Clone IP19406 Report

Search the DGRC for IP19406

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:194
Well:6
Vector:pOTB7_DraIII
Associated Gene/TranscriptCG13084-RA
Protein status:IP19406.pep: gold
Sequenced Size:1554

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13084 2008-04-29 Release 5.5 accounting
CG13084 2008-04-29 Picked prior to 5.5
CG13084 2008-05-05 Release 5.5 slip selected
CG13084 2008-08-15 Release 5.9 accounting
CG13084 2008-12-18 5.12 accounting

Clone Sequence Records

IP19406.complete Sequence

1554 bp assembled on 2007-12-05

GenBank Submission: BT031320

> IP19406.complete
ACTTGCAATTGGTGTTTCCAGTCGAAAACAACTTGCAGTTGAAATGAAAG
TACTGATCACGTTCTTCTTTCTGGGCGCCTGCCTCTGCGGCATCCAAGCG
GATGAGAGCATCGCTGACCTCTTGAAGGACAATGCGAAGGGCGTACAGGC
AGCCAATGTGCTCCTGACCCGGATTGCCCAAGTAAGCGAGCAGACTCAGG
TCGGTTTGGCAGAGCAAAAGGAGGCACTGAAGGCCCTGACGCTCGTGGAG
AAGCTGCTAGCCAAGTTGACTGTCGTTCTGGAGGTTGGCTCCCACAATCT
GGTGGCCACCCTTGAGAACCTCTCTAGGCAGGGCGAGGAATACGGCAATC
GAACGGAGTCAGAGCTCCTGGAATTGGTGCGTCTGCAGGAGGGCACCAAG
GAGATACTCAATGTCCTGGAGGCCAAGCTGGATGCCTATCAGAGGCACGT
GCTCCATAGTTCCCGCAACATTGACAACAGCATCGACGGACTGGCCAAAC
TTATTACTAGGACGGTGTTGCCACAATTGAATGGGCTAAAGTGTACCTTC
GATAGCTTGGAGACGTCCCAAATCAACGTGGAGGTGGAGCTGAAGAACTT
GGCCGGAGTCAAGGAGCTCAGCGAGAACTCCAACTTCAAGCTGAACGTGC
TGGAGCATCAATTGAAGCAGCTGAATCGCACTCAGGAGCAGCGCTTGGAC
ATCCTAATCGATGCAGTCAAGCATTTGCAGCCCCACAGTTCCTGGAAAGT
GGAGGCTGTTCTCCGCGAACTGATCATCTCGCAGAAACGCATCGAACTGG
GTCTGGAAGAGTGCAGCCGACAACAGCCCTATCCGCAATATGGCCATCAC
GACGAGTCCTATCTTCCCACCTACGGAGCTGAGGTCCCAGAGCCGCAGCA
TGCTCATCCTAAGCCCAAGCAAGTGGATCTGGAACAGGTGTGGAGCATCA
AGGAGGAGCCTAAGCACGGAGAGCACTCTGGAAACCACAAAGCTACCGCC
TATGCCCAGTCCCCCGAGCCAAAGAAGAACTATCAGAGCTCCAGCGCCGT
GTCCTGGCGGCAGACGGTGCCGTGGGAGTACGGATCCCCATACCAGTCCG
CTCCAGTTCACCACCATCAGCCATGGAACCCAGCTCCGGCCCACGTTCCC
ACCTCCGTTACCAAGCCCAAGCCGTGCCCCAAGAAAGAGCACCCTACTCC
GGCATCCTATGTTCCTTTGCCACATGACCAGCCTGAATCCTACAAGCTTC
CTGTGGATTACAGTCCCAAACCTAACCACGAGCAACCTCATAAGCCCCAC
CACGAGCCACAGTCTTACAATGAGGAGATCTACAAGCCACAGCCCATCCA
GCCAGGAGAATCCTTCAGGATTTGGTATGGAGACAGTTCCCTCCCCCAAG
GATACTAAAGGAAGATTTAACTGGGACTACCACTGTTACTGAAACTGATA
CAACTTTTCAAAGCATTTAACAAACTCTTTTTTTTTAATTCAGATTCATT
ACTTTGTACAATTTTTATGTTTTAGAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA

IP19406.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:33:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG13084-RA 1562 CG13084-RA 1..1542 1..1542 7650 99.7 Plus
CG13084.a 1719 CG13084.a 196..1719 1..1524 7605 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:27:03
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 19483472..19484440 1..969 4815 99.8 Plus
chr2L 23010047 chr2L 19484498..19485054 968..1524 2755 99.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:38:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:27:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19484930..19485898 1..969 4830 99.9 Plus
2L 23513712 2L 19485956..19486530 968..1542 2830 99.5 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:30:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19484930..19485898 1..969 4830 99.8 Plus
2L 23513712 2L 19485956..19486530 968..1542 2830 99.4 Plus
Blast to na_te.dros performed on 2019-03-15 23:27:02 has no hits.

IP19406.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:28:03 Download gff for IP19406.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 19483472..19484439 1..968 99 -> Plus
chr2L 19484499..19485035 969..1505 99 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:14:42 Download gff for IP19406.complete
Subject Subject Range Query Range Percent Splice Strand
CG13084-RA 1..1365 44..1408 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:03:04 Download gff for IP19406.complete
Subject Subject Range Query Range Percent Splice Strand
CG13084-RA 1..1365 44..1408 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:49:49 Download gff for IP19406.complete
Subject Subject Range Query Range Percent Splice Strand
CG13084-RA 1..1365 44..1408 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:48:26 Download gff for IP19406.complete
Subject Subject Range Query Range Percent Splice Strand
CG13084-RA 1..1365 44..1408 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:34:58 Download gff for IP19406.complete
Subject Subject Range Query Range Percent Splice Strand
CG13084-RA 1..1365 44..1408 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 16:51:46 Download gff for IP19406.complete
Subject Subject Range Query Range Percent Splice Strand
CG13084-RA 1..1365 44..1408 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:03:04 Download gff for IP19406.complete
Subject Subject Range Query Range Percent Splice Strand
CG13084-RA 1..1524 1..1525 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:49:49 Download gff for IP19406.complete
Subject Subject Range Query Range Percent Splice Strand
CG13084-RA 1..1524 1..1525 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:48:26 Download gff for IP19406.complete
Subject Subject Range Query Range Percent Splice Strand
CG13084-RA 1..1365 44..1408 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:34:58 Download gff for IP19406.complete
Subject Subject Range Query Range Percent Splice Strand
CG13084-RA 1..1524 1..1525 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:28:03 Download gff for IP19406.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19484930..19485897 1..968 99 -> Plus
2L 19485957..19486512 969..1525 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:28:03 Download gff for IP19406.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19484930..19485897 1..968 99 -> Plus
2L 19485957..19486512 969..1525 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:28:03 Download gff for IP19406.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19484930..19485897 1..968 99 -> Plus
2L 19485957..19486512 969..1525 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:49:49 Download gff for IP19406.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19484930..19485897 1..968 99 -> Plus
arm_2L 19485957..19486512 969..1525 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:55:03 Download gff for IP19406.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19484930..19485897 1..968 99 -> Plus
2L 19485957..19486512 969..1525 99   Plus

IP19406.hyp Sequence

Translation from 0 to 1407

> IP19406.hyp
LAIGVSSRKQLAVEMKVLITFFFLGACLCGIQADESIADLLKDNAKGVQA
ANVLLTRIAQVSEQTQVGLAEQKEALKALTLVEKLLAKLTVVLEVGSHNL
VATLENLSRQGEEYGNRTESELLELVRLQEGTKEILNVLEAKLDAYQRHV
LHSSRNIDNSIDGLAKLITRTVLPQLNGLKCTFDSLETSQINVEVELKNL
AGVKELSENSNFKLNVLEHQLKQLNRTQEQRLDILIDAVKHLQPHSSWKV
EAVLRELIISQKRIELGLEECSRQQPYPQYGHHDESYLPTYGAEVPEPQH
AHPKPKQVDLEQVWSIKEEPKHGEHSGNHKATAYAQSPEPKKNYQSSSAV
SWRQTVPWEYGSPYQSAPVHHHQPWNPAPAHVPTSVTKPKPCPKKEHPTP
ASYVPLPHDQPESYKLPVDYSPKPNHEQPHKPHHEPQSYNEEIYKPQPIQ
PGESFRIWYGDSSLPQGY*

IP19406.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:55:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG13084-PA 454 CG13084-PA 1..454 15..468 2401 100 Plus
CG4066-PA 588 CG4066-PA 299..533 34..268 268 29.8 Plus
CG13083-PB 316 CG13083-PB 1..306 15..322 212 22.7 Plus

IP19406.pep Sequence

Translation from 43 to 1407

> IP19406.pep
MKVLITFFFLGACLCGIQADESIADLLKDNAKGVQAANVLLTRIAQVSEQ
TQVGLAEQKEALKALTLVEKLLAKLTVVLEVGSHNLVATLENLSRQGEEY
GNRTESELLELVRLQEGTKEILNVLEAKLDAYQRHVLHSSRNIDNSIDGL
AKLITRTVLPQLNGLKCTFDSLETSQINVEVELKNLAGVKELSENSNFKL
NVLEHQLKQLNRTQEQRLDILIDAVKHLQPHSSWKVEAVLRELIISQKRI
ELGLEECSRQQPYPQYGHHDESYLPTYGAEVPEPQHAHPKPKQVDLEQVW
SIKEEPKHGEHSGNHKATAYAQSPEPKKNYQSSSAVSWRQTVPWEYGSPY
QSAPVHHHQPWNPAPAHVPTSVTKPKPCPKKEHPTPASYVPLPHDQPESY
KLPVDYSPKPNHEQPHKPHHEPQSYNEEIYKPQPIQPGESFRIWYGDSSL
PQGY*

IP19406.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:24:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14238-PA 492 GF14238-PA 1..492 1..454 1175 52 Plus
Dana\GF17241-PA 529 GF17241-PA 233..470 20..257 235 27.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:24:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21185-PA 439 GG21185-PA 1..439 1..445 1967 84.5 Plus
Dere\GG18728-PA 535 GG18728-PA 252..486 20..254 221 29.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:24:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11104-PA 441 GH11104-PA 5..412 4..389 639 40.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:24:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG13084-PA 454 CG13084-PA 1..454 1..454 2401 100 Plus
CG4066-PA 588 CG4066-PA 299..533 20..254 268 29.8 Plus
CG13083-PB 316 CG13083-PB 1..306 1..308 212 22.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:24:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18226-PA 443 GI18226-PA 1..443 1..454 643 37.4 Plus
Dmoj\GI10283-PA 536 GI10283-PA 72..311 26..265 297 30 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:24:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21215-PA 502 GL21215-PA 1..502 1..454 994 44.6 Plus
Dper\GL22275-PA 419 GL22275-PA 119..350 26..257 216 28.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:24:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12034-PA 502 GA12034-PA 1..502 1..454 997 44.7 Plus
Dpse\GA17931-PB 417 GA17931-PB 117..348 26..257 196 27.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:24:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17352-PA 447 GM17352-PA 1..446 1..446 2252 95.1 Plus
Dsec\GM24011-PA 588 GM24011-PA 302..553 23..273 212 28.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:24:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24210-PA 454 GD24210-PA 1..454 1..454 2333 96.9 Plus
Dsim\GD18811-PA 564 GD18811-PA 278..529 23..273 234 29 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:24:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18134-PA 447 GJ18134-PA 1..447 1..454 711 39.5 Plus
Dvir\GJ18135-PA 345 GJ18135-PA 44..295 23..277 166 24.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:24:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18186-PA 532 GK18186-PA 10..532 3..454 745 38.4 Plus
Dwil\GK18182-PA 324 GK18182-PA 10..258 3..255 593 50.6 Plus
Dwil\GK11559-PA 284 GK11559-PA 32..271 20..267 192 30.4 Plus
Dwil\GK18185-PA 317 GK18185-PA 3..301 1..287 185 22.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:24:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13258-PA 456 GE13258-PA 1..456 1..454 2049 87.9 Plus
Dyak\GE26170-PA 573 GE26170-PA 287..518 23..254 219 27.6 Plus