Clone IP20004 Report

Search the DGRC for IP20004

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:200
Well:4
Vector:pOT2
Associated Gene/TranscriptCG33635-RA
Protein status:IP20004.pep: gold
Sequenced Size:740

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG33635 2008-04-29 Release 5.5 accounting
CG33635 2008-05-05 Release 5.5 slip selected
CG33635 2008-08-15 Release 5.9 accounting
CG33635 2008-12-18 5.12 accounting

Clone Sequence Records

IP20004.complete Sequence

740 bp assembled on 2008-05-14

GenBank Submission: BT030945

> IP20004.complete
TAAAAGAAGTATGAGTAATTTAAAATCGGACCTGGATGAATACTTGCTAC
TGCAGAGTGATCAGAAGAAACCAAGTTTCAACGTCAAGTTGCCACAGCTG
AAAGTTCCATTTTTCTCCAGCTCCGACCCAGAAGCAAATAGTTTTCTGAA
AGATAGCGACTCATGTTTTCCAAAATTGTCTCGCCTGCAGCGAATCGTGG
GCTTCGTGGCCTGTTTAGGAATGGGCGCATTGTGCATGACCCTTTCCACG
TTCTACATTCCCTTCCTAATATTGAAGGCCAGAAAGTTTGCCTTGCTCTA
CACCCTTGGCAGCCTCTTTTTCATTTTGAGCTTTTGCTTTCTCTCCGGAT
TTGGATCCTTTTTAAAGCAAATGTTTTCCAAACCAAGACTGCTCACCTCG
CTTTCATATAGTTCCTGTTTGATTTTAACCTTATACTGCGCCTTGGTGGC
CAAAAGCACCGCATTTACAGTCCTTTTTGCAGTGGCGCAAATAATTGCAT
TGCTCTTTATGGTCCTGGGCACTGTCCCTGGGGGAGCTACGGGGCTCAAG
TTCTTCGGACAACTCTTCAAGAACACCGTTTCCGCTTCAACAAGTGTACT
GCCTGTATGAAGGAGGGGAAATCTGGAAAATGAGCTCCACCACCGCAGCA
ATAAAAGTAACTTATTAACTCATTGATAAATCTAAAATAAAACTTATTTG
TGATACCACGCGCCTCCCAAAAAAAAAAAAAAAAAAAAAA

IP20004.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:57:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG33635-RA 916 CG33635-RA 172..891 1..720 3600 100 Plus
CG33635.a 896 CG33635.a 172..830 1..659 3295 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:12:57
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 157873..158413 718..178 2705 100 Minus
chr2L 23010047 chr2L 158473..158650 178..1 890 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:40:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:12:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 157834..158376 720..178 2715 100 Minus
2L 23513712 2L 158436..158613 178..1 890 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:54:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 157834..158376 720..178 2715 100 Minus
2L 23513712 2L 158436..158613 178..1 890 100 Minus
Blast to na_te.dros performed on 2019-03-16 06:12:55 has no hits.

IP20004.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:13:39 Download gff for IP20004.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 158473..158650 1..178 100   Minus
chr2L 157873..158412 179..718 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:17:44 Download gff for IP20004.complete
Subject Subject Range Query Range Percent Splice Strand
CG33635-RA 1..600 11..610 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:51:39 Download gff for IP20004.complete
Subject Subject Range Query Range Percent Splice Strand
CG33635-RA 1..600 11..610 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:32:16 Download gff for IP20004.complete
Subject Subject Range Query Range Percent Splice Strand
CG33635-RA 1..600 11..610 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:50:47 Download gff for IP20004.complete
Subject Subject Range Query Range Percent Splice Strand
CG33635-RA 1..600 11..610 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:14:52 Download gff for IP20004.complete
Subject Subject Range Query Range Percent Splice Strand
CG33635-RA 1..600 11..610 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:14:35 Download gff for IP20004.complete
Subject Subject Range Query Range Percent Splice Strand
CG33635-RA 1..600 11..610 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:51:39 Download gff for IP20004.complete
Subject Subject Range Query Range Percent Splice Strand
CG33635-RA 52..769 1..718 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:32:16 Download gff for IP20004.complete
Subject Subject Range Query Range Percent Splice Strand
CG33635-RA 52..769 1..718 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:50:48 Download gff for IP20004.complete
Subject Subject Range Query Range Percent Splice Strand
CG33635-RA 1..600 11..610 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:14:52 Download gff for IP20004.complete
Subject Subject Range Query Range Percent Splice Strand
CG33635-RA 52..769 1..718 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:13:39 Download gff for IP20004.complete
Subject Subject Range Query Range Percent Splice Strand
2L 158436..158613 1..178 100   Minus
2L 157836..158375 179..718 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:13:39 Download gff for IP20004.complete
Subject Subject Range Query Range Percent Splice Strand
2L 158436..158613 1..178 100   Minus
2L 157836..158375 179..718 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:13:39 Download gff for IP20004.complete
Subject Subject Range Query Range Percent Splice Strand
2L 158436..158613 1..178 100   Minus
2L 157836..158375 179..718 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:32:16 Download gff for IP20004.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 157836..158375 179..718 100 <- Minus
arm_2L 158436..158613 1..178 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:29:47 Download gff for IP20004.complete
Subject Subject Range Query Range Percent Splice Strand
2L 157836..158375 179..718 100 <- Minus
2L 158436..158613 1..178 100   Minus

IP20004.hyp Sequence

Translation from 0 to 609

> IP20004.hyp
KRSMSNLKSDLDEYLLLQSDQKKPSFNVKLPQLKVPFFSSSDPEANSFLK
DSDSCFPKLSRLQRIVGFVACLGMGALCMTLSTFYIPFLILKARKFALLY
TLGSLFFILSFCFLSGFGSFLKQMFSKPRLLTSLSYSSCLILTLYCALVA
KSTAFTVLFAVAQIIALLFMVLGTVPGGATGLKFFGQLFKNTVSASTSVL
PV*

IP20004.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:02:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG33635-PA 199 CG33635-PA 1..199 4..202 997 100 Plus
CG5104-PB 163 CG5104-PB 15..154 43..183 170 31.2 Plus

IP20004.pep Sequence

Translation from 1 to 609

> IP20004.pep
KRSMSNLKSDLDEYLLLQSDQKKPSFNVKLPQLKVPFFSSSDPEANSFLK
DSDSCFPKLSRLQRIVGFVACLGMGALCMTLSTFYIPFLILKARKFALLY
TLGSLFFILSFCFLSGFGSFLKQMFSKPRLLTSLSYSSCLILTLYCALVA
KSTAFTVLFAVAQIIALLFMVLGTVPGGATGLKFFGQLFKNTVSASTSVL
PV*

IP20004.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:20:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24537-PA 203 GF24537-PA 1..203 4..202 856 86.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:20:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24673-PA 199 GG24673-PA 1..199 4..202 979 98 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:20:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10230-PA 204 GH10230-PA 1..204 4..202 746 79.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:19:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG33635-PA 199 CG33635-PA 1..199 4..202 997 100 Plus
CG5104-PB 163 CG5104-PB 15..154 43..183 170 31.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:20:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15147-PA 204 GI15147-PA 1..204 4..202 730 78.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:20:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19288-PA 205 GL19288-PA 1..205 4..202 850 85 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:20:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25900-PA 205 GA25900-PA 1..205 4..202 850 85 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:20:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16692-PA 199 GM16692-PA 1..199 4..202 983 98.5 Plus
Dsec\GM22305-PA 163 GM22305-PA 15..154 43..183 149 30.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:20:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22980-PA 199 GD22980-PA 1..199 4..202 983 98.5 Plus
Dsim\GD14898-PA 163 GD14898-PA 15..154 43..183 152 30.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:20:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17253-PA 204 GJ17253-PA 1..204 4..202 735 79.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:20:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23762-PA 206 GK23762-PA 1..192 4..190 806 85 Plus
Dwil\GK13617-PA 130 GK13617-PA 1..64 4..62 187 66.2 Plus
Dwil\GK13617-PA 130 GK13617-PA 74..116 148..190 163 76.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:20:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16372-PA 199 GE16372-PA 1..199 4..202 972 97.5 Plus