Clone IP19857 Report

Search the DGRC for IP19857

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:198
Well:57
Vector:pOT2
Associated Gene/Transcriptp38c-RA
Protein status:IP19857.pep: gold
Sequenced Size:1201

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
p38c 2008-04-29 Release 5.5 accounting
p38c 2008-05-05 Release 5.5 slip selected
p38c 2008-08-15 Release 5.9 accounting
p38c 2008-12-18 5.12 accounting

Clone Sequence Records

IP19857.complete Sequence

1201 bp assembled on 2008-05-14

GenBank Submission: BT030917

> IP19857.complete
TTTTTGCACATTTAATCCAGAATGCCGGAGTTCGTGAGAGTGGCAATTAA
CGAAAGCCTTTGGGAGTTCCCGGATATATACGAGTTCGTTCGTTTTCTGG
GTGGCGGTTCCTTTGGCCAGGTGGCTAAGGTGAGACTACGAGGCACTGAA
AATTACTTCGCTATGAAAAGGCTTATGCGCCCATTCGAGAGGGAGGAGGA
TGCTAAGGGTACCTATCGCGAGATCCGTCTGCTGAAGCACATGAATCATC
GAAATGTTATCAGCCTGCTGAACGTCTTCCATCCACCAGCGCACAACATG
ATGGAATTTCAGCAGGTTTATTTGGTGACTCACCTGATGGACGCGGATTT
GCACAGGTACTCGCGTTCGAAAAGGATGAGCGATCAAGAGATTAGGATAA
TCCTTTACCAAATACTGCGGGGACTGAAGTACATACATAGTGCCGGGGTT
GTTCATCGAGACTTAAAGCCCTGCAATATCGCAGTTAATGGAAATAGCGA
GGTGCGCATACTTGACTTCGGTTTATCCCGTATGTGCGCAGACAAAATGA
CGGACCATGTTGGAACTATGTGGTATCTAGCTCCGGAAATTATCTTTTTA
AGGGGTCAATACACAAAGGCAATTGACGTGTGGTCGGTTGGTTGCATTCT
GGCGGAACTTATCACGGATCGTGTCCTGTTTCGCGGTGAAAACTATGTAA
GCCAAATACGATGTCTGATTAACATAATGGGTACTCCGACGAGGGAGTTT
ATCACCGGGATAAGCATGGAACGTTCGCGTAATTACCTGGAGGGGTACCC
GTTACGACAAAGGTGCGATTTTCATCACCTGTTTATGGGTTACGATGTCC
AGGCCATCGATTTGATGGAAAAAATGCTCGAAATGGTACCCGAAAAACGT
ATCACAGCTGCGGAAGCAATGCTCCATCCATACCTTCGGGATCTTATTGA
GCCACACCATCATGCCGAAGACACCGCACCAGTCTATGATCAGAACTTCG
AAAACATGGTACTGCCTGTAAAATGCTGGAAAGAACTTGTTTCCCACGAG
ATTCGGAACTTCAGACCTGACCAACTTGATTTGCATTTTTAAAATGCCGT
AGTTAATGTAGCAGAAGTAATAAATTTTAAATTAATTAAATGAACAAATT
TTTCACAAAATTAAATTAAAAACTGGATATTCATAAAAAAAAAAAAAAAA
A

IP19857.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:57:44
Subject Length Description Subject Range Query Range Score Percent Strand
p38c-RA 1184 p38c-RA 1..1184 1..1184 5920 100 Plus
CG6178.a 1820 CG6178.a 1..69 1002..934 345 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:22:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 19972347..19973530 1184..1 5785 99.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:40:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:22:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24149017..24150203 1187..1 5935 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:54:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 23889848..23891034 1187..1 5935 100 Minus
Blast to na_te.dros performed on 2019-03-16 13:22:32 has no hits.

IP19857.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:23:24 Download gff for IP19857.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 19972415..19973530 1..1116 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:16:37 Download gff for IP19857.complete
Subject Subject Range Query Range Percent Splice Strand
p38c-RA 1..1071 22..1092 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:51:10 Download gff for IP19857.complete
Subject Subject Range Query Range Percent Splice Strand
p38c-RA 1..1071 22..1092 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:27:38 Download gff for IP19857.complete
Subject Subject Range Query Range Percent Splice Strand
p38c-RA 1..1071 22..1092 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:50:23 Download gff for IP19857.complete
Subject Subject Range Query Range Percent Splice Strand
p38c-RA 1..1071 22..1092 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:18:17 Download gff for IP19857.complete
Subject Subject Range Query Range Percent Splice Strand
p38c-RA 1..1071 22..1092 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:14:11 Download gff for IP19857.complete
Subject Subject Range Query Range Percent Splice Strand
p38c-RA 1..1071 22..1092 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:51:10 Download gff for IP19857.complete
Subject Subject Range Query Range Percent Splice Strand
p38c-RA 1..1184 1..1184 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:27:38 Download gff for IP19857.complete
Subject Subject Range Query Range Percent Splice Strand
p38c-RA 1..1184 1..1184 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:50:23 Download gff for IP19857.complete
Subject Subject Range Query Range Percent Splice Strand
p38c-RA 1..1071 22..1092 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:18:17 Download gff for IP19857.complete
Subject Subject Range Query Range Percent Splice Strand
p38c-RA 1..1184 1..1184 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:23:24 Download gff for IP19857.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24149020..24150203 1..1184 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:23:24 Download gff for IP19857.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24149020..24150203 1..1184 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:23:24 Download gff for IP19857.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24149020..24150203 1..1184 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:27:38 Download gff for IP19857.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19974742..19975925 1..1184 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:29:30 Download gff for IP19857.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23889851..23891034 1..1184 100   Minus

IP19857.hyp Sequence

Translation from 21 to 1091

> IP19857.hyp
MPEFVRVAINESLWEFPDIYEFVRFLGGGSFGQVAKVRLRGTENYFAMKR
LMRPFEREEDAKGTYREIRLLKHMNHRNVISLLNVFHPPAHNMMEFQQVY
LVTHLMDADLHRYSRSKRMSDQEIRIILYQILRGLKYIHSAGVVHRDLKP
CNIAVNGNSEVRILDFGLSRMCADKMTDHVGTMWYLAPEIIFLRGQYTKA
IDVWSVGCILAELITDRVLFRGENYVSQIRCLINIMGTPTREFITGISME
RSRNYLEGYPLRQRCDFHHLFMGYDVQAIDLMEKMLEMVPEKRITAAEAM
LHPYLRDLIEPHHHAEDTAPVYDQNFENMVLPVKCWKELVSHEIRNFRPD
QLDLHF*

IP19857.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:59:35
Subject Length Description Subject Range Query Range Score Percent Strand
p38c-PA 356 CG33338-PA 1..356 1..356 1893 100 Plus
p38a-PC 366 CG5475-PC 8..354 3..349 953 52.7 Plus
p38a-PB 366 CG5475-PB 8..354 3..349 953 52.7 Plus
p38a-PA 366 CG5475-PA 8..354 3..349 953 52.7 Plus
p38b-PA 365 CG7393-PA 5..353 1..349 941 50.7 Plus

IP19857.pep Sequence

Translation from 21 to 1091

> IP19857.pep
MPEFVRVAINESLWEFPDIYEFVRFLGGGSFGQVAKVRLRGTENYFAMKR
LMRPFEREEDAKGTYREIRLLKHMNHRNVISLLNVFHPPAHNMMEFQQVY
LVTHLMDADLHRYSRSKRMSDQEIRIILYQILRGLKYIHSAGVVHRDLKP
CNIAVNGNSEVRILDFGLSRMCADKMTDHVGTMWYLAPEIIFLRGQYTKA
IDVWSVGCILAELITDRVLFRGENYVSQIRCLINIMGTPTREFITGISME
RSRNYLEGYPLRQRCDFHHLFMGYDVQAIDLMEKMLEMVPEKRITAAEAM
LHPYLRDLIEPHHHAEDTAPVYDQNFENMVLPVKCWKELVSHEIRNFRPD
QLDLHF*

IP19857.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:18:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18894-PA 365 GF18894-PA 1..352 1..349 1056 58.1 Plus
Dana\GF23057-PA 365 GF23057-PA 5..353 1..349 969 51 Plus
Dana\GF18893-PA 366 GF18893-PA 8..354 3..349 966 52.1 Plus
Dana\GF14126-PA 371 GF14126-PA 23..361 20..347 546 37.9 Plus
Dana\GF23805-PA 513 GF23805-PA 127..412 24..305 499 38.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:18:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12370-PA 343 GG12370-PA 3..343 9..350 1471 78.1 Plus
Dere\GG23876-PA 361 GG23876-PA 1..349 1..349 966 50.7 Plus
Dere\GG12369-PA 366 GG12369-PA 8..354 3..349 964 52.1 Plus
Dere\GG23964-PA 372 GG23964-PA 24..362 20..347 543 37.6 Plus
Dere\GG14461-PA 430 GG14461-PA 44..329 24..305 497 38.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:18:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11110-PA 361 GH11110-PA 1..349 1..349 955 50.1 Plus
Dgri\GH19092-PA 366 GH19092-PA 8..354 3..349 931 49.9 Plus
Dgri\GH13352-PA 378 GH13352-PA 29..373 9..351 610 36.7 Plus
Dgri\GH13559-PA 369 GH13559-PA 21..359 20..347 550 37.9 Plus
Dgri\GH14986-PA 546 GH14986-PA 160..445 24..305 498 38.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:52:13
Subject Length Description Subject Range Query Range Score Percent Strand
p38c-PA 356 CG33338-PA 1..356 1..356 1893 100 Plus
p38a-PC 366 CG5475-PC 8..354 3..349 953 52.7 Plus
p38a-PB 366 CG5475-PB 8..354 3..349 953 52.7 Plus
p38a-PA 366 CG5475-PA 8..354 3..349 953 52.7 Plus
p38b-PA 365 CG7393-PA 5..353 1..349 941 50.7 Plus
rl-PI 376 CG12559-PI 19..373 1..353 610 36.5 Plus
rl-PC 376 CG12559-PC 19..373 1..353 610 36.5 Plus
rl-PD 376 CG12559-PD 19..373 1..353 610 36.5 Plus
rl-PE 376 CG12559-PE 19..373 1..353 610 36.5 Plus
rl-PG 331 CG12559-PG 15..328 42..353 586 38.7 Plus
bsk-PE 372 CG5680-PE 11..362 7..347 540 36.5 Plus
bsk-PF 372 CG5680-PF 11..362 7..347 540 36.5 Plus
bsk-PB 372 CG5680-PB 11..362 7..347 540 36.5 Plus
rl-PH 266 CG12559-PH 2..263 97..353 533 41.1 Plus
nmo-PC 414 CG7892-PC 44..329 24..305 493 37.8 Plus
nmo-PB 414 CG7892-PB 44..329 24..305 493 37.8 Plus
nmo-PA 414 CG7892-PA 44..329 24..305 493 37.8 Plus
nmo-PH 430 CG7892-PH 44..329 24..305 493 37.8 Plus
nmo-PG 430 CG7892-PG 44..329 24..305 493 37.8 Plus
nmo-PF 430 CG7892-PF 44..329 24..305 493 37.8 Plus
nmo-PE 430 CG7892-PE 44..329 24..305 493 37.8 Plus
Erk7-PC 451 CG32703-PC 24..319 19..305 461 33.8 Plus
Erk7-PB 916 CG32703-PB 24..319 19..305 461 33.8 Plus
Erk7-PA 916 CG32703-PA 24..319 19..305 461 33.8 Plus
Cdk1-PA 297 CG5363-PA 4..286 20..304 415 32.2 Plus
Cdk5-PA 294 CG8203-PA 4..294 20..313 411 34 Plus
Cdk12-PC 1157 CG7597-PC 802..1101 18..308 411 33.1 Plus
Cdk12-PA 1157 CG7597-PA 802..1101 18..308 411 33.1 Plus
Cdk12-PB 1157 CG7597-PB 802..1101 18..308 411 33.1 Plus
CG42366-PB 703 CG42366-PB 10..325 26..334 397 30.9 Plus
CG42366-PA 706 CG31711-PA 10..325 26..334 397 30.9 Plus
sgg-PG 496 CG2621-PG 36..365 20..346 385 29.6 Plus
sgg-PC 514 CG2621-PC 54..383 20..346 385 29.6 Plus
sgg-PF 514 CG2621-PF 54..383 20..346 385 29.6 Plus
sgg-PE 514 CG2621-PE 54..383 20..346 385 29.6 Plus
sgg-PB 514 CG2621-PB 54..383 20..346 385 29.6 Plus
sgg-PI 514 CG2621-PI 54..383 20..346 385 29.6 Plus
sgg-PH 514 CG2621-PH 54..383 20..346 385 29.6 Plus
sgg-PA 575 CG2621-PA 54..383 20..346 385 29.6 Plus
sgg-PJ 575 CG2621-PJ 54..383 20..346 385 29.6 Plus
sgg-PR 597 CG2621-PR 76..405 20..346 385 29.6 Plus
sgg-PD 1067 CG2621-PD 607..936 20..346 385 29.6 Plus
sgg-PQ 1168 CG2621-PQ 647..976 20..346 385 29.6 Plus
sgg-PP 1126 CG2621-PP 647..995 20..346 370 28.6 Plus
Cdk7-PA 353 CG3319-PA 12..301 20..311 366 32.4 Plus
CG7236-PD 412 CG7236-PD 22..320 18..316 362 32.4 Plus
CG7236-PE 421 CG7236-PE 31..329 18..316 362 32.4 Plus
CG7236-PB 435 CG7236-PB 45..343 18..316 362 32.4 Plus
CG7236-PC 438 CG7236-PC 48..346 18..316 362 32.4 Plus
Cdk2-PC 314 CG10498-PC 6..302 18..320 346 29.5 Plus
Cdk2-PB 314 CG10498-PB 6..302 18..320 346 29.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:18:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18232-PA 361 GI18232-PA 1..351 1..351 951 49.9 Plus
Dmoj\GI23428-PA 366 GI23428-PA 8..354 3..349 944 50.4 Plus
Dmoj\GI18259-PA 339 GI18259-PA 25..331 8..311 596 39.2 Plus
Dmoj\GI10639-PA 366 GI10639-PA 21..359 20..347 546 37.9 Plus
Dmoj\GI13148-PA 556 GI13148-PA 170..455 24..305 499 38.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:18:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24141-PA 366 GL24141-PA 8..354 3..349 987 53.3 Plus
Dper\GL21224-PA 343 GL21224-PA 1..333 1..351 882 47.6 Plus
Dper\GL20446-PA 375 GL20446-PA 27..370 9..351 611 37.1 Plus
Dper\GL18977-PA 371 GL18977-PA 23..361 20..347 545 37.6 Plus
Dper\GL24143-PA 141 GL24143-PA 1..138 1..136 445 60.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:18:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26518-PA 370 GA26518-PA 1..352 1..349 1145 60.2 Plus
Dpse\GA18909-PA 366 GA18909-PA 8..354 3..349 987 53.3 Plus
Dpse\GA20320-PA 365 GA20320-PA 5..355 1..351 982 51.3 Plus
Dpse\GA26003-PA 338 GA26003-PA 1..328 1..351 895 48.4 Plus
Dpse\GA20894-PA 294 GA20894-PA 4..294 20..313 424 34 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:18:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23509-PA 347 GM23509-PA 1..347 1..347 1713 91.4 Plus
Dsec\GM23508-PA 366 GM23508-PA 8..354 3..349 976 52.7 Plus
Dsec\GM15179-PA 365 GM15179-PA 5..353 1..349 965 50.7 Plus
Dsec\GM16932-PA 340 GM16932-PA 19..332 1..311 598 39 Plus
Dsec\GM11912-PA 372 GM11912-PA 24..362 20..347 542 37.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:18:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18319-PA 347 GD18319-PA 1..347 1..347 1723 91.6 Plus
Dsim\GD18318-PA 366 GD18318-PA 8..354 3..349 977 52.7 Plus
Dsim\GD23919-PA 365 GD23919-PA 5..353 1..349 965 50.7 Plus
Dsim\GD22289-PA 372 GD22289-PA 24..362 20..347 542 37.6 Plus
Dsim\GD14046-PA 430 GD14046-PA 44..329 24..305 499 38.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:18:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18140-PA 361 GJ18140-PA 1..351 1..351 990 51.6 Plus
Dvir\GJ14531-PA 361 GJ14531-PA 1..349 1..349 951 50.4 Plus
Dvir\GJ17518-PA 375 GJ17518-PA 26..370 9..351 611 36.7 Plus
Dvir\GJ21884-PA 369 GJ21884-PA 21..359 20..347 561 38.5 Plus
Dvir\GJ13897-PA 519 GJ13897-PA 133..418 24..305 498 38.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:18:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18192-PA 364 GK18192-PA 1..351 1..351 956 49.6 Plus
Dwil\GK11930-PA 365 GK11930-PA 11..360 3..356 908 49.2 Plus
Dwil\GK18964-PA 352 GK18964-PA 1..342 1..349 807 43.6 Plus
Dwil\GK12444-PA 371 GK12444-PA 23..361 20..347 547 37.9 Plus
Dwil\GK20588-PA 520 GK20588-PA 134..419 24..305 494 38.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:18:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10825-PA 349 GE10825-PA 1..347 1..348 1302 68.9 Plus
Dyak\GE10824-PA 366 GE10824-PA 8..354 3..349 972 52.1 Plus
Dyak\GE18678-PA 365 GE18678-PA 5..353 1..349 965 50.7 Plus
Dyak\GE11327-PA 376 GE11327-PA 19..371 1..351 608 36.1 Plus
Dyak\GE26274-PA 372 GE26274-PA 24..362 20..347 542 37.6 Plus