 28103327 3L 3484457..3484503 130..84 235 100 Minus
Blast to na_te.dros performed 2019-03-16 22:31:41
Subject Length Description Subject Range Query Range Score Percent Strand
blood 7410 blood BLOOD 7410bp 5562..5677 448..562 127 61.3 Plus

IP18912.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:32:24 Download gff for IP18912.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 3483250..3483800 130..680 98 <- Minus
chr3L 3483879..3483922 85..129 93 <- Minus
chr3L 3483990..3484073 1..84 100   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-22 17:53:08 Download gff for IP18912.complete
Subject Subject Range Query Range Percent Splice Strand
CG43074-RA 1..549 34..582 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:57:10 Download gff for IP18912.complete
Subject Subject Range Query Range Percent Splice Strand
CG43074-RA 1..549 34..582 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:29:23 Download gff for IP18912.complete
Subject Subject Range Query Range Percent Splice Strand
CG43074-RA 1..549 34..582 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-22 17:53:07 Download gff for IP18912.complete
Subject Subject Range Query Range Percent Splice Strand
CG43074-RA 1..549 34..582 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:57:10 Download gff for IP18912.complete
Subject Subject Range Query Range Percent Splice Strand
CG43074-RA 1..677 1..677 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:23 Download gff for IP18912.complete
Subject Subject Range Query Range Percent Splice Strand
CG43074-RA 1..677 1..677 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:32:24 Download gff for IP18912.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3483829..3484379 130..680 99 <- Minus
3L 3484458..3484502 85..129 100 <- Minus
3L 3484570..3484653 1..84 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:32:24 Download gff for IP18912.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3483829..3484379 130..680 99 <- Minus
3L 3484458..3484502 85..129 100 <- Minus
3L 3484570..3484653 1..84 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:32:24 Download gff for IP18912.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3483829..3484379 130..680 99 <- Minus
3L 3484458..3484502 85..129 100 <- Minus
3L 3484570..3484653 1..84 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:57:10 Download gff for IP18912.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3483829..3484379 130..680 99 <- Minus
arm_3L 3484458..3484502 85..129 100 <- Minus
arm_3L 3484570..3484653 1..84 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:01:11 Download gff for IP18912.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3483829..3484379 130..680 99 <- Minus
3L 3484458..3484502 85..129 100 <- Minus
3L 3484570..3484653 1..84 100   Minus

IP18912.hyp Sequence

Translation from 0 to 581

> IP18912.hyp
IVKWLQWSQYDMVWIWSLIALGIVVGATGENGSKPNTTEPTTTAPSSRTP
ETTTVSPYTALDKTITDDLQNILTTYERECIGNSEFTRNLDLIRIAVKWD
QGRLREKIEARRDFDVYNEQRILIERQIDERIEALNNILPTQEPNSYCSE
FYLKQREALRNAKSLSNQDKSNTLIINKAICTINDNYNDYFLY*

IP18912.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:10:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG43074-PA 182 CG43074-PA 1..182 12..193 946 100 Plus
CG43090-PA 169 CG43090-PA 1..144 12..181 195 30.6 Plus
CG17472-PA 159 CG17472-PA 21..157 58..192 166 29.5 Plus

IP18912.pep Sequence

Translation from 0 to 581

> IP18912.pep
IVKWLQWSQYDMVWIWSLIALGIVVGATGENGSKPNTTEPTTTAPSSRTP
ETTTVSPYTALDKTITDDLQNILTTYERECIGNSEFTRNLDLIRIAVKWD
QGRLREKIEARRDFDVYNEQRILIERQIDERIEALNNILPTQEPNSYCSE
FYLKQREALRNAKSLSNQDKSNTLIINKAICTINDNYNDYFLY*

IP18912.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 18:32:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21961-PA 172 GF21961-PA 12..150 50..189 274 43.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 18:32:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21241-PA 160 GG21241-PA 21..158 58..193 151 30 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:37:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG43074-PA 182 CG43074-PA 1..182 12..193 946 100 Plus
CG43090-PA 169 CG43090-PA 1..144 12..181 195 30.6 Plus
CG17472-PA 159 CG17472-PA 21..157 58..192 166 29.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 18:32:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26166-PA 181 GL26166-PA 1..163 12..181 234 37.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 18:32:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14521-PA 167 GA14521-PA 19..149 51..181 191 37.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 18:32:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23356-PA 159 GM23356-PA 21..142 58..181 148 31.5 Plus
Dsec\GM23355-PA 160 GM23355-PA 22..143 58..181 144 31.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 18:32:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24269-PA 159 GD24269-PA 21..142 58..181 148 31.5 Plus
Dsim\GD24265-PA 159 GD24265-PA 21..142 58..181 137 29.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 18:32:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15344-PA 121 GK15344-PA 6..110 79..182 169 36.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 18:32:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13314-PA 163 GE13314-PA 17..142 54..181 159 31.8 Plus