Clone IP19852 Report

Search the DGRC for IP19852

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:198
Well:52
Vector:pOT2
Associated Gene/TranscriptCG33308-RA
Protein status:IP19852.pep: chimeric full length peptide match
Sequenced Size:1663

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
HDC02577 2008-04-29 Release 5.5 accounting
HDC02577 2008-05-05 Release 5.5 slip selected
HDC02577 2008-08-15 Release 5.9 accounting
CG4151 2008-08-15 Release 5.9 accounting
HDC02577 2008-12-18 5.12 accounting
CG4151 2008-12-18 5.12 accounting

Clone Sequence Records

IP19852.complete Sequence

1663 bp assembled on 2008-05-22

GenBank Submission: BT030916.1

> IP19852.complete
AAAGTCAGTTACTATTTCAAAATAATTAACTCTTACAAAATTGTTCAAAA
TTTATTTTAATTTTATCGCTTTGTCCAAAATATGTCGAAAACAAATGAAA
CTTGTATAAATGGTGACATCGCGCTGGAGAAAGAAGAATCACTTATCGAT
ATTAGTAGCAGTTCTCTGGAGGCTCAGCCAAATTTAAGCACTTCGGAATT
GGAGACAATTGTGAGAAACGCCGTTAAACAGATTCCAACACCTCCAAACT
ATGTCGACGTAACTGTGAATAGCATTGCAAATGCTATTCTGCCCAAAATA
TTAAACAAATATGATACGATCGAAATGAAGGTTGAGAATATCCAAAAATC
CCTGGACACTTATAGTCGGCAAGCGGAAGCAGTGGATCAAGACATAGCTG
AAATATTTTTGGATTTGCACACTATTTATAATAGGATCGAAAAACTCGAT
AAAAGTGGCAGTAAGTTATGCAGCGCGAAAAAGGCAATTTTATTAAGACA
TGTTAAGAAGTCTGAAGACTTACTGAACCAGTCGCGCCATTATCTCACAA
ACGATCCCAAAGAGTTGAGTGCCCATCTTGTTGGTCCACCAACGGAAGTC
CCATCGATTCAAAAGGAGCACACAGCAAACTCGGACGGCAGGACGACAGG
AAGTATCTAAACCATCAAACATCAAAATGGGATAAGCGTGTCTTTCTTAG
CAACATGGTAATGATATTCACCTCAATCGGTACAAAAAATACTTCATGGA
CGCAAAGCGGATATTAAATTTGGACTGCAACTAAAAAAAATTTATTAAAT
TGTCAACTATTTATAACAAATATCTGTTTGAACATTTTATAAAATGCCAT
TAAAAGTACTGTGTTAGATAACCTGACTTAACTGGGAAAAAAAAAAAAAA
AAAAAAACTCGACAGCAGCAAAGATCTCCAGATCCACCAGAGAAATCATG
AGCAAGTTCACCATTTGCCTTCTCCTCGTCGTCCTGGCCATCGTGGCCAT
CCAGGCTGATGGCGATCGGCGTCCGTGTGTGGGTCGCTGCACCGGTCTGT
CCAGCGGCCAGAGTGTGTGCATCCGCAACAAGGTGACCAATGTGTGCACC
CGCCTGCCGGCCTGTCGTCTGCGGGAGAAGAATTGCCGCCGTCGGGACAA
TGGACTCGAACCCATTCGGGAGACATGCATCACCCGCTGTCGCAACATTC
CCGGCACCAGCGGCGTGGGCCAGTGCGCCATCAGGCTGCGTCCTCGTCCC
CAGTCCGATGGCAAGCGCATCAAGGAGTGCCAGAGGAGGATCTGCCTTGA
CGACAAGCTGGCCAGCTGCTGGAGGGACCAGCAGGGCGCTTGCATCCTGC
AGACCCGCTGCGAGGCCCAGAGGAGGAACTGCGTCCGGAATCCGCTTAAC
CAGTGGGTGAGGGCCAGCCAGTGGAGCTGCCAGGGCAATGTTGTGGGCGG
TGGCATCCGACGCTGCCGCACCAGGCCCATCATCATCAAGGACTAAGAGT
TCTGGCGAGGAAGCCCCCATACGCGGATCCCAACTTGAATCCTGGCACTG
ACCTCCTTTCGCATACAGTTTTTTTTTGTCCAACTTCTTTAAATTTTTTT
GCCTATGTTAGTCCCGTACAAATATAAATAATTCAATCACATTTAAAAAA
AAAAAAAAAAAAA

IP19852.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:52:08
Subject Length Description Subject Range Query Range Score Percent Strand
HDC02577-RA 915 HDC02577-RA 24..911 1..888 4440 100 Plus
CG4151-RA 744 CG4151-RA 6..742 911..1647 3685 100 Plus
nc_22033.a 602 nc_22033.a 1..537 1647..1111 2685 100 Minus
nc_22033.a 602 nc_22033.a 535..600 976..911 330 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:49:30
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 5394258..5394991 911..1644 3670 100 Plus
chr2L 23010047 chr2L 14801089..14801704 1..616 3080 100 Plus
chr2L 23010047 chr2L 14801752..14802027 613..888 1380 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:40:02 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:49:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5501837..5502573 911..1647 3685 100 Plus
2L 23513712 2L 14802357..14802972 1..616 3080 100 Plus
2L 23513712 2L 14803020..14803295 613..888 1380 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:48:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 5509935..5510671 911..1647 3685 100 Plus
2L 23513712 2L 14802357..14802972 1..616 3080 100 Plus
2L 23513712 2L 14803020..14803295 613..888 1380 100 Plus
Blast to na_te.dros performed 2019-03-16 16:49:28
Subject Length Description Subject Range Query Range Score Percent Strand
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 1027..1093 68..2 128 69.6 Minus
Dbif\P-element_M 2935 Dbif\P-element_M P_M 2935bp Derived from X60990. 1183..1240 81..23 121 69.5 Minus

IP19852.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:50:24 Download gff for IP19852.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 5394263..5394991 916..1644 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:16:34 Download gff for IP19852.complete
Subject Subject Range Query Range Percent Splice Strand
HDC02577-RA 1..579 82..660 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:38:42 Download gff for IP19852.complete
Subject Subject Range Query Range Percent Splice Strand
CG33308-RA 1..579 82..660 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:23:59 Download gff for IP19852.complete
Subject Subject Range Query Range Percent Splice Strand
CG33308-RA 1..579 82..660 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:44:30 Download gff for IP19852.complete
Subject Subject Range Query Range Percent Splice Strand
HDC02577-RA 1..579 82..660 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:44:04 Download gff for IP19852.complete
Subject Subject Range Query Range Percent Splice Strand
CG33308-RA 1..579 82..660 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:07:59 Download gff for IP19852.complete
Subject Subject Range Query Range Percent Splice Strand
HDC02577-RA 24..915 1..892 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:38:41 Download gff for IP19852.complete
Subject Subject Range Query Range Percent Splice Strand
CG33308-RA 24..915 1..892 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:59 Download gff for IP19852.complete
Subject Subject Range Query Range Percent Splice Strand
CG33308-RA 24..909 1..886 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:44:30 Download gff for IP19852.complete
Subject Subject Range Query Range Percent Splice Strand
HDC02577-RA 24..915 1..892 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:44:04 Download gff for IP19852.complete
Subject Subject Range Query Range Percent Splice Strand
CG33308-RA 24..909 1..886 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:50:24 Download gff for IP19852.complete
Subject Subject Range Query Range Percent Splice Strand
X 5501835..5502570 909..1644 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:50:24 Download gff for IP19852.complete
Subject Subject Range Query Range Percent Splice Strand
X 5501835..5502570 909..1644 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:50:24 Download gff for IP19852.complete
Subject Subject Range Query Range Percent Splice Strand
X 5501835..5502570 909..1644 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:59 Download gff for IP19852.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5395868..5396603 909..1644 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:21:13 Download gff for IP19852.complete
Subject Subject Range Query Range Percent Splice Strand
X 5509933..5510668 909..1644 99   Plus

IP19852.pep Sequence

Translation from 81 to 659

> IP19852.pep
MSKTNETCINGDIALEKEESLIDISSSSLEAQPNLSTSELETIVRNAVKQ
IPTPPNYVDVTVNSIANAILPKILNKYDTIEMKVENIQKSLDTYSRQAEA
VDQDIAEIFLDLHTIYNRIEKLDKSGSKLCSAKKAILLRHVKKSEDLLNQ
SRHYLTNDPKELSAHLVGPPTEVPSIQKEHTANSDGRTTGSI*

IP19852.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:57:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14897-PA 321 GF14897-PA 8..173 16..175 305 44.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:57:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25133-PA 170 GG25133-PA 1..164 1..178 537 61.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:57:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10902-PA 257 GH10902-PA 50..176 31..158 200 31.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:40:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG33308-PA 192 CG33308-PA 1..192 1..192 963 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:57:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13161-PA 257 GI13161-PA 44..167 34..156 181 27 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:57:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25713-PA 143 GA25713-PA 4..109 69..172 145 32.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:57:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15807-PA 183 GM15807-PA 1..176 1..178 775 84.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:57:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23981-PA 182 GD23981-PA 1..175 1..178 750 82.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:57:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11785-PA 257 GJ11785-PA 54..187 38..171 183 31.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:57:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19300-PA 175 GK19300-PA 29..130 26..122 139 34 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:57:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19051-PA 214 GE19051-PA 1..180 1..178 597 68 Plus

IP19852.hyp Sequence

Translation from 887 to 1495

> IP19852.hyp
KKKKKRKLTAAKISRSTREIMSKFTICLLLVVLAIVAIQADGDRRPCVGR
CTGLSSGQSVCIRNKVTNVCTRLPACRLREKNCRRRDNGLEPIRETCITR
CRNIPGTSGVGQCAIRLRPRPQSDGKRIKECQRRICLDDKLASCWRDQQG
ACILQTRCEAQRRNCVRNPLNQWVRASQWSCQGNVVGGGIRRCRTRPIII
KD*

IP19852.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:59:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG4151-PB 182 CG4151-PB 1..182 21..202 990 100 Plus
CG4151-PA 182 CG4151-PA 1..182 21..202 990 100 Plus